BAC Information

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BAC

Clone NameB6Ng01-236J11
Chromosome17 (Build37)
Map Location 24,833,869 - 24,969,909
singlet/doubletdoublet
Overlap geneNoxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik
Upstream geneEG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer
Downstream geneFahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236J11.bB6Ng01-236J11.g
ACCGA047772GA047773
length9941,049
definitionB6Ng01-236J11.b B6Ng01-236J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,968,915 - 24,969,909)(24,833,869 - 24,834,922)
sequence
gaattcaacgccctcttgggtttccacaggtacacaaggcacaaagatat
acatgtagacaaaacttcctatatatatcaaataaatttaaaaaattaaa
gccaggtgtagtggctcacagttttaatcctagcactgggagccagaggc
aggcagatctgtgaattcaaggctagcctggtctaaatagtgagttacag
accagctacagagctacatagtaaaaccttgtctcaaaaaaaaaaaacca
aacaaacaaaaaaagcaaaaacaacaacaacaaaaaactctaaaaaatgc
aacaatagaaatcaaaagaggagctaaggatataactcaaagaaacaact
tatgcttagaattcatgatatcctgggtttgatgctccaaccatgaaaaa
taatctctctccaacctccctctctcacccatgtcacttacagtttacgg
attctttcaagtaactgtcaatttcatcagctacatttgtctctttattt
tctcttatataattcagtaggatattggcttctggtgtatcttaaattga
aaatgcataataaggaaaaagccaagtaattattttttaaattacttcaa
aacatctagaattatcttaattgtaaaacaaaacactacaaaagaaggca
attcaacgaattatcattaaaccattaacatgtgagtcaaggtgaatcaa
catggagagatgttgccagctgttatagtgaggggcagctttagaaaacc
gtgtggtctaagactcttttgttttgttttgtttcgagacagggtttctc
tgtgtagcccctggctgtgctgaaactcactttgtagaccaggctggcct
cgaactcagaaatctgcctgcctctgcctcccaaatgctggtattaaagg
tgtgtgccaccacgcctggctggggtctaagactcttaaactgaaaacat
gatctgtaaagctacctggaggatcagttgtggggaaatattat
gaattccttccgctgcctccatgtgttcatttactctttctgcaaatatt
tgtagagtggctgctctctccaggtgctgtttcctccactgagcagaaca
aggaacaagcctccctctttagcctttaaccagtgatgcaaatgcggaaa
acccagtacaccagaatcatatttacaaaactgatgaaagctgtgcaggg
ggtgaggagacccttaggcacaggcctttgggataagaaatcagctcaaa
tgcttgacattttacagaaacaccagtgacgctgggggcagggtctaggg
aaggtagaggagatagaggcagaatccagagtccggcaaggcctacttat
gaccatggtagcaactggcatttttttccctaaaaacagagatgttgggc
aatttgggacagtggattttgtgtgtgtgtgtgtgtgtgtatttcaagac
agggtttcttagtgtaaccagtcttgactgtcctggactctctttgtaga
ccaggctggccttgatctcagaaatctacctgcctctgccacccaaatgc
tgggattaaaggcatgtgctaccccactgagaacagatttttttaaagag
acagggaggaacccagagttgggggctcctctgtgtgcatctgagagagg
cagtggctagatagagtgaagagcatctaaggttgggaggggtagacagg
ggctgtcaactgagtggtaagaggggctcacaattcctcactttttccag
cttctgtcttctgacttccaacatttctgaaaaaaagccagaaagttatt
aaaggtaatgccaagacttagctaagtaaggagattggctttatgaccta
gctactcgggagcctaagacagtaatatttcccaactttggcaaaaccct
atctcaagcaaaacaagacaaaaacaaccaaccaaaaccaaaccaaccca
agcaccaaaaaaggacccagtagttgactcagttgtctgtgtctgtacat
actgtactgtagccaagggtgaatccaagagcaagctggtaggcacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24968915_24969909
seq2: B6Ng01-236J11.b_44_1037 (reverse)

seq1  ATAATATTTCCCCACATCTATTCTTCCAGGTAGCTTTACATATTCATGTT  50
      |||||||||||||||| ||  || |||||||||||||||| | ||||| |
seq2  ATAATATTTCCCCACAACTGATCCTCCAGGTAGCTTTACAGA-TCATG-T  48

seq1  TTTCAGTTTAAGAGTCTTAGACCACAGCCAGGCGTGGTGGCACACACCTT  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTCAGTTTAAGAGTCTTAGACCCCAGCCAGGCGTGGTGGCACACACCTT  98

