BAC Information

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BAC

Clone NameB6Ng01-241E11
Chromosome17 (Build37)
Map Location 12,309,733 - 12,448,260
singlet/doubletdoublet
Overlap geneAgpat4, Tdgf1-ps2, Map3k4
Upstream genePark2
Downstream gene4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241E11.bB6Ng01-241E11.g
ACCGA051237GA051238
length1,0321,162
definitionB6Ng01-241E11.b B6Ng01-241E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,309,733 - 12,310,758)(12,447,100 - 12,448,260)
sequence
gaattcaacccaccaataccttcccatccctcagataggtttctaagatc
atgagctcttagcaatattggctaacagacaaggccttagcaatagtaag
gatcagaattgaatcgtaataatgaaataaaaacattaaatattgagctt
ggggcaagagctgcaattgtcaaatttttaatttcctgctgtttttacca
aaatcactcactgtaactataatcagtgtaatgtaaatttatggaagact
cagatattattgttattgtttgtttgtttgtttgtttgtttgtttgtttg
ttttttgagatggtttttctgtataatcctggctgtcctggaactagttt
gtttgttttttgagatggtttttctgtacaatcctggctgtcctggaact
agctctgtagatcaggctggtctgaaactcagagatccatccacctgtct
ctgccttctgagcgctgagactccaggcatgttccacaacatccagcaac
aagtctcaaattctaaaattaaatttccacccaaaatgccactatgaaaa
aaaaattaactatctggaaagtatttttggaaaactcattgattcccgtc
aacaataaaatcacaaaatatgggctggtgagatggctcagcggttaaga
gcactggctactcttccaaaggtcctgagttcaaatcccagcaaccacat
ggtggctcacaaccatctctaatgaaatctgatgccctcttctggagtgt
ggaagacagctacagtgtactcacatataataaataaataaatcttaaaa
aaaataaataaaatggtatgggtcaatgtttaaaaaaagtcacaaaatat
aaacttgaaaagttataagagagaattttactgggggagaggggggtgct
gagaccatttctctatgtggccagaggggattgaatggtctagaagctag
agttaactagaacaagaactttaattattacattggattccaagaacaaa
attcggagtaatttatggttatgtcgtgtgtg
gaattcactggatagcccaggttggcctccaactcatgtcatgttagttc
taggaatgcggtcatgccgtgtgccctggctacttttgatcacacatttc
ctcacttaagaatgcgttgtttcctttccaggtacagattcccgggttag
agaatttgcacgtgtttgtccccgacagcctcgctgaggagaagaaaatt
attttgcagctactcaatgctgccacaggaaaggactgctcaaaggatcc
agacgacgtcttcatggatgccttcctgctcctgaccaagcatggggacc
gagcccgtgactcagaagatggctggggcacatgggaagctcgggctgtc
aaaattgtgcctcaggtggagactgtggacaccctgagaagcatgcaggt
gggtgggcctcccgccgtcaccgtcaaccgggatggtcggaatgcttatg
ggaaaagctctggcaacttacaagcatcaccctcgctgatctgaagagta
tgttcctaaaaatagtcctgtatggggcagtaaagcaggtgtccacacac
ctctggggctctgctggaccagccgctgcctcctcctccccacccagctg
ttctttctcttgcgctcacagtcagacatgcccccttgattgtttaagtc
aggagtgtggcagtggatgtaaacctgtcctcctacctctctggctaatc
accagcttggcagccagatgtgctcagcatacgatctgcctggtgttccc
aggccctgccacagctcagcaccattgcctttcctggacagttgtgctgc
cttctctgggtttcccctccttccctcctccagtcctccagttaggactg
tggcttgtttgaaagtgagcgtggcaataggcactgcagtaactctgtct
ctctgtctcacaccgggggagctccacctcatccccgatttttccatctt
tggtggggctgcctccaacgctctatccatctctgcccacgccctttccc
agtaggagagttggggctcttcttcctagagcttgctgccctgctgcggg
gaggttatccttagccaggccgccatctgtgcacgttagaaccttgaagg
tgtgctgctctggggttaggaagcgtcatgtctgctaatgcttgggtttg
ggtttcccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_12309733_12310758
seq2: B6Ng01-241E11.b_46_1077

seq1  GAATTCAACCCACCAATACCTTCCCATCCCTCAGATAGGTTTCTAAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCACCAATACCTTCCCATCCCTCAGATAGGTTTCTAAGATC  50

seq1  ATGAGCTCTTAGCAATATTGGCTAACAGACAAGGCCTTAGCAATAGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTCTTAGCAATATTGGCTAACAGACAAGGCCTTAGCAATAGTAAG  100

seq1  GATCAGAATTGAATCGTAATAATGAAATAAAAACATTAAATATTGAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAATTGAATCGTAATAATGAAATAAAAACATTAAATATTGAGCTT  150

