BAC Information

Click to search

BAC

Clone NameB6Ng01-237N19
Chromosome17 (Build37)
Map Location 52,679,076 - 52,794,941
singlet/doubletdoublet
Overlap genenone
Upstream geneSatb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237N19.bB6Ng01-237N19.g
ACCGA048710GA048711
length1,1231,099
definitionB6Ng01-237N19.b B6Ng01-237N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,679,076 - 52,680,196)(52,793,827 - 52,794,941)
sequence
gaattcctggtgggggaaggtctcttcatggaatcttccacaaaactgtc
actctctaaaagtttcttaacttctgattcattttagtaacttgctgtca
ttattacagggacccagccttgtcccagtcacaggcaatcttacaccacc
cagaaaatctacttcctaggcagcttcaagccaaagtcttgaacttgcct
tgccatcaggataggtcaaattctatgaccttcaccaatgagcatctacc
atgcacccttgtatattcctgagtgggggtgtggagaaatttaacaaata
cacagggactgggagatgaatccacagaatctcatatctgtacaaatgtg
agaaccagacagcttatcaccagaaactatacaaaactatataaaatctg
tatgttcagcaaagagaaagtgagcatttctgcaacacactagctagcca
ggccagctcagatggttgacttcagctttaggaaacactcttacataata
tatataaaggaggatccatagaggaagacgttggatgtcaaccatgcatg
ccccccaaaacacacacctatgtgcacacacaaacaagcatacatactag
aactcacagcacacacaaaaataaagtaaaatcagcagtatttgtttaat
aaataaacagaagaagaaaacataattccaccttatcatccaaaaatgtg
agttaaatgtagcctggtgagatggagagaggggccagggtaagtggaag
gaggggcaactgttccccaggctgtatctttataagaagtacaactaaag
atgataataggcaatcctgtgcacatctcacttctaacctttacatacat
ttccagctccagttttgtgtttcttctgctcttgaatgagctagaccaaa
acctgtgctcaaattcctccatgtctacactaagctgatacccacagagc
actcaccatgactttttctgagttctggagacaaataggttgctttcatt
gaaacaaggtcatgcagcagtgctgtgacattttgtctgcaactcatgct
tctttcaaaattattacccactattcatgtctcaaaggttcaagacaaat
gcctaactgaaagttgactattt

gaattcaattgcaaatccaggctaaaggctataaaaaaatttaaaagtta
taacattaaaaaaacataattactccaaatgcttcatttttttttagaca
gataccattttttcatcaatgaaagaaatggtatcttcttaagatcatgt
tggaaaacagagtcaggaagtgcagcacacatctgtaactccagtgctgt
agaaggaaaggcagaagtgttgaagatccacctgagttgaagagtgaggt
ccccccatccccactctgccctctcttccttcccccctccctttctccca
tagatagagcatggctggtagagcagatctctgcaagtactagactgctt
ggaatagatacacaaagaaacaaatataaaatcagaagaacaatggtaat
tggggttaatactaaatatcattggagatgtatagccgatgaggctacac
taatatctaaatactgaaacgtgactaatctaatctctgtccaatcctta
cagaaagtctctgtgcagagtatgaaatcacaagctttgtcaagaagtgc
acattacatgttggagttagatgatgccctcattattactttaaaaaaaa
aaagcgtatgtctgagaatcaacaccttttcatcaaataagaaagaaaaa
acaatcttttaatgatatcgactttgatttgtaaaatgtaagactctgac
agagttaagataattacaaaaaaaaaaaaacaaaaacaaacaaacaaaca
aaaaaaaaaaaaacacaaccttaagatacaggaatacttgagaaaatcta
aaccactggagcaacccgcctgagatgctagttctttgggttggttatta
ctgtctttgctactttttgaagaacaaaaagcaaccttgaatccattcca
cagattgttggagctctgacttgaacacttgaagttcaatgggcagcact
actaagagcagcagatcagagttgtagaaaagttaaatcatttggagagt
gctcagaagctagagctcagtagtagatggaaagtctcacatctgtgctc
tgaatctagatgagtgccaagattatcaaatagcttgtactaacttagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52679076_52680196
seq2: B6Ng01-237N19.b_49_1171

seq1  GAATTCCTGGTGGGGGAAGGTCTCTTCATGGAATCTTCCACAAAACTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTGGGGGAAGGTCTCTTCATGGAATCTTCCACAAAACTGTC  50

seq1  ACTCTCTAAAAGTTTCTTAACTTCTGATTCATTTTAGTAACTTGCTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTAAAAGTTTCTTAACTTCTGATTCATTTTAGTAACTTGCTGTCA  100

seq1  TTATTACAGGGACCCAGCCTTGTCCCAGTCACAGGCAATCTTACACCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACAGGGACCCAGCCTTGTCCCAGTCACAGGCAATCTTACACCACC  150

seq1  CAGAAAATCTACTTCCTAGGCAGCTTCAAGCCAAAGTCTTGAACTTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCTACTTCCTAGGCAGCTTCAAGCCAAAGTCTTGAACTTGCCT  200

