BAC Information

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BAC

Clone NameB6Ng01-233K23
Chromosome17 (Build37)
Map Location 76,710,585 - 76,869,392
singlet/doubletdoublet
Overlap genenone
Upstream geneLtbp1, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885, LOC100043886
Downstream geneEG624348, LOC545234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233K23.bB6Ng01-233K23.g
ACCGA045670GA045671
length1,0931,044
definitionB6Ng01-233K23.b B6Ng01-233K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,868,284 - 76,869,392)(76,710,585 - 76,711,630)
sequence
gaattctctttcttaacactgagaagtgctgcagaatagaagaagcagag
agtctgagtgacagagaagggagcattcctgcaagcagtgttacaagcaa
accttaatcctaatgactagaagcagatgaacgggtttaacttcatttgc
attgtagaattactttactcatattaattaattacatgtctgtagactca
atcataagtagaaatataatgaggaaaaagtcctttacccacaaaatatt
gccaacaaagtcaatagaaaccaccatatattaaaaatcttaaaattatt
taatcacttttaagactttaaataattaacttaatttaatatattttaaa
aatatgtattgtgtttcctattttacaatacaggaaataaagccaaaata
atccagtttgtccagatcactctactactttcaaaagtagccggtagttc
taataacttcaatattctgtttactgtgtcaaatggtggatcatgtttga
aaatttataacttgaaaatttgtaaacttcagtttgtaatgcatgctgtg
tggattgctctataaataaggctaaaataggtaagtagttaactgacttc
ctgatttattgagcagagagttagaggaaggcattgtagcagtatgcatt
gatattttattgcaattataaagaccctggactgaaaatttttataacaa
atatagaatgactatattgttaacaatgtaaaagctctgtatagtaatgc
atagttagtattttatggagagaaatagattaaataggacatcatggaca
gagatgtgtagaccgagaaaaacccataaaataaaattctctctaaaaaa
atgaatatatataatccagtccttcagctgaactcttaattgtgccaagt
cttacattttcttaaccatcttcatatttgtttaattttaaaatgtgatc
ttctgtgaatccatcaggccaatagttataaagcattaaatgaaatttcc
tatgacattgccattatagggcatgctatgcagtcttctataaattttag
acctcactgaaatctaatctgtgacctcatgtcaggctactga
gaattcccaagttggatccggtttgtgtatttgctaaccccagagatatg
ctgagtgggtctttgaaatctttaggacttcccggccaagttatgcccac
aaattccctggatgaacatcctgaaataaaattaggaatttgtatttact
tttatctgaatgttggaacgttaataaaaatcttttgtattaaattattg
atcaaaataaagacaaaaaaaaaataggaaccaaatctaagccctctgtg
attcagctagaaagaaacaagtcttgaaacagtttgtatctaatgccaaa
tattttaagcaccctaaagtgtaaatcataaatgtagaaagctaataaag
ccaatgaaaactctctctgaagggataatattaaattatacttaaatcat
atggagcaaagtgtccaaatggcccctccatcatggaaagaaaaatggaa
caagggagaaaagacacagcaatacaagcaagtgagaagtataacttcat
cacaacatattaaacagatatttatgtctcttgaatagggaacagaaaaa
ttagacttttctaaagaataagaacacagcttgacaatagtattagttta
gatctatgtaacatgatagtctaatcttaaagaaacagtttgagaatgaa
tagaaatgttaaaccataagttgcattaaaactcaggaaatagatttaga
ataaggccacagacagaatgtaggaattaaaaaagactgaaatatagcat
cagaatgaggcatacgagatcaatttagtacagtggcatgagtaaaatat
gtcctccattgtctctggcacttgaatactgaggtccagtctgtgacgtg
tttgggtatgagcgactgcttggagcaagtattctatgcatgatgggctc
tgatgataaaacaccccactttactactagatctgctctctccgctatta
atgtagcctccgagcgatactgctcaagcactatgtatctgcagctggct
gcgctgactctcagctacagttgaccatggccctggaactgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_76868284_76869392
seq2: B6Ng01-233K23.b_44_1136 (reverse)

seq1  TCAGTAG-CTGACATGAGGTTCACAGAATCTAGATTTTAGGTTGATGTCT  49
      ||||||| ||||||||||| |||||||   ||||||| ||  ||| ||||
seq2  TCAGTAGCCTGACATGAGG-TCACAGA--TTAGATTTCAG--TGAGGTCT  45

seq1  TAAAATTTTATAG-AGACTTTGCAAAGCATGCACTATAAATGGCAATGTC  98
        ||| ||||||| ||||  |||| ||||||| |||| ||||||||||||
seq2  --AAAATTTATAGAAGAC--TGCATAGCATGCCCTAT-AATGGCAATGTC  90

seq1  ATAGGAAATTTCCTTTTAATGCCTTTATAACCTATTTGGCCCTGAAGGAA  148
      ||||||||||| | ||||||| |||||||| |||||  | ||||| || |
seq2  ATAGGAAATTT-CATTTAATG-CTTTATAA-CTATT--GGCCTGATGG-A  134

