BAC Information

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BAC

Clone NameB6Ng01-238N19
Chromosome17 (Build37)2 (Build37)
Map Location 36,551,191 - 36,552,281146,035,219 - 146,035,256
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneH2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140
Downstream geneLOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238N19.bB6Ng01-238N19.g
ACCGA049447GA049448
length1,101427
definitionB6Ng01-238N19.b B6Ng01-238N19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,551,191 - 36,552,281)(146,035,219 - 146,035,256)
sequence
gaattccacagaaacaggactgagccactgaggtccttcatgaataagga
ggggcatatattggtggggaaagactcagagtgtcctgaaagtcacaagg
tgttccaaagaaaaactgagaaaatttctcagcttctataccctaaagct
cttcaggtgagtgatctgagttcagaagtcaggacccctccatcttccca
cagacagaccaaagtcacccatttccactacttaagggtaaggctccatc
aaattgacccatacactggaacctggagggacttgagacctcactgggtt
ttagctgcagttaagggttgaaaaggcttaatggtgtggaggcaagtatg
actttgtgtgtgtggcactggcaggcagcaattctgacctcaatggcagg
actaggatatcatactctgaagaatgtgcatggccgtgaattgcccacaa
aagggttttttccttaaggtgctatgagtgtgactgccctagtcacagag
agctcaccctgaagaagagcataagctcctacactgaagaaagcaacact
gctcagatgctcaggtaccagagagactgtggtgattggcatacaactga
agagttagttaccaggaggaaagtagatagagagttccacccaagtgcat
ggagatgctccacacaaagctgaaaactctgtaggagaggtctctgctca
cagataagaggaaccctgtgataaccttgattctgtctttcatcgaaggg
ggatgagggctccaggggtttcagtttcagtatgagaaggactcaccaaa
gggttcaccattacactaagtaaatgtctactagcctgcctgccacccag
cctttcatttcaatgtgcatcccaggggtgaaccatgacatctctaaggc
ctgatcttcttgaccagacataatttccctttcaagttctgactctaggg
tgactggagtcctctgaatcacccacccaggaccagccatctgttttcat
agagaaagacctgcagcctcctcctctgtgctggctcatgatattcagaa
aatgcttcagcgaatagaagtatccagatggggagttgaagtcctgctct
g
caagcccaaggtcttgctaaggacgaactaggactgttggaacactggcg
gatggctttagctatgtcagaattcaatcttaaaaggcacttatgatagg
aaaatattgaaagagagcacgtggatccatacactagactaacgcgggaa
tggaacgcgggaatgaaaaattactgtatgggtagggaacgctagactcc
aggaggagagcttccttgaaagtcttttgcctcatgagtgacttttaagc
ctctcggcttgtccagttgactcgaccagagagcgtagcatcctatggag
ttggagcttttgttttttatggagataaggtctggttgtggttgaggcta
gtctcaaactcccaagctccagtgctagtcttaccttagcctctctctct
ctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36551191_36552281
seq2: B6Ng01-238N19.b_45_1145 (reverse)

seq1  CAGAGCAG--CTTCAACTCCCCATCTGGATAC-TCTATTCCTTGAAGCA-  46
      ||||||||  |||||||||||||||||||||| |||||||  ||||||| 
seq2  CAGAGCAGGACTTCAACTCCCCATCTGGATACTTCTATTCGCTGAAGCAT  50

seq1  TTTCTGAATTATCATGAGCCAGCACAGAGGAGGAGGCTGCAGGTCTTTCT  96
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAA-TATCATGAGCCAGCACAGAGGAGGAGGCTGCAGGTCTTTCT  99

seq1  CTATGAAAACAGATGGCTGGTCCTGGGTGGGTGATTCAGA-GACT-CAGT  144
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  CTATGAAAACAGATGGCTGGTCCTGGGTGGGTGATTCAGAGGACTCCAGT  149

seq1  CACCCTAGAGTCAGAACTTGAA--GGGAATTATGTCTGGTCA--GAGATC  190
      ||||||||||||||||||||||  || |||||||||||||||   |||||
seq2  CACCCTAGAGTCAGAACTTGAAAGGGAAATTATGTCTGGTCAAGAAGATC  199

