BAC Information

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BAC

Clone NameB6Ng01-242H22
Chromosome17 (Build37)
Map Location 86,398,651 - 86,552,930
singlet/doubletdoublet
Overlap geneSrbd1
Upstream genePpm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903
Downstream geneLOC545228, Prkce, Epas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242H22.bB6Ng01-242H22.g
ACCGA052122GA052123
length1,1221,148
definitionB6Ng01-242H22.b B6Ng01-242H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,551,797 - 86,552,930)(86,398,651 - 86,399,417)
sequence
gaattctccctcaggatgcccctttcacgggggtcagttatgactgctag
acaatgactctgaaatgaggctctgaatattcttcctctagcatttgcct
gctaggtcacacagcaggtctgcccttcagagtctacaagtctcttgtac
acaaactggaaccctcatcccagacaagacacctcaagtgcacacctcac
catctttattacctttctattgctgtgataagatatcatggtcccagaac
agtagctgagagcttggatctttttccataagcaccaggcagagagggcc
aactggaaatggtgagagtttttgaaacctcaaagctgggcccccagaga
cacacttcctccaacaaggccacgcctcctaatccttcccaaacagttct
gccaccagaaaccattctcattcaaaccagcacaaccaaacaacagggtt
tccaattccagtgcccacctgatgatctttgggacacattgaagtttgtt
aaggtcccttcaagtgtctgtgtgttagtcttctgttgctgtgaaataaa
ttcctcaaacctatggggcttaaacctgtcagcgtatatcatatagttcc
caaactcagaaacccaggaatggcttaactgggtggctctgctctgtgtc
ataaatctggtgaggtcccaaaagttagtggatggtgcctaaccccaatt
catcactttcatcaaaatagcattgccaacaccaacaaacccagaacctt
ccagattcaacttgacttgtcagattagcatcaaatgtaattggtagaaa
actacttaagaaccaacgtataggtgggtgtggtagccgatatccataac
cccaatgctcatgactatgacgggagagttaccatgagtttgaggccatc
ctgggctacatagtaagttccctagttaagcctgagctacagaatgaagt
cccatctcaaacaaacaacatacacaaacaacaacaaagataatgttcct
tattttaattaaatcaatttatttattttaagacagggtttcgctgtgta
gccccggctgtctgaactcattctgtcgacagctggcctagaaactcaag
agattatactacacctgacctc
gaattccaagggctggtgggcttttctatgtgttaagcctcgagttgctc
ttggacaagctgttctagtaactgcaatttttcttttgtcatggccattg
ttctacccaaaaaggcttgttagataactaccatagtggtagggccattg
gtgttctgccagcagtgtttcctccatagaaagctggagagtcagcctct
gctgagtcctgcttatgggcaccttgggcagtccatgactgctcttgata
acagtttttgatactgtcaccaggaacatctctcattttacactttgtcc
ccgataatggaggaatgcaaattcatgattctagttgttgcaatagatct
cttccccattaatgcatggctatattagccacatatggccttctatttcc
tctgtgactttctgacgctatacacttaagccatgctacactttgtttta
tctgggataaaaaagccctagaaattatattgaagaggtcaatcttgatg
acaagagtttggagagatttttgttacgtctgttccagtgtctaccacgt
cttcaatatcaatactatttataaatactttttctttgggcctctgatca
tctatagaagtttggcaaaataatattcttgttccttcttggtttgtttg
tttatctactgaatctactctgagtttgatatctgggttattaatgtcta
tcttcagagtggagttggttaattgttttgtagattagtttctccactgc
tgacctgagatgcctgatattaataatttgatattggtgtctacaagagg
actcattaggaaaatcccaacaaggggttaccctgtctgtctcttgttga
tctacattaattagtctagtatcgacctttgccccactccccacatgtac
acataacccaaataaaaaataataagtatttttaaagtttttctttgatt
acctttcattaaactttctcttttactgaaattatctcgtattcattctc
tgttattgtgttctcactaaagacattagactctataccaaccagttata
ggattctcagatttccttgccatgttggctgttatactttcaaaggaatt
gtctttcagaagcttagttataccagttgctatttcaactgtgagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_86551797_86552930
seq2: B6Ng01-242H22.b_47_1168 (reverse)