seq1  TTCACAGAAGATCACATTTTAAAAATTAAACAAATATGAAGATGGTTTAA  198
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  TTCACAGAAGATCACATTTT-AAAATTAAACAAATATGAAGATGG-TTAA  182

seq1  GAAAATGTAAGACTTGGCACAATTAAGAGTTCAGCTGAAGGACTGGATTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTAAGACTTGGCACAATTAAGAGTTCAGCTGAAGGACTGGATTA  232

seq1  TATATATTCATTTTTTTAGAGAGAATTTTATTTTATGGGTTTTTCTTGGT  298
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATATATTCATTTTTTTAGAGAGAATTTTATTTTATGGGTTTTTCTCGGT  282

seq1  CTACACATCTCTGTCCATGATGTCCTATTTAATCTATTTCTCTCCATAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTACACATCTCTGTCCATGATGTCCTATTTAATCTATTTCTCTCCAT-AA  331

seq1  AATACTAACTATGCATTACTATACAGAGCTTTTACATTGTTAACAATATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAACTATGCATTACTATACAGAGCTTTTACATTGTTAACAATATA  381

seq1  GTCATTCTATATTTGTTATAAAAATTTTCAGTCCAGGGTCTTTATAATTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTATATTTGTTATAAAAATTTTCAGTCCAGGGTCTTTATAATTG  431

seq1  CAATAAAATATCAATGCATACTGCTACAATGCCTTCCTCTAACTCTCTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAATATCAATGCATACTGCTACAATGCCTTCCTCTAACTCTCTGC  481

seq1  TCAATAAATCAGGAAGTCAGTTAACTACTTACCTATTTTAGCCTTATTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAATCAGGAAGTCAGTTAACTACTTACCTATTTTAGCCTTATTTA  531

seq1  TAGAGCAATCCACACAGCATGCATTACAAACTGAAGTTTACAAATTTTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAATCCACACAGCATGCATTACAAACTGAAGTTTACAAATTTTCA  581

seq1  AGTTATAAATTTTCAAACATGATCCACCATTTGACACAGTAAACAGAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAAATTTTCAAACATGATCCACCATTTGACACAGTAAACAGAATA  631

seq1  TTGAAGTTATTAGAACTACCGGCTACTTTTGAAAGTAGTAGAGTGATCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTATTAGAACTACCGGCTACTTTTGAAAGTAGTAGAGTGATCTG  681

seq1  GACAAACTGGATTATTTTGGCTTTATTT-CTGTATTGTAAAATAGGAAAC  747
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GACAAACTGGATTATTTTGGCTTTATTTCCTGTATTGTAAAATAGGAAAC  731

seq1  ACAATACATATTTTTAAAATATATTAAATTAAGTTAATTATTTAAAGTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACATATTTTTAAAATATATTAAATTAAGTTAATTATTTAAAGTCT  781

seq1  TAAAAGTGATTAAATAATTTTAAGATTTTTAATATATGGTGGTTTCTATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGATTAAATAATTTTAAGATTTTTAATATATGGTGGTTTCTATT  831

seq1  GACTTTGTTGGCAATATTTTGTGGGTAAAGGACTTTTTCCTCATTATATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTTGGCAATATTTTGTGGGTAAAGGACTTTTTCCTCATTATATT  881

seq1  TCTACTTATGATTGAGTCTACAGACATGTAATTAATTAATATGAGTAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTATGATTGAGTCTACAGACATGTAATTAATTAATATGAGTAAAG  931

seq1  TAATTCTACAATGCAAATGAAGTTAAACCCGTTCATCTGCTTCTAGTCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTACAATGCAAATGAAGTTAAACCCGTTCATCTGCTTCTAGTCAT  981

seq1  TAGGATTAAGGTTTGCTTGTAACACTGCTTGCAGGAATGCTCCCTTCTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTAAGGTTTGCTTGTAACACTGCTTGCAGGAATGCTCCCTTCTCT  1031

seq1  GTCACTCAGACTCTCTGCTTCTTCTCTTCTGCAGCACTTCTCAGTGTTAA  1097
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTCACTCAGACTCTCTGCTTCTTCTATTCTGCAGCACTTCTCAGTGTTAA  1081

seq1  GAAAGAGAATTC  1109
      ||||||||||||
seq2  GAAAGAGAATTC  1093

seq1: chr17_76710585_76711630
seq2: B6Ng01-233K23.g_66_1109

seq1  GAATTCAGAAGTTGGATCCAGTTTGTGTATTTGCTAACCCCAGAGATATG  50
      ||||||  ||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGTTGGATCCGGTTTGTGTATTTGCTAACCCCAGAGATATG  50

seq1  CTGAGTGGGTCTTTGAAATCTTTAGGACTTCAGGGCCAAGTTATGCCCAC  100
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  CTGAGTGGGTCTTTGAAATCTTTAGGACTTCCCGGCCAAGTTATGCCCAC  100