seq1  AGGCCTTAGAGATGTCATGGTTCA-CCCTGGGATGCACATTGAAATGAAA  239
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGCCTTAGAGATGTCATGGTTCACCCCTGGGATGCACATTGAAATGAAA  249

seq1  GGCTGGGTGGCAGGCAGGCTAGTAGACATTTACTTAGTGTAATGGTGAAC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGTGGCAGGCAGGCTAGTAGACATTTACTTAGTGTAATGGTGAAC  299

seq1  CCTTTGGTGAGTCCTTCTCATACTGAAACTGAAACCCCTGGAGCCCTCAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTGAGTCCTTCTCATACTGAAACTGAAACCCCTGGAGCCCTCAT  349

seq1  CCCCCTTCGATGAAAGACAGAATCAAGGTTATCACAGGGTTCCTCTTATC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTCGATGAAAGACAGAATCAAGGTTATCACAGGGTTCCTCTTATC  399

seq1  TGTGAGCAGAGACCTCTCCTACAGAGTTTTCAGCTTTGTGTGGAGCATCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCAGAGACCTCTCCTACAGAGTTTTCAGCTTTGTGTGGAGCATCT  449

seq1  CCATGCACTTGGGTGGAACTCTCTATCTACTTTCCTCCTGGTAACTAACT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACTTGGGTGGAACTCTCTATCTACTTTCCTCCTGGTAACTAACT  499

seq1  CTTCAGTTGTATGCCAATCACCACAGTCTCTCTGGTACCTGAGCATCTGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTGTATGCCAATCACCACAGTCTCTCTGGTACCTGAGCATCTGA  549

seq1  GCAGTGTTGCTTTCTTCAGTGTAGGAGCTTATGCTCTTCTTCAGGGTGAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTGCTTTCTTCAGTGTAGGAGCTTATGCTCTTCTTCAGGGTGAG  599

seq1  CTCTCTGTGACTAGGGCAGTCACACTCATAGCACCTTAAGGAAAAAACCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGACTAGGGCAGTCACACTCATAGCACCTTAAGGAAAAAACCC  649

seq1  TTTTGTGGGCAATTCACGGCCATGCACATTCTTCAGAGTATGATATCCTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGGCAATTCACGGCCATGCACATTCTTCAGAGTATGATATCCTA  699

seq1  GTCCTGCCATTGAGGTCAGAATTGCTGCCTGCCAGTGCCACACACACAAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCCATTGAGGTCAGAATTGCTGCCTGCCAGTGCCACACACACAAA  749

seq1  GTCATACTTGCCTCCACACCATTAAGCCTTTTCAACCCTTAACTGCAGCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACTTGCCTCCACACCATTAAGCCTTTTCAACCCTTAACTGCAGCT  799

seq1  AAAACCCAGTGAGGTCTCAAGTCCCTCCAGGTTCCAGTGTATGGGTCAAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAGTGAGGTCTCAAGTCCCTCCAGGTTCCAGTGTATGGGTCAAT  849

seq1  TTGATGGAGCCTTACCCTTAAGTAGTGGAAATGGGTGACTTTGGTCTGTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGAGCCTTACCCTTAAGTAGTGGAAATGGGTGACTTTGGTCTGTC  899

seq1  TGTGGGAAGATGGAGGGGTCCTGACTTCTGAACTCAGATCACTCACCTGA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAGATGGAGGGGTCCTGACTTCTGAACTCAGATCACTCACCTGA  949

seq1  AGAGCTTTAGGGTATAGAAGCTGAGAAATTTTCTCAGTTTTTCTTTGGAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTAGGGTATAGAAGCTGAGAAATTTTCTCAGTTTTTCTTTGGAA  999

seq1  CACCTTGTGACTTTCAGGACACTCTGAGTCTTTCCCCACCAATATATGCC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGTGACTTTCAGGACACTCTGAGTCTTTCCCCACCAATATATGCC  1049

seq1  CCTCCTTATTCATGAAGGACCTCAGTGGCTCAGTCCTGTTTCTGTGGAAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTATTCATGAAGGACCTCAGTGGCTCAGTCCTGTTTCTGTGGAAT  1099

seq1  TC  1091
      ||
seq2  TC  1101

seq1: chr2_146035219_146035256
seq2: B6Ng01-238N19.g_461_498 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  38
      ||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  38