BAC Information

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BAC

Clone NameB6Ng01-240L08
Chromosome17 (Build37)
Map Location 41,732,664 - 41,733,775
singlet/doubletsinglet
Overlap genenone
Upstream geneEG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240L08.bB6Ng01-240L08.g
ACCGA050806GA050807
length1,1191,166
definitionB6Ng01-240L08.b B6Ng01-240L08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcataattaatatttatttatatatatatatatatatatata
tatatatatatatatatatgacacagtcagagaacttcctactatttttc
aattaaaatatgtataactatatcttatttttctgtctgtgattattata
aaagtgtaaaaaataattaaaattttgtactctcttgaaaatatttacct
gatatatcctgtttaaatctgctcttcactttaagttatgatacctagca
atctcaccatcactgataaatatttattttccctaggataaaaagatgta
ccatcaaaaacagtaggacttctttttgggagatgtcttgggccttaaaa
atcacttgttgaaatccttggtttaatttctatttcatacattgggtgtc
ccgcaatcacttaggtgcatgcacacatgtagtacacacaaacacctgcc
ctatttggacacatgaatgcatgtgaacatatacatgtactcaggtcaac
atctgtatacataaaattttaagaaaatacatcttaaaaagaaccaaaaa
aaaaaaagcaaaataaaagcaaaatcaaacaaacaaactggcaagattta
tcagatatggacaaatgactatcatcagtatcatgtccaattggatgatg
tggtatctaaactctttccctttccattttttttctttcattacaataaa
atcaccactggaaatttagggaaatttaaaaattatctttctttatgtgt
atgagattctaatatttgattttataattattttcaagagaatattgagt
ttatgatgtaaaataattttgcttcctatctcttcttaagacagactctt
atgttcatcagccttgaatggtactttggagacacagtaaagtaataagt
aacagcagcctgtcaccaaaagattaattgtgcccaaatattcagcaatg
cctttgcccccagcagttcaaggagctaaagaaatacaaaggtgattttt
tgtcagtttgggtactatgttttgtactacaattcaaagctggccttcat
tcaacagaatatgagttgaaataacttcatacactattgacatgtatttg
ataccttacctggcctcca
gaattccagaaaatcattaaattctttttttattttttttccttgaccca
gtatttatttagttgagagttgttcaatttccatgagtttgtagactttc
tactgcttctgttgttgaagtccaactttaatcaaaggtggtctgataag
agactgggagtcattttaattttcttgtatctgtgaatacttgctttgta
accgagtataaggtcaatttcagagaaggttctataaggtatagagaaga
agatatattcttttgtatttggtaaaatgttctataggtatctgttaggt
tcataagagttgtaacatctgttatttccatctctttggtttttgtctgg
ataacatgtccactggtgggagcagagtgttgaactatcccactattaat
atgtgaggctcagtgtgtgatttaatgtttagtaatgggacctgatgaaa
ttgaaaaagcttctttaaggcaaagggcaccatcaaaaggacaaaatggc
agtgtacagaatggtaaaagatttttaccaacttcacatttgacaaatgg
ctaaaatccacaatatataaagaattcaagaaactagacatcaacaaaac
aaataaactaattaaaaacagggtacagatctaaagggagagttatagac
taaggaatctctaatggctgagaaacattcaaggaaatgttcaatatcct
tagtcataagggaaatgcaaaacaattctgagagtccatcttaaagttaa
aatggctaagataaaaaactctagtgacagctcgtgccaggaggatgttg
cacaaaggggaacactcctccattgataatgggagtgaaaatttgtacaa
ccactttggacatcagtttggtggtttctcaaaaaaattggtaatcaatc
tacttcaatgcccaactataccactccctgggcatatacgaaaaaaagaa
ggctttaccataccgtaagacatgtggtaacctatgctgctagtaacttt
tatttgtacagccagaaactggtaaacaactagatgtactcacctgagga
attagattaaaggttgtgtaatcttatataataaagtattactcagccat
agaaccattgacttgaatggcgacatgtatgacctagaagaagatactcc
tgaggtactccaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41732664_41733775
seq2: B6Ng01-240L08.b_42_1160 (reverse)

seq1  TGGA-GCCAGGTAGGTTATC-AATACATGTCATTACCCTTATGAAGTTAT  48
      |||| |||||||| | |||| ||||||||||| ||    |||||||||||
seq2  TGGAGGCCAGGTAAGGTATCAAATACATGTCAATA-GTGTATGAAGTTAT  49

seq1  TTCAACTTCATATTCTGTTGAATGAA-GCCAGCTTTGAATTGTAGTTACA  97
      |||||| ||||||||||||||||||| |||||||||||||||||| ||||
seq2  TTCAAC-TCATATTCTGTTGAATGAAGGCCAGCTTTGAATTGTAG-TACA  97

