BAC Information

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BAC

Clone NameB6Ng01-238C17
Chromosome17 (Build37)
Map Location 67,662,253 - 67,799,241
singlet/doubletdoublet
Overlap genePtprm
Upstream gene1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
Downstream geneLrrc30, Lama1, Arhgap28, D930040M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238C17.bB6Ng01-238C17.g
ACCGA048934GA048935
length1,1991,113
definitionB6Ng01-238C17.b B6Ng01-238C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,662,253 - 67,663,423)(67,798,149 - 67,799,241)
sequence
gaattcaattcccagcaacctcgtggtggctcacaaccatctgcaatggg
atccgataccctcttctggtgtgtctgagacagcgacggtgtatttgtat
gcataaaataaataagtaaatctaaaacaaacaaacaacaattaaaaaaa
aaaaaacctggttgctcttccagaggactcagattcaatttccagcactc
gcaatcatctgtaattctagttctagaagatgtgacactctcttctggac
tccgtgggtaccaaacacacctggcggtgcacagacgcacaggcaaagca
tccagacacgtaaggtaatttaaaaagaactaaaattaatctgggttaca
caagaatttctcctcaatgttccaaatggaactggtgttaaaactgagag
agagagaaaagccaaaccctccctcaatggcgctaggaccacctcagaat
gacgaaccctgaagatcattgtgtctggtctcagacaggtctgaccatca
gagtgaccataccatgccacccaacagtaagtccgaagacagtattctac
ccctgtgtgtctgcttcattccttacacttccaaggaagatccatggtgc
cagatgagcaggacccctccctccctctgttcttcaggcacccaacctct
cctctagtcctttgcacggaatgaaggccaggtcagctgcccagctcaca
cgatggtaaggtcaaaacgttagatcctttggctcacttctcctccatgc
acacttcctttcataatcataagcttggcatcaccaatgcttttttaaaa
attatttatttattttatgtatacgagtacacgttagctttcttcagaca
caccagaagaggacaccaaatcccattacagatgactgtgaaccaccatg
tggttgctcggaattgaactcaggacctgtggaagagcagtcagtgctct
taaccgctgagtcacctctcagctaccatcaccaatgctcaatagcccag
aagcaacccacacttgcacatcctgtccattcagccccttggagagacgc
ctgccaggtttcagcaagaaaacaaaaacgggcaacctttagaagccttt
ctgtggagggttggttgtgtccccaccctttcgagacaatgaattttccc
cccaggacacagaaaccctctgctatatctcttccttccacaaatctcg
gaattcaaaactctttatctgcacaagacgggatgtgattgccagcagtt
atgcaatgtgataaatcaatgatgtcctagggtgaatacgtgtagtcaaa
gggcagcttcagattttcatgctctcagattcacagaaagtatcactatt
gatccccagaagggggtagttgtaagtgaggatacagacagcagtaggta
aagggtcatagacaccacatatgtgtgggccttgtagcatctgtcctaca
agaaccctggtggctactgtcatcttggaaagcactttgtggtggtcatt
gacaaggatcgagtctgtgacttagacagtgactaccatctctgtctcag
ttcctcattccttctctgtgcaatgaagaggctaatgatacacagctttc
gaaaagatgatctacatttgtcttagaagggtaaactgaggctcagaaat
aaagcttagttaggagttcacaaaacagcattgagaactgatgctagcct
gtctgtctgaccctgagatcagtactcttgtctgcatatcactaaccctg
attccagaggactatgtccccttccctctgccccacccacttcacccctg
acagaatcagagacacctgttgttcatttactatcagagaagcacacaat
tctgcttgctcgtttgtgtcgtgagtaaattagggggttgatggctttaa
ctaattcacctttgcccctgagagaggagaagaacaagggaagcttgctg
aaagctgcagatggtatgggtggatgtgagcccaaagggccaggtggaga
aggcaagaaagggtcccagaagacatgtgctatcagtatcatggaagaaa
cactggttgaagagcctgccattgggcctgtattcaatcccttgcctttc
actctgtgttgactttgggaaacaatttcttctaccatcctcttatggca
ggtaggacattagctgggtgacttcgtgtctacacaccaggcaaggccag
ccatagcttcctgggtgcctattgcaggactgtctaggaagcagaaagaa
caagctctccttaactgttccacacagaacttaatttagcttacattggt
aaaatggagtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_67662253_67663423
seq2: B6Ng01-238C17.b_48_1246