seq1  AAATTCCCTAGATGAACATCCTGAAATAAAATTAGGAATTTGTATTTACT  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCTGGATGAACATCCTGAAATAAAATTAGGAATTTGTATTTACT  150

seq1  TTTATCTGAATGTTGGAACGTTAATAAAAATCTTTTGTATTAAATTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGAATGTTGGAACGTTAATAAAAATCTTTTGTATTAAATTATTG  200

seq1  ATCAAAATAAAGACAAAAAAAAAATAGGAACCAAATCTAAGCCCTCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATAAAGACAAAAAAAAAATAGGAACCAAATCTAAGCCCTCTGTG  250

seq1  ATTCAGCTAGAAAGAAACAAGTCTTGAAACAGTTTGTATCTAATGCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTAGAAAGAAACAAGTCTTGAAACAGTTTGTATCTAATGCCAAA  300

seq1  TATTTTAAGCACCCTAAAGTGTAAATCATAAATGTAGAAAGCTAATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGCACCCTAAAGTGTAAATCATAAATGTAGAAAGCTAATAAAG  350

seq1  CCAATGAAAACTCTCTCTGAAGGGATAATATTAAATTAGACTTAAATCAT  400
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCAATGAAAACTCTCTCTGAAGGGATAATATTAAATTATACTTAAATCAT  400

seq1  ATGGAGCAAAGTGTCCAAATGGTCCCTCCATCATGGAAAGAAAAATGGAA  450
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGGAGCAAAGTGTCCAAATGGCCCCTCCATCATGGAAAGAAAAATGGAA  450

seq1  CAAGGGAGAAAAGACACAGCAATACAAGCAAGTGAAAAGTATAACAGCAT  500
      ||||||||||||||||||||||||||||||||||| |||||||||  |||
seq2  CAAGGGAGAAAAGACACAGCAATACAAGCAAGTGAGAAGTATAACTTCAT  500

seq1  CACAACATATTAAACAGATATTTATGTCTCTTGAATAGGGAACAGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACATATTAAACAGATATTTATGTCTCTTGAATAGGGAACAGAAAAA  550

seq1  TTAGACTTTTCTTAAGAATAAGAACACAGCTTGACAATAGTATTAGTTTA  600
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTTTCTAAAGAATAAGAACACAGCTTGACAATAGTATTAGTTTA  600

seq1  GATCTATGTAACATGATAGTCTAATCTTAAAGAAACAGTTTGAGAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATGTAACATGATAGTCTAATCTTAAAGAAACAGTTTGAGAATGAA  650

seq1  TAGAAATGTTAAACCATAAGTTGCATTAAAACTCAGGAAATAGATTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGTTAAACCATAAGTTGCATTAAAACTCAGGAAATAGATTTAGA  700

seq1  AAAAGGCCACAGACAGAATGTAGGAATTAAAGAAAACTAAGAAGATAAAA  750
      | ||||||||||||||||||||||||||||| || ||| | || |||  |
seq2  ATAAGGCCACAGACAGAATGTAGGAATTAAAAAAGACTGA-AATATAGCA  749

seq1  TCAAAATGAGGCATAGGAGATAAAATTTAGTACAGTGGCTTGAATAAAAA  800
      ||| ||||||||||| |||||  |||||||||||||||| ||| ||||| 
seq2  TCAGAATGAGGCATACGAGAT-CAATTTAGTACAGTGGCATGAGTAAAAT  798

seq1  ATGTCCTCCATTGTCTCTGGCACTTGAATACTGGGGTCCCAGTCTGTGAT  850
      ||||||||||||||||||||||||||||||||| ||| ||||||||||| 
seq2  ATGTCCTCCATTGTCTCTGGCACTTGAATACTGAGGT-CCAGTCTGTGAC  847

seq1  GTGTTTGGGTATGAG-GTCTGCTTGGAGCAAGTATACTATTCAGGATGGG  899
      ||||||||||||||| | ||||||||||||||||| |||| || ||||||
seq2  GTGTTTGGGTATGAGCGACTGCTTGGAGCAAGTATTCTATGCATGATGGG  897

seq1  CTTTGATGATAAAACACCCCAC-TTACTTCTAG-TTTGCTCTCTCTGCTA  947
      || ||||||||||||||||||| ||||| |||| | ||||||||| ||||
seq2  CTCTGATGATAAAACACCCCACTTTACTACTAGATCTGCTCTCTCCGCTA  947

seq1  TAAAATGTAAGCTCCCAGC-ATACTGCTCAAGCCACTATGTATCTGCAGC  996
      |  ||||||  |||| ||| |||||||||||| |||||||||||||||||
seq2  T-TAATGTAGCCTCCGAGCGATACTGCTCAAG-CACTATGTATCTGCAGC  995

seq1  TTGCTGCGGTGCCTCTCAGCTACAGTTGACCCATAGCCCTGGAACTGCAA  1046
      | |||||| || ||||||||||||||||| |||| |||||||||||||||
seq2  TGGCTGCGCTGACTCTCAGCTACAGTTGA-CCATGGCCCTGGAACTGCAA  1044