seq1  GGGGCAAGAGCTGCAATTGTCAAATTTTTAATTTCCTGCTGTTTTTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGAGCTGCAATTGTCAAATTTTTAATTTCCTGCTGTTTTTACCA  200

seq1  AAATCACTCACTGTAACTATAATCAGTGTAATGTAAATTTATGGAAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTCACTGTAACTATAATCAGTGTAATGTAAATTTATGGAAGACT  250

seq1  CAGATATTATTGTTATTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTATTGTTATTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTG  300

seq1  TTTTTTGAGATGGTTTTTCTGTATAATCCTGGCTGTCCTGGAACTAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGATGGTTTTTCTGTATAATCCTGGCTGTCCTGGAACTAGTTT  350

seq1  GTTTGTTTTTTGAGATGGTTTTTCTGTACAATCCTGGCTGTCCTGGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTTGAGATGGTTTTTCTGTACAATCCTGGCTGTCCTGGAACT  400

seq1  AGCTCTGTAGATCAGGCTGGTCTGAAACTCAGAGATCCATCCACCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTAGATCAGGCTGGTCTGAAACTCAGAGATCCATCCACCTGTCT  450

seq1  CTGCCTTCTGAGCGCTGAGACTCCAGGCATGTTCCACAACATCCAGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCTGAGCGCTGAGACTCCAGGCATGTTCCACAACATCCAGCAAC  500

seq1  AAGTCTCAAATTCTAAAATTAAATTTCCACCCAAAATGCCACTATGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAAATTCTAAAATTAAATTTCCACCCAAAATGCCACTATGAAAA  550

seq1  AAAAATTAACTATCTGGAAAGTATTTTTGGAAAACTCATTGATTCCCGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAACTATCTGGAAAGTATTTTTGGAAAACTCATTGATTCCCGTC  600

seq1  AACAATAAAATCACAAAATATGGGCTGGTGAGATGGCTCAGCGGTTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAAATCACAAAATATGGGCTGGTGAGATGGCTCAGCGGTTAAGA  650

seq1  GCACTGGCTACTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGCTACTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACAT  700

seq1  GGTGGCTCACAACCATCTCTAATGAAATCTGATGCCCTCTTCTGGAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCACAACCATCTCTAATGAAATCTGATGCCCTCTTCTGGAGTGT  750

seq1  GGAAGACAGCTACAGTGTACTCACATATAATAAATAAATAAATCTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAGCTACAGTGTACTCACATATAATAAATAAATAAATCTTAAAA  800

seq1  AAAATAAATAAAATGGTAT-GGTCAATGTTTAAAAAAAGTCACAAAATAT  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAATAAATAAAATGGTATGGGTCAATGTTTAAAAAAAGTCACAAAATAT  850

seq1  -AACTTGAAAAGTTATAAGAGAGAATTTTACT-GGGGAGA-GGGGGTGCT  896
       ||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  AAACTTGAAAAGTTATAAGAGAGAATTTTACTGGGGGAGAGGGGGGTGCT  900

seq1  GAGACCATTTCTCTATGTGGCCAGAGGGGATTGAATGTTCTAGAAGCTAG  946
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGACCATTTCTCTATGTGGCCAGAGGGGATTGAATGGTCTAGAAGCTAG  950

seq1  AGTTAACAAGAACAAGAAC-TTAAATATTACATTGGATTCCAAGAACAAA  995
      ||||||| ||||||||||| |||| |||||||||||||||||||||| ||
seq2  AGTTAACTAGAACAAGAACTTTAATTATTACATTGGATTCCAAGAAC-AA  999

seq1  AATTCGGAGTAATTTAT-GTTATGT-GTGTGTG  1026
      ||||||||||||||||| ||||||| |||||||
seq2  AATTCGGAGTAATTTATGGTTATGTCGTGTGTG  1032

seq1: chr17_12447100_12448260
seq2: B6Ng01-241E11.g_65_1226 (reverse)

seq1  GGAA-GGAAACCCAAACCCAAGGCATTAAGCAGACCCATGACGGCTTTCC  49
      |||| |||||||||||||||| ||||| ||||||  |||||||   ||||
seq2  GGAAGGGAAACCCAAACCCAA-GCATT-AGCAGA--CATGACG--CTTCC  44

seq1  TACCCCCAGA-CAGCACCACCCTCAAG--TCTACCGTGCAACAGATGGCC  96
      || ||||||| ||||| |||| |||||  |||| ||||| ||||||||| 
seq2  TAACCCCAGAGCAGCA-CACCTTCAAGGTTCTAACGTGC-ACAGATGGCG  92

seq1  GCCTGGCT-AGGATAACCT-CCCGCAGGCCAGGGCAGCAAGCTCTAGGGA  144
      |||||||| |||||||||| |||||||  ||||||||||||||||| |||
seq2  GCCTGGCTAAGGATAACCTCCCCGCAG--CAGGGCAGCAAGCTCTA-GGA  139