seq1  GAATTCAATTCCCAGCAACCTCGTGGTGGCTCACAACCATCTGCAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCAACCTCGTGGTGGCTCACAACCATCTGCAATGGG  50

seq1  ATCCGATACCCTCTTCTGGTGTGTCTGAGACAGCGACGGTGTATTTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGATACCCTCTTCTGGTGTGTCTGAGACAGCGACGGTGTATTTGTAT  100

seq1  GCATAAAATAAATAAGTAAATCTAAAACAAACAAACAACAATTAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAATAAATAAGTAAATCTAAAACAAACAAACAACAATTAAAAAAA  150

seq1  AAAAAACCTGGTTGCTCTTCCAGAGGACTCAGATTCAATTTCCAGCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCTGGTTGCTCTTCCAGAGGACTCAGATTCAATTTCCAGCACTC  200

seq1  GCAATCATCTGTAATTCTAGTTCTAGAAGATGTGACACTCTCTTCTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATCTGTAATTCTAGTTCTAGAAGATGTGACACTCTCTTCTGGAC  250

seq1  TCCGTGGGTACCAAACACACCTGGCGGTGCACAGACGCACAGGCAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGGGTACCAAACACACCTGGCGGTGCACAGACGCACAGGCAAAGCA  300

seq1  TCCAGACACGTAAGGTAATTTAAAAAGAACTAAAATTAATCTGGGTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACACGTAAGGTAATTTAAAAAGAACTAAAATTAATCTGGGTTACA  350

seq1  CAAGAATTTCTCCTCAATGTTCCAAATGGAACTGGTGTTAAAACTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTTCTCCTCAATGTTCCAAATGGAACTGGTGTTAAAACTGAGAG  400

seq1  AGAGAGAAAAGCCAAACCCTCCCTCAATGGCGCTAGGACCACCTCAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAAGCCAAACCCTCCCTCAATGGCGCTAGGACCACCTCAGAAT  450

seq1  GACGAACCCTGAAGATCATTGTGTCTGGTCTCAGACAGGTCTGACCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAACCCTGAAGATCATTGTGTCTGGTCTCAGACAGGTCTGACCATCA  500

seq1  GAGTGACCATACCATGCCACCCAACAGTAAGTCCGAAGACAGTATTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACCATACCATGCCACCCAACAGTAAGTCCGAAGACAGTATTCTAC  550

seq1  CCCTGTGTGTCTGCTTCATTCCTTACACTTCCAAGGAAGATCCATGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTGTCTGCTTCATTCCTTACACTTCCAAGGAAGATCCATGGTGC  600

seq1  CAGATGAGCAGGACCCCTCCCTCCCTCTGTTCTTCAGGCACCCAACCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAGCAGGACCCCTCCCTCCCTCTGTTCTTCAGGCACCCAACCTCT  650

seq1  CCTCTAGTCCTTTGCACGGAATGAAGGCCAGGTCAGCTGCCCAGCTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGTCCTTTGCACGGAATGAAGGCCAGGTCAGCTGCCCAGCTCACA  700

seq1  CGATGGTAAGGTCAAAACGTTAGATCCTTTGGCTCACTTCTCCTCCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGTAAGGTCAAAACGTTAGATCCTTTGGCTCACTTCTCCTCCATGC  750

seq1  ACACTTCCTTTCATAATCATAAGCTTGGCATCACCAATGCTTTTTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCTTTCATAATCATAAGCTTGGCATCACCAATGCTTTTTTAAAA  800