seq1  TAATACCAGCATTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCAGCATTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGC  148

seq1  CAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA-GGGCTACACAGAGA  199
      ||||||||||||||||||||||| ||| ||||||| ||||||||||||||
seq2  CAGCCTGGTCTACAAAGTGAGTTTCAGCACAGCCAGGGGCTACACAGAGA  198

seq1  AACCCTGTCTCGAAACAAAACAAAACAAAAGAGTCTTAGACCACACGGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTCGAAACAAAACAAAACAAAAGAGTCTTAGACCACACGGTT  248

seq1  TTCTAAAGCTGCCCCTCACTATAACAGCTGGCAACATCTCTCCATGTTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGCTGCCCCTCACTATAACAGCTGGCAACATCTCTCCATGTTGA  298

seq1  TTCACCTTGACTCACATGTTAATGGTTTAATGATAATTCGTTGAATTGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTTGACTCACATGTTAATGGTTTAATGATAATTCGTTGAATTGCC  348

seq1  TTCTTTTGTAGTGTTTTGTTTTACAATTAAGATAATTCTAGATGTTTTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGTAGTGTTTTGTTTTACAATTAAGATAATTCTAGATGTTTTGA  398

seq1  AGTAATTTAAAAAATAATTACTTGGCTTTTTCCTTATTATGCATTTTCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTTAAAAAATAATTACTTGGCTTTTTCCTTATTATGCATTTTCAA  448

seq1  TTTAAGATACACCAGAAGCCAATATCCTACTGAATTATATAAGAGAAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATACACCAGAAGCCAATATCCTACTGAATTATATAAGAGAAAAT  498

seq1  AAAGAGACAAATGTAGCTGATGAAATTGACAGTTACTTGAAAGAATCCGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACAAATGTAGCTGATGAAATTGACAGTTACTTGAAAGAATCCGT  548

seq1  AAACTGTAAGTGACATGGGTGAGAGAGGGAGGTTGGAGAGAGATTATTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTAAGTGACATGGGTGAGAGAGGGAGGTTGGAGAGAGATTATTTT  598

seq1  TCATGGTTGGAGCATCAAACCCAGGATATCATGAATTCTAAGCATAAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTTGGAGCATCAAACCCAGGATATCATGAATTCTAAGCATAAGTT  648

seq1  GTTTCTTTGAGTTATATCCTTAGCTCCTCTTTTGATTTCTATTGTTGCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGAGTTATATCCTTAGCTCCTCTTTTGATTTCTATTGTTGCAT  698

seq1  TTTTTAGAGTTTTTTGTTGTTGTTGTTTTTGCTTTTTTTGTTTGTTTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAGTTTTTTGTTGTTGTTGTTTTTGCTTTTTTTGTTTGTTTGGT  748

seq1  TTTTTTTTTTTGAGACAAGGTTTTACTATGTAGCTCTGTAGCTGGTCTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGAGACAAGGTTTTACTATGTAGCTCTGTAGCTGGTCTGT  798

seq1  AACTCACTATTTAGACCAGGCTAGCCTTGAATTCACAGATCTGCCTGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTATTTAGACCAGGCTAGCCTTGAATTCACAGATCTGCCTGCCT  848

seq1  CTGGCTCCCAGTGCTAGGATTAAAACTGTGAGCCACTACACCTGGCTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCCAGTGCTAGGATTAAAACTGTGAGCCACTACACCTGGCTTTA  898

seq1  ATTTTTTAAATTTATTTGATATATATAGGAAGTTTTGTCTACATGTATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAATTTATTTGATATATATAGGAAGTTTTGTCTACATGTATAT  948

seq1  CTTTGTGCCTTGTGTACCTGTGGAAACCCAAGAGGGCGTTGAATTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCCTTGTGTACCTGTGGAAACCCAAGAGGGCGTTGAATTC  994

seq1: chr17_24833869_24834922
seq2: B6Ng01-236J11.g_64_1112

seq1  GAATTCCTTCCGCTGCCTCCATGTGTTCATTTACTCTTTCTGCAAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCGCTGCCTCCATGTGTTCATTTACTCTTTCTGCAAATATT  50

seq1  TGTAGAGTGGCTGCTCTCTCCAGGTGCTGTTTCCTCCACTGAGCAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTGGCTGCTCTCTCCAGGTGCTGTTTCCTCCACTGAGCAGAACA  100

