BAC Information

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BAC

Clone NameB6Ng01-239O14
Chromosome9 (Build37)17 (Build37)
Map Location 28,449,516 - 28,450,54172,026,530 - 72,026,712
singlet/doubletsingletsinglet
Overlap geneOpcml
Upstream geneLOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239O14.bB6Ng01-239O14.g
ACCGA050213GA050214
length1,028202
definitionB6Ng01-239O14.b B6Ng01-239O14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,449,516 - 28,450,541)(72,026,530 - 72,026,712)
sequence
gaattctacaccaattatcttcaaaacagctggactgctggataaactct
atcttaacacacagtccaagagcaaataagaataattaaactttgatttc
agacaagactgtcaagtgaaagtggggaaactgttaaggggggttgagaa
agacagtaccaaagttaaaatccacacctcataccaaaatatgatttatc
cttattagaataatttcttaaatttagacccgagcttaataacttagcct
gctttggagattaaataattaatagcattgggatcctaaataatttttaa
aaaaattttaaaaaacaatggttatatttcatcaaaaatatattgttaat
ggaaatagcatgcaaacatcccctggacaaaactaataacacttcccaaa
tgtaaaatatgtgtaagaagaacacttcaactaagggaagctaaagccct
ggttcatgggaaatgttatgaaggattcttgccaaatgagaaatctgtaa
attacctaggtaagcaatcagctcccgattataattgccaatttgagaaa
atttcaccaacaattaagcaaaatcaaataacctatttgaggaaatggag
tggtgacaagctagcacctttcccctctcgtgaaggtttactataatttg
tttttattttcctttagaaattgaaatttcattctcttctttctgagcta
taaataataaggagccaccatggagagggtagacacatctgaacggttgt
ctctcactgatttggtttcagattgaaaataagaatggctggaaatggcc
atgacccagtaataagaatcttcaactcaaactacagaaagcacacaatt
cattatttcagtttatcatgctggattaggtccagaaattagaatacaaa
gtaaatgtcctgcagcatgggccgttagaaacgaatttgatttttccgtc
tggaaatgtctgacaatctgggccatatgttaaactaagaaacttggtga
tgtcactttcatctttcttctttctttc

aagcatggcaggaacccaaagacaggataccttagaagagtgctataagc
tgggtgtggtggcacacacctttaattgcagcactggggaggcagagaca
ggcaaatttctgagttctaggccagcctggtctacagaatgagttccagg
acagccagggctatacagagaaactttgtctcgaagaagaagaagaagaa
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28449516_28450541
seq2: B6Ng01-239O14.b_47_1074 (reverse)

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGTGACATCACCAAGTTTCTTAG-TTA  49
      ||||||||| ||||||| | |||||||||||||||||||||||||| |||
seq2  GAAAGAAAG-AAGAAAG-ATGAAAGTGACATCACCAAGTTTCTTAGTTTA  48

seq1  ACATATGG-CCAGATTGTCAGACA-TTCCAGACGGAAAAATCAAATTCGT  97
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  ACATATGGCCCAGATTGTCAGACATTTCCAGACGGAAAAATCAAATTCGT  98

seq1  TTCTAACGG-CCATGCTGCAGGACATTTACTTTGTATTCTAATTTCTGGA  146
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACGGCCCATGCTGCAGGACATTTACTTTGTATTCTAATTTCTGGA  148

seq1  CCTAATCCAGCATGATAAACTGAAATAATGAATTGTGTGCTTTCTGTAGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCCAGCATGATAAACTGAAATAATGAATTGTGTGCTTTCTGTAGT  198

seq1  TTGAGTTGAAGATTCTTATTACTGGGTCATGGCCATTTCCAGCCATTCTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTGAAGATTCTTATTACTGGGTCATGGCCATTTCCAGCCATTCTT  248

seq1  ATTTTCAATCTGAAACCAAATCAGTGAGAGACAACCGTTCAGATGTGTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAATCTGAAACCAAATCAGTGAGAGACAACCGTTCAGATGTGTCT  298

seq1  ACCCTCTCCATGGTGGCTCCTTATTATTTATAGCTCAGAAAGAAGAGAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCCATGGTGGCTCCTTATTATTTATAGCTCAGAAAGAAGAGAAT  348