seq1  AGAAGAGCCCC-ACTCTCC-ACTGGGAAAGGGCGTGGGCAGAGATGGATA  192
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  AGAAGAGCCCCAACTCTCCTACTGGGAAAGGGCGTGGGCAGAGATGGATA  189

seq1  GAGCGTTGGA-GCAGCCC--ACAAAGATGGAAAAATCGGGGATGAGGT-G  238
      |||||||||| |||||||   ||||||||||||||||||||||||||| |
seq2  GAGCGTTGGAGGCAGCCCCACCAAAGATGGAAAAATCGGGGATGAGGTGG  239

seq1  AGCT-CCCCGGTGTGAGACAGAGAGACAGAGTTACTGCAGTGCCTATTGC  287
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCCCGGTGTGAGACAGAGAGACAGAGTTACTGCAGTGCCTATTGC  289

seq1  CACGCTCACTTTCAAACAAGCCACAGTCCTAACTGGAGGACTGGAGGAGG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTCACTTTCAAACAAGCCACAGTCCTAACTGGAGGACTGGAGGAGG  339

seq1  GAAGGAGGGGAAACCCAGAGAAGGCAGCACAACTGTCCAGGAAAGGCAAT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGGGAAACCCAGAGAAGGCAGCACAACTGTCCAGGAAAGGCAAT  389

seq1  GGTGCCTGAGCTGTGGCAGGGCCTGGGAACACCAGGCAGATCGTATGCTG  437
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTG-CTGAGCTGTGGCAGGGCCTGGGAACACCAGGCAGATCGTATGCTG  438

seq1  AGCACATCTGGCTGCCAAGCTGGTGATTAGCCAGAGAGGTAGGAGGACAG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATCTGGCTGCCAAGCTGGTGATTAGCCAGAGAGGTAGGAGGACAG  488

seq1  GTTTACATCCACTGCCACACTCCTGACTTAAACAATCAAGGGGGCATGTC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATCCACTGCCACACTCCTGACTTAAACAATCAAGGGGGCATGTC  538

seq1  TGACTGTGAGCGCAAGAGAAAGAACAGCTGGGTGGGGAGGAGGAGGCAGC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGAGCGCAAGAGAAAGAACAGCTGGGTGGGGAGGAGGAGGCAGC  588

seq1  GGCTGGTCCAGCAGAGCCCCAGAGGTGTGTGGACACCTGCTTTACTGCCC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTCCAGCAGAGCCCCAGAGGTGTGTGGACACCTGCTTTACTGCCC  638

seq1  CATACAGGACTATTTTTAGGAACATACTCTTCAGATCAGCGAGGGTGATG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGACTATTTTTAGGAACATACTCTTCAGATCAGCGAGGGTGATG  688

seq1  CTTGTAAGTTGCCAGAGCTTTTCCCATAAGCATTCCGACCATCCCGGTTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGTTGCCAGAGCTTTTCCCATAAGCATTCCGACCATCCCGGTTG  738

seq1  ACGGTGACGGCGGGAGGCCCACCCACCTGCATGCTTCTCAGGGTGTCCAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGACGGCGGGAGGCCCACCCACCTGCATGCTTCTCAGGGTGTCCAC  788

seq1  AGTCTCCACCTGAGGCACAATTTTGACAGCCCGAGCTTCCCATGTGCCCC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCACCTGAGGCACAATTTTGACAGCCCGAGCTTCCCATGTGCCCC  838

seq1  AGCCATCTTCTGAGTCACGGGCTCGGTCCCCATGCTTGGTCAGGAGCAGG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTTCTGAGTCACGGGCTCGGTCCCCATGCTTGGTCAGGAGCAGG  888

seq1  AAGGCATCCATGAAGACGTCGTCTGGATCCTTTGAGCAGTCCTTTCCTGT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATCCATGAAGACGTCGTCTGGATCCTTTGAGCAGTCCTTTCCTGT  938

seq1  GGCAGCATTGAGTAGCTGCAAAATAATTTTCTTCTCCTCAGCGAGGCTGT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATTGAGTAGCTGCAAAATAATTTTCTTCTCCTCAGCGAGGCTGT  988

seq1  CGGGGACAAACACGTGCAAATTCTCTAACCCGGGAATCTGTACCTGGAAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGACAAACACGTGCAAATTCTCTAACCCGGGAATCTGTACCTGGAAA  1038

seq1  GGAAACAACGCATTCTTAAGTGAGGAAATGTGTGATCAAAAGTAGCCAGG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAACGCATTCTTAAGTGAGGAAATGTGTGATCAAAAGTAGCCAGG  1088

seq1  GCACACGGCATGACCGCATTCCTAGAACTAACATGACATGAGTTGGAGGC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGGCATGACCGCATTCCTAGAACTAACATGACATGAGTTGGAGGC  1138

seq1  CAACCTGGGCTATCCAGTGAATTC  1161
      ||||||||||||||||||||||||
seq2  CAACCTGGGCTATCCAGTGAATTC  1162