BAC Information

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BAC

Clone NameB6Ng01-239L15
Chromosome17 (Build37)
Map Location 34,780,597 - 34,781,727
singlet/doubletsinglet
Overlap genenone
Upstream genePram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1
Downstream geneFkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239L15.bB6Ng01-239L15.g
ACCGA050077GA050078
length1,0521,113
definitionB6Ng01-239L15.b B6Ng01-239L15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgagaaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacaatgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaag
gaactcgcacaatatgtactcactgataaatggatattagcccagaaact
taggatacccaagatataagatacaacttgccaaacgcatgaaattcaag
aagaacgaagaccaaagtgtggatactttaccctttcttagaaatgggaa
ccaaccacccatggaaggagttacagagacaaaatttggagctgtgacga
aaggatggaccatctagtgattgccatatgcagggatccatcccataatc
agcttccaaatgctgacaccattgcatatactaacaagattttgctgaaa
ggacccagatatagctctctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctattggatggatcacaggcccccaa
tgggaggagctagagaaagtactcaaggagctaaagggatctgcaaccct
ataggtggaacatcattatgaactaaccagttacccggggagcttcttgt
ct
gaattcaggtgtgtaactatttacttgtcttcctaaactgctacgcaaag
ctcgtttgtaggctatgtatgtttaagtaagagttgggtcagagcctctt
ggtttaattatttatttaatatctccgaggacgtttgttagtacacgtat
tctttttatattctaatcagtgtaaagcttgtcagtatttcttttaccct
gtatcatcaatgaagctctgggtgtgatccacagtaccacataaatcagg
cacagtggggcatgcccgtggtcccagcatcctcttctacatagagttcc
aggccagcaagggatacacatgaccctgtcaataacaccaagaacaacat
atgccaaagtaaggtgcttagataataaggggttctcgttcccggaagaa
ctgtgctggtccagccggtgcaggcagtttgcccagcaaggctgagtcac
aaacgggatctatctacaccttctgtagggaggaggagagctgttctctg
ccgctcctctcactggagcatgggataccagttacacacgaaatatatag
gacaaactaagctggtgcggaatgaggtcactgagggatcacactgctag
cgggctggagcactatccaagaatcgcaggctccatctgagagtttcgaa
atccaggtctgcaatttaatatattttctcatgatggacatgctcattcg
agtttgaaaaacactacgattctggatcagggggctcagttgaagggcaa
tgatggatatgtggcaaaagtcaatcaaggatgagccaaaatggacaggg
gttgatttcagctaagatctctgaatttgggtataataacaggggagggt
ctgaaagcagctaaaatctcagcctttacatttgaactgaagctcgaact
tagggtcttacgcatgcttgggtaaagctctctacactgctctctctttc
ctcagcccaagtttccattttctggcctttttacattttgactaaccagt
cagcagatctttgtcacctcgggtcgaattggctaattctatgcttagtc
tagtccgttgctaagtatgcgcttcacgatgctagaaatgcgtcacatag
cgtacaggaacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34780597_34781727
seq2: B6Ng01-239L15.g_68_1180

seq1  GAATTCAGGTGTGTAACTATTTACTTGTCTTCCTAAACTGCTACGCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGTGTAACTATTTACTTGTCTTCCTAAACTGCTACGCAAAG  50

seq1  CTCGTTTGTAGGCTATGTATGTTTAAGTAAGAGTTGGGTCAGAGCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTGTAGGCTATGTATGTTTAAGTAAGAGTTGGGTCAGAGCCTCTT  100

seq1  GGTTTAATTATTTATTTAATATCTCCGAGGACGTTTGTTAGTACACGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAATTATTTATTTAATATCTCCGAGGACGTTTGTTAGTACACGTAT  150

seq1  TCTTTTTATATTCTAATCAGTGTAAAGCTTGTCAGTATTTCTTTTACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATATTCTAATCAGTGTAAAGCTTGTCAGTATTTCTTTTACCCT  200

seq1  GTATCATCAATGAAGCTCTGGGTGTGATCCACAGTACCACATAAATCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATCAATGAAGCTCTGGGTGTGATCCACAGTACCACATAAATCAGG  250

seq1  CACAGTGGGGCATGCCCGTGGTCCCAGCATCCTCTTCTACATAGAGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGGGCATGCCCGTGGTCCCAGCATCCTCTTCTACATAGAGTTCC  300