seq1  GAAATTTCAATTTCTAAAGGAAAATAAAAACAAATTATAGTAAACCTTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCAATTTCTAAAGGAAAATAAAAACAAATTATAGTAAACCTTCA  398

seq1  CGAGAGGGGAAAGGTGCTAGCTTGTCACCACTCCATTTCCTCAAATAGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGGGGAAAGGTGCTAGCTTGTCACCACTCCATTTCCTCAAATAGGT  448

seq1  TATTTGATTTTGCTTAATTGTTGGTGAAATTTTCTCAAATTGGCAATTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTTTGCTTAATTGTTGGTGAAATTTTCTCAAATTGGCAATTAT  498

seq1  AATCGGGAGCTGATTGCTTACCTAGGTAATTTACAGATTTCTCATTTGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGGGAGCTGATTGCTTACCTAGGTAATTTACAGATTTCTCATTTGGC  548

seq1  AAGAATCCTTCATAACATTTCCCATGAACCAGGGCTTTAGCTTCCCTTAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCTTCATAACATTTCCCATGAACCAGGGCTTTAGCTTCCCTTAG  598

seq1  TTGAAGTGTTCTTCTTACACATATTTTACATTTGGGAAGTGTTATTAGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGTTCTTCTTACACATATTTTACATTTGGGAAGTGTTATTAGTT  648

seq1  TTGTCCAGGGGATGTTTGCATGCTATTTCCATTAACAATATATTTTTGAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAGGGGATGTTTGCATGCTATTTCCATTAACAATATATTTTTGAT  698

seq1  GAAATATAACCATTGTTTTTTAAAATTTTTTTAAAAATTATTTAGGATCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATAACCATTGTTTTTTAAAATTTTTTTAAAAATTATTTAGGATCC  748

seq1  CAATGCTATTAATTATTTAATCTCCAAAGCAGGCTAAGTTATTAAGCTCG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTATTAATTATTTAATCTCCAAAGCAGGCTAAGTTATTAAGCTCG  798

seq1  GGTCTAAATTTAAGAAATTATTCTAATAAGGATAAATCATATTTTGGTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAATTTAAGAAATTATTCTAATAAGGATAAATCATATTTTGGTAT  848

seq1  GAGGTGTGGATTTTAACTTTGGTACTGTCTTTCTCAACCCCCCTTAACAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTGGATTTTAACTTTGGTACTGTCTTTCTCAACCCCCCTTAACAG  898

seq1  TTTCCCCACTTTCACTTGACAGTCTTGTCTGAAATCAAAGTTTAATTATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCACTTTCACTTGACAGTCTTGTCTGAAATCAAAGTTTAATTATT  948

seq1  CTTATTTGCTCTTGGACTGTGTGTTAAGATAGAGTTTATCCAGCAGTCCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGCTCTTGGACTGTGTGTTAAGATAGAGTTTATCCAGCAGTCCA  998

seq1  GCTGTTTTGAAGATAATTGGTGTAGAATTC  1026
      ||||||||||||||||||||||||||||||
seq2  GCTGTTTTGAAGATAATTGGTGTAGAATTC  1028


seq1: chr17_72026530_72026712
seq2: B6Ng01-239O14.g_103_273 (reverse)

seq1  TCTTCTTCTTCTTCTTCTTTTTTTTTTTTCCGAGACAGGGTTTCTCTGTA  50
      |||||||||||||||||||           |||||||  |||||||||||
seq2  TCTTCTTCTTCTTCTTCTT-----------CGAGACAAAGTTTCTCTGTA  39

seq1  TAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAAC  100
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  TAGCCCTGGCTGTCCTGGAACTCATTCTGTAGACCAGGCTGGCCTAGAAC  89

seq1  TCAGAAATCCACCTGCTTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGC  150
      ||||||||   ||||  |||||||||| |||||||  |||||||| ||| 
seq2  TCAGAAATTTGCCTGTCTCTGCCTCCCCAGTGCTGCAATTAAAGGTGTGT  139

seq1  GCCACCACACCCGGCTCTCGTAG-ACTCTTCTAA  183
      |||||||||||| |  ||  ||| ||||||||||
seq2  GCCACCACACCCAG--CTTATAGCACTCTTCTAA  171


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