seq1  ATTATTTATTTATTTTATGTATACGAGTACACGTTAGCTTTCTTCAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATTTATTTTATGTATACGAGTACACGTTAGCTTTCTTCAGACA  850

seq1  CACCAGAAGAGGACACCAAATCCCATTACAGATGACTGTGAACCACCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAGAGGACACCAAATCCCATTACAGATGACTGTGAACCACCATG  900

seq1  TGGTTGCTCGGAATTGAACTCAGGACCTGTGGAAGAGCAGTCAGTGCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTCGGAATTGAACTCAGGACCTGTGGAAGAGCAGTCAGTGCTCT  950

seq1  TAACCGCTGAGTCACCTCTCCAGCTACCATCACCAATGCTCAATAGCCCA  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAACCGCTGAGTCACCTCT-CAGCTACCATCACCAATGCTCAATAGCCCA  999

seq1  GAAGCAACCCACACTTGCACAT-CTGTCCATTCAGCCCCCT-GAGAGACG  1048
      |||||||||||||||||||||| |||||||||||||||| | ||||||||
seq2  GAAGCAACCCACACTTGCACATCCTGTCCATTCAGCCCCTTGGAGAGACG  1049

seq1  CCTG-CAGG-TTCAGC-AGAAA--CAAAACGG--CACCTTTAGGAG-CTT  1090
      |||| |||| |||||| |||||   |||||||   |||||||| || |||
seq2  CCTGCCAGGTTTCAGCAAGAAAACAAAAACGGGCAACCTTTAGAAGCCTT  1099

seq1  TC-GT-GAGGGTTG--TGTGTCCCCACC--TTCGAGAC-ATGA---TTTC  1130
      || || ||||||||  ||||||||||||  |||||||| ||||   || |
seq2  TCTGTGGAGGGTTGGTTGTGTCCCCACCCTTTCGAGACAATGAATTTTCC  1149

seq1  CCCCAG--CACAGAA--CCTCTGC---ATATCTTCCT--CACAAATCTCG  1171
      ||||||  |||||||  |||||||   || |||||||  |||||||||||
seq2  CCCCAGGACACAGAAACCCTCTGCTATATCTCTTCCTTCCACAAATCTCG  1199

seq1: chr17_67798149_67799241
seq2: B6Ng01-238C17.g_68_1180 (reverse)

seq1  GGCACT-CATTTT--CCATGTAAGCTAAATTAAG-TCTGTGTGGAACAGT  46
      |||||| ||||||  | ||||||||||||||||| |||||||||||||||
seq2  GGCACTCCATTTTACCAATGTAAGCTAAATTAAGTTCTGTGTGGAACAGT  50

seq1  --AAGAGAGCTTG-TCTTTCTGCTTCCTAGACAGTCCTGC-ATTGGCACC  92
        | ||||||||| |||||||||||||||||||||||||| || ||||||
seq2  TAAGGAGAGCTTGTTCTTTCTGCTTCCTAGACAGTCCTGCAATAGGCACC  100

seq1  CAGG-AGCTCT-GCT-GCCCTGCCTGGTGTG--GACACG-AGTCA-CCAG  135
      |||| |||| | ||| ||| |||||||||||  |||||| ||||| ||||
seq2  CAGGAAGCTATGGCTGGCCTTGCCTGGTGTGTAGACACGAAGTCACCCAG  150

seq1  CTAATGTCCTA-CTGCCATAAGAGGATGGTAGA--GAATTGTTT-CCAAA  181
      ||||||||||| |||||||||||||||||||||   |||||||| |||||
seq2  CTAATGTCCTACCTGCCATAAGAGGATGGTAGAAGAAATTGTTTCCCAAA  200

seq1  GTC-ACACAGAGTGAAAGGCAAGGGATTGAATACAGGCCCAATGGGCAAG  230
      ||| |||||||||||||||||||||||||||||||||||||||||   ||
seq2  GTCAACACAGAGTGAAAGGCAAGGGATTGAATACAGGCCCAATGG--CAG  248

