BAC Information

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BAC

Clone NameB6Ng01-242A22
Chromosome17 (Build37)X (Build37)
Map Location 59,109,735 - 59,110,731106,471,900 - 106,472,394
singlet/doubletsingletsinglet
Overlap gene2610034M16Rik
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648
Downstream geneNudt12, 4930505H01Rik, LOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242A22.bB6Ng01-242A22.g
ACCGA051810GA051811
length9921,005
definitionB6Ng01-242A22.b B6Ng01-242A22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,109,735 - 59,110,731)(106,471,900 - 106,472,394)
sequence
gaattcttattgtctgtcattttctcaggccgacctggttttagttctag
ctttaatttttttttttataatgtagattttctggttcattggcacagat
tgtatgcacagatttcagctaatttttagctgaagaaatcctactccaaa
gagactatgacttatctggtaaagaacttaaaattttcttcttaaagggg
taagactcataccctttcttttctattgaacttttagttcctcacacacc
cagccttatatggaggcttcttgtgcatgtctatgcatgtacacggactt
caagtggtataccagtttttttttttgtgcctatgaagatttctttttaa
acttttggtgaaacaacccaagttcttcaaagtactttctaccctgaaaa
gtgtgcaattttggcctgagatgacagcaccataatattgataaagtatc
aaagtacttgtagctcaaggaaaaccaaacttatgaaaacatttatacat
ttaaatagtatttctgtaactatcttatttctgaactgctttctgtataa
aagtgcaagggtatggtatcaggatattacacagagcaacctgatatgac
ttccctgaattcaacctacaaatactcagagtcttcacattaaagagaag
gtactgtgtaacgctgtaggtacatactgattagaaaagaaaaagaaata
aaacaaaccttcatgaaatatacagcttagtttgtaaagagactataaac
aagcaattaaatagacagaatattgaaacaaaaaatgttacatatgagaa
tataatttggaaaagggatgaacttgggatggaacaaggacagctcagac
tgcaattggaaatttggtttctgagttcttactgtgattattatgtgaag
aaaatcacagaagagattttcgcagagaagcatgccctgtatcatcaagg
gcatgagaaagagttgtggggggtgaagctgtaaagggaggg

gaattcatagcaacatgacttgttcttttatgcaaaataagcttgtacct
tatttatcagcatttaaatgcctataataaacactaaggtcatttgtaat
aagacgtgtatttctcaaaaccatgaaattcattggctgtgcttggcagc
atgtttatagcccttcaataagcacctgggtttcatataaagttatttag
tttttatttatccttcccactcttataataatatgttaaattttcattgc
taccgaaagaaaaagatggataaacctagcttacaaattacaaagtgcat
gtgaagggtttagaacagtgcctagcccctttgaggactatagttgtatg
aaacacaactttatctacatttgcctaagggactagaatgagattattta
aaggacatcatcttacttgatgaagctaagtgacaatgaaagactctttc
agaccttattttaaaaaagtgatcaggaacggacattagcaagtcatcac
ctgaatgcaaattcttttttattttttattttttttagaattaatttttt
tattaggtgttttcctcatttacatttccaatgctataccaaaagtcccc
catacccacccactcccactcccctacccacccactccccctttttggcc
ctggcattcccctgtactggggcatataaagtttgcctgtccaatgggcc
tctctttccagtgatggccgactaggccatcttttgatacatatgcagct
agagtcaagagctctggggtactggttagttcataatgttgttccaccta
tagggttgcagatccctttagctccttgggtactttctctagctcctcca
ttgggggctctgtgatccatccaatagctgactgtgagcatccacttctg
tgtttgctaggccccggcattgtctcacaatggacagctatatctggtcc
tttcatcaaaatcttgctagtgtgtgcatgtgtcagcgttggaagctgat
tatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59109735_59110731
seq2: B6Ng01-242A22.b_46_1037

seq1  GAATTCTTATTGTCTGTCATTTTCTCAGGCCGACCTGGTTTTAGTTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTGTCTGTCATTTTCTCAGGCCGACCTGGTTTTAGTTCTAG  50

seq1  CTTTAATTTTTTTTTTTATAATGTAGATTTTCTGGTTCATTGGCACAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTTTTTTTTTTATAATGTAGATTTTCTGGTTCATTGGCACAGAT  100

seq1  TGTATGCACAGATTTCAGCTAATTTTTAGCTGAAGAAATCCTACTCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCACAGATTTCAGCTAATTTTTAGCTGAAGAAATCCTACTCCAAA  150

seq1  GAGACTATGACTTATCTGGTAAAGAACTTAAAATTTTCTTCTTAAAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATGACTTATCTGGTAAAGAACTTAAAATTTTCTTCTTAAAGGGG  200

seq1  TAAGACTCATACCCTTTCTTTTCTATTGAACTTTTAGTTCCTCACACACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTCATACCCTTTCTTTTCTATTGAACTTTTAGTTCCTCACACACC  250

seq1  CAGCCTTATATGGAGGCTTCTTGTGCATGTCTATGCATGTACACGGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTATATGGAGGCTTCTTGTGCATGTCTATGCATGTACACGGACTT  300

seq1  CAAGTGGTATACCAGTTTTTTTTTTTGTGCCTATGAAGATTTCTTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGTATACCAGTTTTTTTTTTTGTGCCTATGAAGATTTCTTTTTAA  350

