BAC Information

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BAC

Clone NameB6Ng01-237C02
Chromosome17 (Build37)11 (Build37)
Map Location 24,781,424 - 24,782,48928,942,351 - 28,942,522
singlet/doubletsingletsinglet
Overlap geneSlc9a3r2
Upstream geneMmp25, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1
Downstream geneNpw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237C02.bB6Ng01-237C02.g
ACCGA048174GA048175
length1,064561
definitionB6Ng01-237C02.b B6Ng01-237C02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,781,424 - 24,782,489)(28,942,351 - 28,942,522)
sequence
gaattcttcctcccagccctagccctgagcacacttcctgccttcttcag
acaggccctctggctcccacgggctctgagacacatagccatagagctgg
gcaaaccccagtccccccgccactgaacctacagccagacaaggcagata
agggggtgccctgggagccaggctctgccccccaccagataatgactcac
cagccccagcagagaaaggcccccattgtttcttggggtccatcttgtag
gcataaacatccccgagttccctgcccttccccagagattgagctaaagc
tggggtcctgactgcccagctctgcctcatcccatctgacctgagtaagc
cccagttgagagttcacaggaggggctcctggggctgaggcaggcagcat
gctagtcctggagcgagccatgagaaggggctaggagcgctggcagcagg
tggtcagagttcttggaccagctgagactgtcaccccacttatctacctc
ccactgtggcccaggttccctggggatgggtggggacatagggactgact
cattttgggtagcagggtggttactgaaccccctcccctgtccggcgtcc
cccccacccagcttggtttccgtcccaagaaaggaaggaaggaagctgct
ggaggccctgccctgctccaggacccagggcagtggagacagggagtcaa
gggaggggaccttggctggggaacagagacagtggatgggggaagggaga
agaggaacagcaggaactgggggagcccccaaagcggtcatgctaccact
ttgctcagaccattctatcccgtgaacccgacacctgcagacttgtgtca
gccataactcagtccaccatgtcccccaggaggtgcagacatggtaggac
ccaagggtggaatggcaaggtccaccactaccttcctgttcctgcactgc
tagctgctgggtctctgtttggggctgcccctgcatcacagctagaatca
gcttggctgcagctgcagtccatctccagcctgattggcctggaactgag
tcaccactgactag
gaattcatttaattttttacatgggtgtctgtgggtgtgcctgtatgtga
tctgtgtatatgcagacatcatgtcatgtgtgtggacatcatgggacaga
tccccaaagggcaggcagcaagtctcagcagcaagcaagcaggttggttt
gttgtttgtttgcttgtttgttgttggttttggttgagtttgggggttgg
cgttcttttttttttgattttttgtttttttgtttttttgcaggagtgag
tttttaaggaaaacggggggagtctgcactatggtgagttggtaagccct
gactggtcatgttagccaaataatgaattctgagtgttggactttggtgt
ttcatctcaggaatgactcagtggccaaataagggaatggaccttggcgc
tatcttcaggactatagtctaatggtgtactggctggttttgggtgtcaa
cttgacacaggctggagttatcacagagaaaggagcttcagttgaggaaa
tgcctccatgagatccagcggcaaggcattttctcaattagtgatcaagg
gggaaaggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24781424_24782489
seq2: B6Ng01-237C02.b_33_1096

seq1  GAATTCTTCCTCCCAGCCCTAGCCCTGAGCACACTTCCTGCCTTCTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTCCCAGCCCTAGCCCTGAGCACACTTCCTGCCTTCTTCAG  50

seq1  ACAGGCCCTCTGGCTCCCACGGGCTCTGAGACACATAGCCATAGAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCCTCTGGCTCCCACGGGCTCTGAGACACATAGCCATAGAGCTGG  100

seq1  GCAAACCCCAGTCCCCCCGCCACTGAACCTACAGCCAGACAAGGCAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCCAGTCCCCCCGCCACTGAACCTACAGCCAGACAAGGCAGATA  150

seq1  AGGGGGTGCCCTGGGAGCCAGGCTCTGCCCCCCACCAGATAATGACTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGCCCTGGGAGCCAGGCTCTGCCCCCCACCAGATAATGACTCAC  200

seq1  CAGCCCCAGCAGAGAAAGGCCCCCATTGTTTCTTGGGGTCCATCTTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAGCAGAGAAAGGCCCCCATTGTTTCTTGGGGTCCATCTTGTAG  250

seq1  GCATAAACATCCCCGAGTTCCCTGCCCTTCCCCAGAGATTGAGCTAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAACATCCCCGAGTTCCCTGCCCTTCCCCAGAGATTGAGCTAAAGC  300

seq1  TGGGGTCCTGACTGCCCAGCTCTGCCTCATCCCATCTGACCTGAGTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCCTGACTGCCCAGCTCTGCCTCATCCCATCTGACCTGAGTAAGC  350