seq1  GCTCTTCAACCAGTGTTTCTTCCATGATACTGATAGCACATGTCTTCTGG  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCAACCAGTGTTTCTTCCATGATACTGATAGCACATGTCTTCTGG  298

seq1  GACCC-TTCTTGCCTTCTCCACCTGGCCC-TTGGGCTCACATCCACCCAT  328
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  GACCCTTTCTTGCCTTCTCCACCTGGCCCTTTGGGCTCACATCCACCCAT  348

seq1  ACCATCTGCAGCTTTCAGCAAGCTTCCCTTGTTCTTCTCCTCTCTCAGGG  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGCAGCTTTCAGCAAGCTTCCCTTGTTCTTCTCCTCTCTCAGGG  398

seq1  GCAAAGGTGAATTAGTTAAAGCCATCAACCCCCTAATTTACTCACGACAC  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGTGAATTAGTTAAAGCCATCAACCCCCTAATTTACTCACGACAC  448

seq1  AAACGAGCAAGCAGAATTGTGTGCTTCTCTGATAGTAAATGAACAACAGG  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGCAAGCAGAATTGTGTGCTTCTCTGATAGTAAATGAACAACAGG  498

seq1  TGTCTCTGATTCTGTCAGGGGTGAAGTGGGTGGGGCAGAGGGAAGGGGAC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGATTCTGTCAGGGGTGAAGTGGGTGGGGCAGAGGGAAGGGGAC  548

seq1  ATAGTCCTCTGGAATCAGGGTTAGTGATATGCAGACAAGAGTACTGATCT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCTCTGGAATCAGGGTTAGTGATATGCAGACAAGAGTACTGATCT  598

seq1  CAGGGTCAGACAGACAGGCTAGCATCAGTTCTCAATGCTGTTTTGTGAAC  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCAGACAGACAGGCTAGCATCAGTTCTCAATGCTGTTTTGTGAAC  648

seq1  TCCTAACTAAGCTTTATTTCTGAGCCTCAGTTTACCCTTCTAAGACAAAT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTAAGCTTTATTTCTGAGCCTCAGTTTACCCTTCTAAGACAAAT  698

seq1  GTAGATCATCTTTTCGAAAGCTGTGTATCATTAGCCTCTTCATTGCACAG  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCATCTTTTCGAAAGCTGTGTATCATTAGCCTCTTCATTGCACAG  748

seq1  AGAAGGAATGAGGAACTGAGACAGAGATGGTAGTCACTGTCTAAGTCACA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAATGAGGAACTGAGACAGAGATGGTAGTCACTGTCTAAGTCACA  798

seq1  GACTCGATCCTTGTCAATGACCACCACAAAGTGCTTTCCAAGATGACAGT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGATCCTTGTCAATGACCACCACAAAGTGCTTTCCAAGATGACAGT  848

seq1  AGCCACCAGGGTTCTTGTAGGACAGATGCTACAAGGCCCACACATATGTG  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCAGGGTTCTTGTAGGACAGATGCTACAAGGCCCACACATATGTG  898

seq1  GTGTCTATGACCCTTTACCTACTGCTGTCTGTATCCTCACTTACAACTAC  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATGACCCTTTACCTACTGCTGTCTGTATCCTCACTTACAACTAC  948

seq1  CCCCTTCTGGGGATCAATAGTGATACTTTCTGTGAATCTGAGAGCATGAA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTGGGGATCAATAGTGATACTTTCTGTGAATCTGAGAGCATGAA  998

seq1  AATCTGAAGCTGCCCTTTGACTACACGTATTCACCCTAGGACATCATTGA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAGCTGCCCTTTGACTACACGTATTCACCCTAGGACATCATTGA  1048

seq1  TTTATCACATTGCATAACTGCTGGCAATCACATCCCGTCTTGTGCAGATA  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACATTGCATAACTGCTGGCAATCACATCCCGTCTTGTGCAGATA  1098

seq1  AAGAGTTTTGAATTC  1093
      |||||||||||||||
seq2  AAGAGTTTTGAATTC  1113