seq1  AGGAACAAGCCTCCCTCTTTAGCCTTTAACCAGTGATGCAAATGCGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAGCCTCCCTCTTTAGCCTTTAACCAGTGATGCAAATGCGGAAA  150

seq1  ACCCAGTACACCAGAATCATATTTACAAAACTGATGAAAGCTGTGCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTACACCAGAATCATATTTACAAAACTGATGAAAGCTGTGCAGGG  200

seq1  GGTGAGGAGACCCTTAGGCACAGGCCTTTGGGATAAGAAATCAGCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGAGACCCTTAGGCACAGGCCTTTGGGATAAGAAATCAGCTCAAA  250

seq1  TGCTTGACATTTTACAGAAACACCAGTGACGCTGGGGGCAGGGTCTAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGACATTTTACAGAAACACCAGTGACGCTGGGGGCAGGGTCTAGGG  300

seq1  AAGGTAGAGGAGATAGAGGCAGAATCCAGAGTCCGGCAAGGCCTACTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGAGGAGATAGAGGCAGAATCCAGAGTCCGGCAAGGCCTACTTAT  350

seq1  GACCATGGTAGCAACTGGCATTTTTTTCCCTAAAAACAGAGATGTTGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGGTAGCAACTGGCATTTTTTTCCCTAAAAACAGAGATGTTGGGC  400

seq1  AATTTGGGACAGTGGATTTTGTGTGTGTGTGTGTGTGTGTATTTCAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGGACAGTGGATTTTGTGTGTGTGTGTGTGTGTGTATTTCAAGAC  450

seq1  AGGGTTTCTTAGTGTAACCAGTCTTGACTGTCCTGGACTCTCTTTGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTTAGTGTAACCAGTCTTGACTGTCCTGGACTCTCTTTGTAGA  500

seq1  CCAGGCTGGCCTTGATCTCAGAAATCTACCTGCCTCTGCCACCCAAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTTGATCTCAGAAATCTACCTGCCTCTGCCACCCAAATGC  550

seq1  TGGGATTAAAGGCATGTGCTACCCCACTGAGAACAGATTTTTTTAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCATGTGCTACCCCACTGAGAACAGATTTTTTTAAAGAG  600

seq1  ACAGGGAGGAACCCAGAGTTGGGGGCTCCTCTGTGTGCATCTGAGAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGGAACCCAGAGTTGGGGGCTCCTCTGTGTGCATCTGAGAGAGG  650

seq1  CAGTGGCTAGATAGAGTGAAGAGCATCTAAGGTTGGGAGGGGTAGACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTAGATAGAGTGAAGAGCATCTAAGGTTGGGAGGGGTAGACAGG  700

seq1  GGCTGTCAACTGAGTGGTAAGAGGGGCTCACAATTCCTCAC-TTTTCCAG  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCTGTCAACTGAGTGGTAAGAGGGGCTCACAATTCCTCACTTTTTCCAG  750

seq1  CTTCTGTCTTCTGACTTCCAACATTTCTGAAAAAAAGCCAGAAAGTTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCTTCTGACTTCCAACATTTCTGAAAAAAAGCCAGAAAGTTATT  800

seq1  AAAGGTAATGCCAAGACTTAGCTAAGTAAGGAGATTGGCTTTATGACCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAATGCCAAGACTTAGCTAAGTAAGGAGATTGGCTTTATGACCTA  850

seq1  GCTACTCGGGAGCCTAAGACAGTAATA-TTCCCAACTTTGGCAAAACCCT  898
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTACTCGGGAGCCTAAGACAGTAATATTTCCCAACTTTGGCAAAACCCT  900

seq1  ATCTCAAAGCAAAACAAGACAAAAACAACCAACCAAAACCAAACCAAACC  948
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCTC-AAGCAAAACAAGACAAAAACAACCAACCAAAACCAAACC-AACC  948

seq1  AAAGCAACCAAAAAAGGACCCAGTAGTTGACTCAAGGTTGTCTGTGTCTG  998
       |||| ||||||||||||||||||||||||||||  ||||||||||||||
seq2  CAAGC-ACCAAAAAAGGACCCAGTAGTTGACTCA--GTTGTCTGTGTCTG  995

seq1  TAACATACTGTACTGTAGCCCAGGGTGGATTCAAAGAGCAAGCTGTTAGG  1048
      | |||||||||||||||||| ||||| || || |||||||||||| ||||
seq2  T-ACATACTGTACTGTAGCCAAGGGT-GAATCCAAGAGCAAGCTGGTAGG  1043

seq1  CACACC  1054
      ||||||
seq2  CACACC  1049