seq1  AGGCCAGCAAGGGATACACATGACCCTGTCAATAACACCAAGAACAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCAAGGGATACACATGACCCTGTCAATAACACCAAGAACAACAT  350

seq1  ATGCCAAAGTAAGGTGCTTAGATAATAAGGGGTTCTCGTTCCCGGAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAAGTAAGGTGCTTAGATAATAAGGGGTTCTCGTTCCCGGAAGAA  400

seq1  CTGTGCTGGTCCAGCCGGTGCAGGCAGTTTGCCCAGCAAGGCTGAGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGGTCCAGCCGGTGCAGGCAGTTTGCCCAGCAAGGCTGAGTCAC  450

seq1  AAACGGGATCTATCTACACCTTCTGTAGGGAGGAGGAGAGCTGTTCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGGATCTATCTACACCTTCTGTAGGGAGGAGGAGAGCTGTTCTCTG  500

seq1  CCGCTCCTCTCACTGGAGCATGGGATACCAGTTACACACGAAATATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCCTCTCACTGGAGCATGGGATACCAGTTACACACGAAATATATAG  550

seq1  GACAAACTAAGCTGGTGCGGAATGAGGTCACTGAGGGATCACACTGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACTAAGCTGGTGCGGAATGAGGTCACTGAGGGATCACACTGCTAG  600

seq1  CGGGCTGGAGCACTATCCAAGAATCGCAGGCTCCATCTGAGAGTTTCGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTGGAGCACTATCCAAGAATCGCAGGCTCCATCTGAGAGTTTCGAA  650

seq1  ATCCAGGTCTGCAATTTAATATATTTTCTCATGATGGACATGCTCATTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGTCTGCAATTTAATATATTTTCTCATGATGGACATGCTCATTCG  700

seq1  AGTTTGAAAAACACTACGATTCTGGATCAGGGGGCTCAGTTGAAGGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAAAAACACTACGATTCTGGATCAGGGGGCTCAGTTGAAGGGCAA  750

seq1  TGATGGATATGTGGCAAAAGTCAATCAAGGATGAGCCAAAATGGACAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGATATGTGGCAAAAGTCAATCAAGGATGAGCCAAAATGGACAGGG  800

seq1  GTTGATTTCAGCTAAGATCTCTGAATTTGGGTATAATAACAGGGGAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTCAGCTAAGATCTCTGAATTTGGGTATAATAACAGGGGAGGGT  850

seq1  CTGAAAGCAGCTAAAATCTCAGCCTTTACATTTGAACTGAAGCTCGAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCAGCTAAAATCTCAGCCTTTACATTTGAACTGAAGCTCGAACT  900

seq1  TAGGGTCTTTACGCATGCTT-GGTAAAGCTCTCTACCACTGCTCTCTC-T  948
      ||||||| |||||||||||| |||||||||||||| |||||||||||| |
seq2  TAGGGTC-TTACGCATGCTTGGGTAAAGCTCTCTA-CACTGCTCTCTCTT  948

seq1  TCCTCAGCCCAAGTTTCCCATTTCTGGCCTTTTTACATTTTGACTAAACC  998
      ||||||||||||||||||  ||||||||||||||||||||||||| ||||
seq2  TCCTCAGCCCAAGTTTCCATTTTCTGGCCTTTTTACATTTTGACT-AACC  997

seq1  AGTCAGCCAGATCTTTGTCAACCTCGGTTCGATTTGGCTAATTCTATTGC  1048
      |||||| |||||||||||| ||||||| |||| ||||||||||||| |||
seq2  AGTCAG-CAGATCTTTGTC-ACCTCGGGTCGAATTGGCTAATTCTA-TGC  1044

seq1  TTAGGTCTAGTCCGGTTGCTAAGGTATGGCGCTTCACGGTTGCTAGGGAA  1098
      ||| ||||||||| |||||||| |||| ||||||||| | |||||  |||
seq2  TTA-GTCTAGTCC-GTTGCTAA-GTAT-GCGCTTCAC-GATGCTA--GAA  1087

seq1  ATGGCGTCACCATAGAGGCGGGACAAGGAACCT  1131
      || |||||| |||||     | || ||||||||
seq2  AT-GCGTCA-CATAG----CGTAC-AGGAACCT  1113