seq1  TGCCATCAGGATAGGTCAAATTCTATGACCTTCACCAATGAGCATCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCAGGATAGGTCAAATTCTATGACCTTCACCAATGAGCATCTACC  250

seq1  ATGCACCCTTGTATATTCCTGAGTGGGGGTGTGGAGAAATTTAACAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCCTTGTATATTCCTGAGTGGGGGTGTGGAGAAATTTAACAAATA  300

seq1  CACAGGGACTGGGAGATGAATCCACAGAATCTCATATCTGTACAAATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGACTGGGAGATGAATCCACAGAATCTCATATCTGTACAAATGTG  350

seq1  AGAACCAGACAGCTTATCACCAGAAACTATACAAAACTATATAAAATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGACAGCTTATCACCAGAAACTATACAAAACTATATAAAATCTG  400

seq1  TATGTTCAGCAAAGAGAAAGTGAGCATTTCTGCAACACACTAGCTAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAGCAAAGAGAAAGTGAGCATTTCTGCAACACACTAGCTAGCCA  450

seq1  GGCCAGCTCAGATGGTTGACTTCAGCTTTAGGAAACACTCTTACATAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTCAGATGGTTGACTTCAGCTTTAGGAAACACTCTTACATAATA  500

seq1  TATATAAAGGAGGATCCATAGAGGAAGACGTTGGATGTCAACCATGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAGGAGGATCCATAGAGGAAGACGTTGGATGTCAACCATGCATG  550

seq1  CCCCCCAAAACACACACCTATGTGCACACACAAACAAGCATACATACTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAAAACACACACCTATGTGCACACACAAACAAGCATACATACTAG  600

seq1  AACTCACAGCACACACAAAAATAAAGTAAAATCAGCAGTATTTGTTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAGCACACACAAAAATAAAGTAAAATCAGCAGTATTTGTTTAAT  650

seq1  AAATAAACAGAAGAAGAAAACATAATTCCACCTTATCATCCAAAAATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACAGAAGAAGAAAACATAATTCCACCTTATCATCCAAAAATGTG  700

seq1  AGTTAAATGTAGCCTGGTGAGATGGAGAGAGGGGCCAGGGTAAGTGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATGTAGCCTGGTGAGATGGAGAGAGGGGCCAGGGTAAGTGGAAG  750

seq1  GAGGGGCAACTGTTCCCCAGGCTGTATCTTTATAAGAAGTACAACTAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCAACTGTTCCCCAGGCTGTATCTTTATAAGAAGTACAACTAAAG  800

seq1  ATGATAATAGGCAATCCTGTGCACATCTCACTTCTAACCTTTACATACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATAGGCAATCCTGTGCACATCTCACTTCTAACCTTTACATACAT  850

seq1  TTCCAGCTCCAGTTTTGTGTTTCTTCTGCTCTTGAATGAGCTAGACCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTCCAGTTTTGTGTTTCTTCTGCTCTTGAATGAGCTAGACCAAA  900

seq1  ACCTGTGCTCAAATTCCTCCATGTCTACACTAAGCTGATACCCACAGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGCTCAAATTCCTCCATGTCTACACTAAGCTGATACCCACAGAGC  950

seq1  ACCCACCATGAC-TTTTCTGAG-TCTGGAGACAAAATAAGTTGCTTCCAT  998
      || ||||||||| ||||||||| ||||||||| ||||| ||||||| |||
seq2  ACTCACCATGACTTTTTCTGAGTTCTGGAGAC-AAATAGGTTGCTTTCAT  999

seq1  TGAAACAAAGGTCATGCAAGCAGTGCTGTGACA-TTTGTCTTGCAACTCA  1047
      |||||| |||||||||| ||||||||||||||| |||||| |||||||||
seq2  TGAAAC-AAGGTCATGC-AGCAGTGCTGTGACATTTTGTC-TGCAACTCA  1046

seq1  TGCTCCTTTCAAAAATTATTACCCACTA-TCATGTCTCAAA-GTTCAGGA  1095
      |||| ||||| ||||||||||||||||| |||||||||||| ||||| ||
seq2  TGCTTCTTTC-AAAATTATTACCCACTATTCATGTCTCAAAGGTTCAAGA  1095

seq1  CAAATGGCTAACTGAA--GTGACTATTT  1121
      |||||| |||||||||   |||||||||
seq2  CAAATGCCTAACTGAAAGTTGACTATTT  1123


seq1: chr17_52793827_52794941
seq2: B6Ng01-237N19.g_67_1165 (reverse)

seq1  GCTAAGTAAAGTACAAGGTTATTTTTGATAATCTTTGCCACCTTCATCTA  50
      |||||||  ||||||||    | |||||||||| ||| |||  |||||||
seq2  GCTAAGT-TAGTACAAG---CTATTTGATAATC-TTGGCAC--TCATCTA  43

seq1  GGATTCAGAGCACAGGAATGTGAGACTTTCCATCTAACTACTGAAGCTCC  100
       ||||||||||||||  |||||||||||||||||| ||||||| |||| |
seq2  -GATTCAGAGCACAG--ATGTGAGACTTTCCATCT-ACTACTG-AGCT-C  87

