BAC Information

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BAC

Clone NameB6Ng01-239B17
Chromosome17 (Build37)
Map Location 77,546,121 - 77,547,282
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043886, EG624348
Downstream geneLOC545234, LOC100043887, LOC668795
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239B17.bB6Ng01-239B17.g
ACCGA049624GA049625
length1,1971,163
definitionB6Ng01-239B17.b B6Ng01-239B17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttccatcttctgatattttcttcaatttccttcttcggggact
tgaagttcttgtcatacatatctttcagttctttcttaaaccatttatcc
tttgtatagaagaaggcaactgatttatttgagtgaatgttatatgcagc
ccctttgctgaagttgtgtatcacctgtacgtgttctctggtagaatttt
tgtgggtggcttgtgtatactcttctatcatctgcaaatagcaatatctt
gacttcttcctttctaaacttgtgtcccctttattccccgttgttgtctg
attattctggcaagaactttgagtactatattgaatagatagaaagacag
tgggcagacttgtcattttcctgattttagagaagtttcaagtttctctc
catttaatttgatgctggctattggtttgcttttttatgtttaggtatgt
gccctggattccttatatttccaagagtttttaaatgaaggaacattgaa
ttttaccatctaatgagatgaccatatcattttcttctttgagtttgttt
atatagaggattacgttgatagattttcatatatggaaccacacctgcat
cactgggatgaagactgcttgattgtggtgaatgttccttttcatgtatt
cttggattcgttttggaagaattttttgagtatttttgcattggtaatca
taaggaaacttgatcagaagatctctctttttttgttggatctttgtgtg
gcttcagtatcagagtaactgtgtcttcatagatcaaattaggtaatgtt
cattcttattctgtcttgtgaaatagtttgcatagtgttggtattagctc
ttcttaaatgtctgaaagaattctgccctaaaatcatctggcctgggctt
ttgttggttgggagacttttaataactgctttcatttccttatgggatta
taggagtatttacatggtttatctgatcatgatttaacgttggtacctgg
tatctgtctagcaaatcgtccatttcattagattttcagtttgctcagta
taggctttttgtgttagaactgatggtttttgatttcctcagtttctgtg
ttatgtctcttcttccatctctgatttgtaaattgaacggctcaaatctt
ctagtagctgggctaaaggattatatactaataccgtgggtaaggta

gaattctcctaagagttacaataaaccatgagatatctcaggagctcgtc
ttgacttatatttccagttgaccaatgtaactcatgatttccaatagtca
gagtgatgttgaaagaaaaacacattttaagaaatggcagttagctctcg
gtgtttaattgttcatccagagtacctaaaatgaataagaaatatttata
tttaatctagattacttagtccattctattccatcattaaggtttcagtt
tgatacaggtcttacatatcagtgtctaatatatttatacttaaccaaac
caaattatgaataattggcatatcagtctaagaaatattttatatctcaa
taaaaacttatcatttgtttaattccttgatttggtgttttttacctttc
tttaagtattggcactgctttctgttttcatttaatgtgttatattttcg
ctacatgccatatattagcactttatcttatctagcatttttgtgatttt
caatcttactggtaagctttcagctgagttgtgtttagcctaatcgagaa
taattggaacttctgaatacttgactttaggcttttgtagagggaactat
attctgaaaatgagagttgaaagctgtgaggtgttgatactcagaacgaa
aaaaatatataagtatatataaacaatagtgaattccacttacaactttg
aagcactggcatatcataaactgctatgtaaaacagcactaaatggatgc
aataaattggtttgaattgtgatatatatatatatatatatatatatata
tatatatatatatatatatatacacatacacacaaatatatatatatata
tttcctatacactaggatgtcaaagaactatttcccaatgtcttttgtat
ttggcctttcgtaatattacactcttctatatcagtatattactatcctg
tcggcaccaaaccacttgtcaagtttgagctggaggtattaaagaagaca
tctatgggaaattaaccctagaatttatatttttgtctgtgataatgact
ttagtttcaacggccatagccttcagtaagaaatagtttcatttgtcctt
gctatgaaattatggtggcaattttcttttccacgaacaaacagtctgtt
tctctattgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_77546121_77547282
seq2: B6Ng01-239B17.g_64_1226 (reverse)

seq1  TTGTCAATAGAGAAA-AGA-TGTTTGTCTGGTGG-AAAGAAATTTGC--A  45
      ||||||||||||||| ||| ||||||| | |||| ||||||| ||||   
seq2  TTGTCAATAGAGAAACAGACTGTTTGT-TCGTGGAAAAGAAAATTGCCAC  49

seq1  CATAA-TTCATAGCAAAGACAAAAGAAAACTATTTCTTTACAG-ATGCTA  93
      ||||| |||||||||| |||||| | |||||||||| |||| | | ||||
seq2  CATAATTTCATAGCAAGGACAAATG-AAACTATTTC-TTACTGAAGGCTA  97