seq1  AACAATAGTACCAAAACTGAC-AAAAATCACCTTTGTA-TTCTTTAGCTC  145
      ||  |||||||| |||||||| |||||||||||||||| |||||||||||
seq2  AAACATAGTACCCAAACTGACAAAAAATCACCTTTGTATTTCTTTAGCTC  147

seq1  C-TGAACTGCTGGGGGC-AAGGCATTGCTG-ATAATTGGGCAC-ATTAAT  191
      | ||||||||||||||| |||||||||||| ||| |||||||| ||||||
seq2  CTTGAACTGCTGGGGGCAAAGGCATTGCTGAATATTTGGGCACAATTAAT  197

seq1  CTTTTGGTGACAGGCTGCTGTTACTTATTAC-TTACTGTGTCTCCAAAGT  240
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTTTGGTGACAGGCTGCTGTTACTTATTACTTTACTGTGTCTCCAAAGT  247

seq1  ACCATTCAAGGCTGATGAACATAAGAGTCTGTCTTAAGAAGAGATAGGAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCAAGGCTGATGAACATAAGAGTCTGTCTTAAGAAGAGATAGGAA  297

seq1  GCAAAATTATTTTACATCATAAACTCAATATTCTCTTGAAAATAATTATA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTATTTTACATCATAAACTCAATATTCTCTTGAAAATAATTATA  347

seq1  AAATCAAATATTAGAATCTCATACACATAAAGAAAGATAATTTTTAAATT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAATATTAGAATCTCATACACATAAAGAAAGATAATTTTTAAATT  397

seq1  TCCCTAAATTTCCAGTGGTGATTTTATTGTAATGAAAGAAAAAAAATGGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAATTTCCAGTGGTGATTTTATTGTAATGAAAGAAAAAAAATGGA  447

seq1  AAGGGAAAGAGTTTAGATACCACATCATCCAATTGGACATGATACTGATG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAAGAGTTTAGATACCACATCATCCAATTGGACATGATACTGATG  497

seq1  ATAGTCATTTGTCCATATCTGATAAATCTTGCCAGTTTGTTTGTTTGATT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCATTTGTCCATATCTGATAAATCTTGCCAGTTTGTTTGTTTGATT  547

seq1  TTGCTTTTATTTTGCTTTTTTTTTTTTGGTTCTTTTTAAGATGTATTTTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTATTTTGCTTTTTTTTTTTTGGTTCTTTTTAAGATGTATTTTC  597

seq1  TTAAAATTTTATGTATACAGATGTTGACCTGAGTACATGTATATGTTCAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTTATGTATACAGATGTTGACCTGAGTACATGTATATGTTCAC  647

seq1  ATGCATTCATGTGTCCAAATAGGGCAGGTGTTTGTGTGTACTACATGTGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCATGTGTCCAAATAGGGCAGGTGTTTGTGTGTACTACATGTGT  697

seq1  GCATGCACCTAAGTGATTGCGGGACACCCAATGTATGAAATAGAAATTAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACCTAAGTGATTGCGGGACACCCAATGTATGAAATAGAAATTAA  747

seq1  ACCAAGGATTTCAACAAGTGATTTTTAAGGCCCAAGACATCTCCCAAAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGATTTCAACAAGTGATTTTTAAGGCCCAAGACATCTCCCAAAAA  797

seq1  GAAGTCCTACTGTTTTTGATGGTACATCTTTTTATCCTAGGGAAAATAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCTACTGTTTTTGATGGTACATCTTTTTATCCTAGGGAAAATAAA  847

seq1  TATTTATCAGTGATGGTGAGATTGCTAGGTATCATAACTTAAAGTGAAGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCAGTGATGGTGAGATTGCTAGGTATCATAACTTAAAGTGAAGA  897

seq1  GCAGATTTAAACAGGATATATCAGGTAAATATTTTCAAGAGAGTACAAAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTAAACAGGATATATCAGGTAAATATTTTCAAGAGAGTACAAAA  947

seq1  TTTTAATTATTTTTTACACTTTTATAATAATCACAGACAGAAAAATAAGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTATTTTTTACACTTTTATAATAATCACAGACAGAAAAATAAGA  997

seq1  TATAGTTATACATATTTTAATTGAAAAATAGTAGGAAGTTCTCTGACTGT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTATACATATTTTAATTGAAAAATAGTAGGAAGTTCTCTGACTGT  1047

seq1  GTCATATATATATATATATATATATATATATATATATATATATATAAATA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATATATATATATATATATATATATATATATATATATATATAAATA  1097

seq1  AATATTAATTATGAAAGAATTC  1112
      ||||||||||||||||||||||
seq2  AATATTAATTATGAAAGAATTC  1119