seq1  CCCAGTTGAGAGTTCACAGGAGGGGCTCCTGGGGCTGAGGCAGGCAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGAGAGTTCACAGGAGGGGCTCCTGGGGCTGAGGCAGGCAGCAT  400

seq1  GCTAGTCCTGGAGCGAGCCATGAGAAGGGGCTAGGAGCGCTGGCAGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCCTGGAGCGAGCCATGAGAAGGGGCTAGGAGCGCTGGCAGCAGG  450

seq1  TGGTCAGAGTTCTTGGACCAGCTGAGACTGTCACCCCACTTATCTACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGAGTTCTTGGACCAGCTGAGACTGTCACCCCACTTATCTACCTC  500

seq1  CCACTGTGGCCCAGGTTCCCTGGGGATGGGTGGGGACATAGGGACTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGGCCCAGGTTCCCTGGGGATGGGTGGGGACATAGGGACTGACT  550

seq1  CATTTTGGGTAGCAGGGTGGTTACTGAACCCCCTCCCCTGTCCGGCGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGGTAGCAGGGTGGTTACTGAACCCCCTCCCCTGTCCGGCGTCC  600

seq1  CCCCCACCCAGCTTGGTTTCCGTCCCAAGAAAGGAAGGAAGGAAGCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCAGCTTGGTTTCCGTCCCAAGAAAGGAAGGAAGGAAGCTGCT  650

seq1  GGAGGCCCTGCCCTGCTCCAGGACCCAGGGCAGTGGAGACAGGGAGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCCTGCCCTGCTCCAGGACCCAGGGCAGTGGAGACAGGGAGTCAA  700

seq1  GGGAGGGGACCTTGGCTGGGGAACAGAGACAGTGGATGGGGGAAGGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGACCTTGGCTGGGGAACAGAGACAGTGGATGGGGGAAGGGAGA  750

seq1  AGAGGAACAGCAGGAACTGGGGGAGCCCCCAAAGCGGTCATGCTACCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACAGCAGGAACTGGGGGAGCCCCCAAAGCGGTCATGCTACCACT  800

seq1  TTGCTCAGACCATTCTATCCCGTGAACCCGACACCTGCAGACTTGTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGACCATTCTATCCCGTGAACCCGACACCTGCAGACTTGTGTCA  850

seq1  GCCATAACTCAGTCCACCATGTCCCCCAGGAGGTGCAGACATGGTAGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAACTCAGTCCACCATGTCCCCCAGGAGGTGCAGACATGGTAGGAC  900

seq1  CCAAGGGTGGAAGGGCAAGGTCCACCACTACCTCCCTGTCCCTGGCACTG  950
      |||||||||||| |||||||||||||||||||| ||||| ||| ||||||
seq2  CCAAGGGTGGAATGGCAAGGTCCACCACTACCTTCCTGTTCCT-GCACTG  949

seq1  CTAGCTGCTGGGTCTCTGTTTGGGGGCTGTCCCTGTCATCACAGCTAGAA  1000
      ||||||||||||||||||||| ||||||| ||||| ||||||||||||||
seq2  CTAGCTGCTGGGTCTCTGTTT-GGGGCTGCCCCTG-CATCACAGCTAGAA  997

seq1  TCAGC-TGGCTGCAGCTGCAG-CCACCCCCAGCCCTGAATGGCCTGGGAC  1048
      ||||| ||||||||||||||| ||| | |||| ||||| |||||||| ||
seq2  TCAGCTTGGCTGCAGCTGCAGTCCATCTCCAG-CCTGATTGGCCTGGAAC  1046

seq1  TGAGTCACCACTGACTAG  1066
      ||||||||||||||||||
seq2  TGAGTCACCACTGACTAG  1064

seq1: chr11_28942351_28942522
seq2: B6Ng01-237C02.g_485_623 (reverse)

seq1  GAGCCTTCCCCCATTGATCACTAATTGAGAAAATGCCTTACAGCTGGATC  50
      ||||||| |||| |||||||||||||||||||||||||| | ||||||||
seq2  GAGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTGCCGCTGGATC  50

seq1  TCATGGAGGCATTTCCTCACCTGAACCTCCTTTCTCTGTGATAACTCCAG  100
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  TCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAG  100

seq1  CTTGT-AAAAGTTAACACACAAAAAAAAAAAAAAAAAACCAAACAAACAA  149
      | |||   ||||| |||| |                              
seq2  CCTGTGTCAAGTTGACACCC------------------------------  120

seq1  ACAAAAAACCAGCCAGTACACCA  172
          |||||||||||||||||||
seq2  ----AAAACCAGCCAGTACACCA  139