seq1  TGGCCTATGAAAACTAAAGTCATTTAATCACAGACAAAAATATAAATTCT  143
      |||||  || ||||||||||||||  ||||||||||||||||||||||||
seq2  TGGCCGTTG-AAACTAAAGTCATT--ATCACAGACAAAAATATAAATTCT  144

seq1  A-GGTTAATTTCCCATAGATGTCTTCTTAATTACCTCCAGCTCAAACTTG  192
      | |||||||||||||||||||||||||| | |||||||||||||||||||
seq2  AGGGTTAATTTCCCATAGATGTCTTCTTTAATACCTCCAGCTCAAACTTG  194

seq1  -CAAGTGGTTTGGTACAGACAGGATAGTAAATAATACTGA-ATAGAAGAG  240
       ||||||||||||| | |||||||||||||   ||||||| |||||||||
seq2  ACAAGTGGTTTGGTGCCGACAGGATAGTAA--TATACTGATATAGAAGAG  242

seq1  TGTAATATTACGAAAGGCCAAATTACAAAAGACATTGGGAAATAGTTCTT  290
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTAATATTACGAAAGGCCAAA-TACAAAAGACATTGGGAAATAGTTCTT  291

seq1  TGACATCCTAGTGTATAGGAAATATATATATATATATTTGTGTGTATGTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCTAGTGTATAGGAAATATATATATATATATTTGTGTGTATGTG  341

seq1  TATATATATATATATATATATATATATATATATATATATATATATATATA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  391

seq1  TCACAATTCAAACCAATTTATTGCATCCATTTAGTGCTGTTTTACATAGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTCAAACCAATTTATTGCATCCATTTAGTGCTGTTTTACATAGC  441

seq1  AGTTTATGATATGCCAGTGCTTCAAAGTTGTAAGTGGAATTCACTATTGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATGATATGCCAGTGCTTCAAAGTTGTAAGTGGAATTCACTATTGT  491

seq1  TTATATATACTTATATATTTTTTTCGTTCTGAGTATCAACACCTCACAGC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATACTTATATATTTTTTTCGTTCTGAGTATCAACACCTCACAGC  541

seq1  TTTCAACTCTCATTTTCAGAATATAGTTCCCTCTACAAAAGCCTAAAGTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTCTCATTTTCAGAATATAGTTCCCTCTACAAAAGCCTAAAGTC  591

seq1  AAGTATTCAGAAGTTCCAATTATTCTCGATTAGGCTAAACACAACTCAGC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTCAGAAGTTCCAATTATTCTCGATTAGGCTAAACACAACTCAGC  641

seq1  TGAAAGCTTACCAGTAAGATTGAAAATCACAAAAATGCTAGATAAGATAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTTACCAGTAAGATTGAAAATCACAAAAATGCTAGATAAGATAA  691

seq1  AGTGCTAATATATGGCATGTAGCGAAAATATAACACATTAAATGAAAACA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAATATATGGCATGTAGCGAAAATATAACACATTAAATGAAAACA  741

seq1  GAAAGCAGTGCCAATACTTAAAGAAAGGTAAAAAACACCAAATCAAGGAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGTGCCAATACTTAAAGAAAGGTAAAAAACACCAAATCAAGGAA  791

seq1  TTAAACAAATGATAAGTTTTTATTGAGATATAAAATATTTCTTAGACTGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAATGATAAGTTTTTATTGAGATATAAAATATTTCTTAGACTGA  841

seq1  TATGCCAATTATTCATAATTTGGTTTGGTTAAGTATAAATATATTAGACA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAATTATTCATAATTTGGTTTGGTTAAGTATAAATATATTAGACA  891

seq1  CTGATATGTAAGACCTGTATCAAACTGAAACCTTAATGATGGAATAGAAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGTAAGACCTGTATCAAACTGAAACCTTAATGATGGAATAGAAT  941

seq1  GGACTAAGTAATCTAGATTAAATATAAATATTTCTTATTCATTTTAGGTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAGTAATCTAGATTAAATATAAATATTTCTTATTCATTTTAGGTA  991

seq1  CTCTGGATGAACAATTAAACACCGAGAGCTAACTGCCATTTCTTAAAATG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATGAACAATTAAACACCGAGAGCTAACTGCCATTTCTTAAAATG  1041

seq1  TGTTTTTCTTTCAACATCACTCTGACTATTGGAAATCATGAGTTACATTG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTTTCAACATCACTCTGACTATTGGAAATCATGAGTTACATTG  1091

seq1  GTCAACTGGAAATATAAGTCAAGACGAGCTCCTGAGATATCTCATGGTTT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTGGAAATATAAGTCAAGACGAGCTCCTGAGATATCTCATGGTTT  1141

seq1  ATTGTAACTCTTAGGAGAATTC  1162
      ||||||||||||||||||||||
seq2  ATTGTAACTCTTAGGAGAATTC  1163


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