seq1  ACTTTTGGTGAAACAACCCAAGTTCTTCAAAGTACTTTCTACCCTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGTGAAACAACCCAAGTTCTTCAAAGTACTTTCTACCCTGAAAA  400

seq1  GTGTGCAATTTTGGCCTGAGATGACAGCACCATAATATTGATAAAGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAATTTTGGCCTGAGATGACAGCACCATAATATTGATAAAGTATC  450

seq1  AAAGTACTTGTAGCTCAAGGAAAACCAAACTTATGAAAACATTTATACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTTGTAGCTCAAGGAAAACCAAACTTATGAAAACATTTATACAT  500

seq1  TTAAATAGTATTTCTGTAACTATCTTATTTCTGAACTGCTTTCTGTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGTATTTCTGTAACTATCTTATTTCTGAACTGCTTTCTGTATAA  550

seq1  AAGTGCAAGGGTATGGTATCAGGATATTACACAGAGCAACCTGATATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAAGGGTATGGTATCAGGATATTACACAGAGCAACCTGATATGAC  600

seq1  TTCCCTGAATTCAACCTACAAATACTCAGAGTCTTCACATTAAAGAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGAATTCAACCTACAAATACTCAGAGTCTTCACATTAAAGAGAAG  650

seq1  GTACTGTGTAACGCTGTAGGTACATACTGATTAGAAAAGAAAAAGAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTGTAACGCTGTAGGTACATACTGATTAGAAAAGAAAAAGAAATA  700

seq1  AAACAAACCTTCATGAAATATACAGCTTAGTTTGTAAAGAGACTATAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACCTTCATGAAATATACAGCTTAGTTTGTAAAGAGACTATAAAC  750

seq1  AAGCAATTAAATAGACAGAATATTGAAACAAAAAATGTTACATATGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTAAATAGACAGAATATTGAAACAAAAAATGTTACATATGAGAA  800

seq1  TATAATTTGGAAAAGGGATGAACTTGGGATGGAACAAGGACAGCTCAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTGGAAAAGGGATGAACTTGGGATGGAACAAGGACAGCTCAGAC  850

seq1  TGCAATTGGAAATTTGGTTTCTGAGTTCTTACTGTGATTATTATGTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGGAAATTTGGTTTCTGAGTTCTTACTGTGATTATTATGTGAAG  900

seq1  AAAATCACAGAAGGAGATTTTCGCAGGAGAAGCATGGCCCTGTATCATCA  950
      |||||||||||| |||||||||||| ||||||||| ||||||||||||||
seq2  AAAATCACAGAA-GAGATTTTCGCA-GAGAAGCAT-GCCCTGTATCATCA  947

seq1  AGGGGCATGAAGAAAGAGGTTGT-GGGGGTGAAGCTGTAAGGGGAGGG  997
      | ||||||| ||||||| ||||| |||||||||||||||| |||||||
seq2  A-GGGCATG-AGAAAGA-GTTGTGGGGGGTGAAGCTGTAAAGGGAGGG  992


seq1: chrX_106471900_106472394
seq2: B6Ng01-242A22.g_569_1070

seq1  AATGCAAATTCTTT----TTTTTTGGGTTT-----ATTTAATTTTTTAAT  41
      ||||||||||||||    ||||||   |||     | |||||||||| ||
seq2  AATGCAAATTCTTTTTTATTTTTTATTTTTTTTAGAATTAATTTTTTTAT  50

seq1  TAGGTAATTTCCTCGTTTACATTTTCAATGCTATCCCAAAGGTCCCCCAT  91
      |||||  ||||||| ||||||||| ||||||||| ||||| |||||||||
seq2  TAGGTGTTTTCCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCAT  100

seq1  ACCCACC--CCCCCAATCCCCTACCCACCCACTCCCTGTTTTTGGCCCTG  139
      |||||||  | |||| ||||||||||||||||||||  ||||||||||||
seq2  ACCCACCCACTCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTG  150

seq1  GCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCT  189
      || ||||||||||||||||||||||||||||||  |||||||||||||||
seq2  GCATTCCCCTGTACTGGGGCATATAAAGTTTGCCTGTCCAATGGGCCTCT  200

seq1  CTTTGCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAAA  239
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGA  250

seq1  GACAGGAGCTCACGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAG  289
      | || ||||||  ||||||||||||||||||| |||||||||||||||||
seq2  GTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAG  300

seq1  GGTTGCAGTTCCCTTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTA  339
      |||||||| |||||||||||||||||||| ||||||||||||||||||| 
seq2  GGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTG  350

seq1  GGGACCGTGTGACCCATCCAATAGCTGACTGTGATCATCCACTTCTGTTT  389
      ||| |  ||||| ||||||||||||||||||||| ||||||||||||| |
seq2  GGGGCTCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGT  400

seq1  TTGCTAGGCCCCGGCATAGTCCCACAAGAGAGAGCTATATCTAGGTCCTT  439
      ||||||||||||||||| ||| |||||  || |||||||||| |||||||
seq2  TTGCTAGGCCCCGGCATTGTCTCACAATGGACAGCTATATCT-GGTCCTT  449

seq1  TCAGCGAAATCTTGCTAGTGTATGCAATGGTGTCAGCATTTGGAAGCTGA  489
      ||| | ||||||||||||||| ||||   ||||||||  |||||||||||
seq2  TCATCAAAATCTTGCTAGTGTGTGCA--TGTGTCAGC-GTTGGAAGCTGA  496

seq1  TTATGG  495
      ||||||
seq2  TTATGG  502


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