seq1  TAGCCTTTCTTGAGCACTCTCC-AATGGTTTAACCTTTTCTTACAACTCT  149
      ||||  ||| |||||||||||| |||| ||||| |||||| |||||||||
seq2  TAGC--TTC-TGAGCACTCTCCAAATGATTTAA-CTTTTC-TACAACTCT  132

seq1  GGTCTGCTGCTCTTAGTAGTGCTGCCCATTGAACTTCAAGTGTTCAAGTC  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTGCTCTTAGTAGTGCTGCCCATTGAACTTCAAGTGTTCAAGTC  182

seq1  AGAGCTCCAAC-ATCTGTGGAATGGATTCAGGGTTGC-TTTTGTTCTTCA  247
      ||||||||||| |||||||||||||||||| |||||| ||||||||||| 
seq2  AGAGCTCCAACAATCTGTGGAATGGATTCAAGGTTGCTTTTTGTTCTTC-  231

seq1  AAAAAGTAGCAAAGACAGTAATAACCAACCCAAAGAACTAGCATCTCAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAGCAAAGACAGTAATAACCAACCCAAAGAACTAGCATCTCAGG  281

seq1  CGGGTTGCTCCAGTGGTTTAGATTTTCTCAAGTATTCCTGTATCTTAAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTGCTCCAGTGGTTTAGATTTTCTCAAGTATTCCTGTATCTTAAGG  331

seq1  TTGTGTTTTTTTTTTTTTTGTTTGTTTGTTTGTTTTTGTTTTTTTTTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTTTTTTTTTTTTGTTTGTTTGTTTGTTTTTGTTTTTTTTTTTT  381

seq1  TGTAATTATCTTAACTCTGTCAGAGTCTTACATTTTACAAATCAAAGTCG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTATCTTAACTCTGTCAGAGTCTTACATTTTACAAATCAAAGTCG  431

seq1  ATATCATTAAAAGATTGTTTTTTCTTTCTTATTTGATGAAAAGGTGTTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTAAAAGATTGTTTTTTCTTTCTTATTTGATGAAAAGGTGTTGA  481

seq1  TTCTCAGACATACGCTTTTTTTTTTTAAAGTAATAATGAGGGCATCATCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGACATACGCTTTTTTTTTTTAAAGTAATAATGAGGGCATCATCT  531

seq1  AACTCCAACATGTAATGTGCACTTCTTGACAAAGCTTGTGATTTCATACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAACATGTAATGTGCACTTCTTGACAAAGCTTGTGATTTCATACT  581

seq1  CTGCACAGAGACTTTCTGTAAGGATTGGACAGAGATTAGATTAGTCACGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGAGACTTTCTGTAAGGATTGGACAGAGATTAGATTAGTCACGT  631

seq1  TTCAGTATTTAGATATTAGTGTAGCCTCATCGGCTATACATCTCCAATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATTTAGATATTAGTGTAGCCTCATCGGCTATACATCTCCAATGA  681

seq1  TATTTAGTATTAACCCCAATTACCATTGTTCTTCTGATTTTATATTTGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTATTAACCCCAATTACCATTGTTCTTCTGATTTTATATTTGTT  731

seq1  TCTTTGTGTATCTATTCCAAGCAGTCTAGTACTTGCAGAGATCTGCTCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGTATCTATTCCAAGCAGTCTAGTACTTGCAGAGATCTGCTCTA  781

seq1  CCAGCCATGCTCTATCTATGGGAGAAAGGGAGGGGGGAAGGAAGAGAGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCATGCTCTATCTATGGGAGAAAGGGAGGGGGGAAGGAAGAGAGGG  831

seq1  CAGAGTGGGGATGGGGGGACCTCACTCTTCAACTCAGGTGGATCTTCAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGGGATGGGGGGACCTCACTCTTCAACTCAGGTGGATCTTCAAC  881

seq1  ACTTCTGCCTTTCCTTCTACAGCACTGGAGTTACAGATGTGTGCTGCACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCCTTTCCTTCTACAGCACTGGAGTTACAGATGTGTGCTGCACT  931

seq1  TCCTGACTCTGTTTTCCAACATGATCTTAAGAAGATACCATTTCTTTCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTCTGTTTTCCAACATGATCTTAAGAAGATACCATTTCTTTCAT  981

seq1  TGATGAAAAAATGGTATCTGTCTAAAAAAAAATGAAGCATTTGGAGTAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAAAAATGGTATCTGTCTAAAAAAAAATGAAGCATTTGGAGTAAT  1031

seq1  TATGTTTTTTTAATGTTATAACTTTTAAATTTTTTTATAGCCTTTAGCCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTTTAATGTTATAACTTTTAAATTTTTTTATAGCCTTTAGCCT  1081

seq1  GGATTTGCAATTGAATTC  1115
      ||||||||||||||||||
seq2  GGATTTGCAATTGAATTC  1099


| Home | SequenceCutter | Blast | Download |