seq1  GAGG-CAGGTGTAGGTATATATCTC-TGAG-TTCTAGGCCAGCCTGGTCG  47
      |||| |||||||| ||||| ||||| |||| ||||||||||||   ||||
seq2  GAGGTCAGGTGTA-GTATA-ATCTCTTGAGTTTCTAGGCCAGC--TGTCG  46

seq1  ACAGAATGAGTTCCAGGACAGCCGGGGCTACACAGCGAAACCCTGTCTTT  97
      |||||||||||||   ||||||||||||||||||||||||||||||| ||
seq2  ACAGAATGAGTTC--AGACAGCCGGGGCTACACAGCGAAACCCTGTC-TT  93

seq1  AAAATAAATAAATTGATTTAATTAAAATAAGGAACATTTATCTTTTTGTT  147
      |||||||||||||||||||||||||||||||||||| |||||||| |  |
seq2  AAAATAAATAAATTGATTTAATTAAAATAAGGAACA-TTATCTTTGTTGT  142

seq1  TGTTTGTTTGTTGTTATTGTTGTTTTGTTTTGAGATGGGACTTCATTCTG  197
      ||||||| |        ||||||||   ||||||||||||||||||||||
seq2  TGTTTGTGT-------ATGTTGTTT--GTTTGAGATGGGACTTCATTCTG  183

seq1  TAGCTCAGGC-TAACTA-GGAACTTACTATGTAGCCCAGGATGGCCTCAA  245
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  TAGCTCAGGCTTAACTAGGGAACTTACTATGTAGCCCAGGATGGCCTCAA  233

seq1  ACTCATGGTAACTCTCCCGTCATAGTCATGAGCATTGGGGTTATGGATAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGGTAACTCTCCCGTCATAGTCATGAGCATTGGGGTTATGGATAT  283

seq1  CGGCTACCACACCCACCTATACGTTGGTTCTTAAGTAGTTTTCTACCAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTACCACACCCACCTATACGTTGGTTCTTAAGTAGTTTTCTACCAAT  333

seq1  TACATTTGATGCTAATCTGACAAGTCAAGTTGAATCTGGAAGGTTCTGGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGATGCTAATCTGACAAGTCAAGTTGAATCTGGAAGGTTCTGGG  383

seq1  TTTGTTGGTGTTGGCAATGCTATTTTGATGAAAGTGATGAATTGGGGTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGGTGTTGGCAATGCTATTTTGATGAAAGTGATGAATTGGGGTTA  433

seq1  GGCACCATCCACTAACTTTTGGGACCTCACCAGATTTATGACACAGAGCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCATCCACTAACTTTTGGGACCTCACCAGATTTATGACACAGAGCA  483

seq1  GAGCCACCCAGTTAAGCCATTCCTGGGTTTCTGAGTTTGGGAACTATATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCCAGTTAAGCCATTCCTGGGTTTCTGAGTTTGGGAACTATATG  533

seq1  ATATACGCTGACAGGTTTAAGCCCCATAGGTTTGAGGAATTTATTTCACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACGCTGACAGGTTTAAGCCCCATAGGTTTGAGGAATTTATTTCACA  583

seq1  GCAACAGAAGACTAACACACAGACACTTGAAGGGACCTTAACAAACTTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGAAGACTAACACACAGACACTTGAAGGGACCTTAACAAACTTCA  633

seq1  ATGTGTCCCAAAGATCATCAGGTGGGCACTGGAATTGGAAACCCTGTTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCCAAAGATCATCAGGTGGGCACTGGAATTGGAAACCCTGTTGT  683

seq1  TTGGTTGTGCTGGTTTGAATGAGAATGGTTTCTGGTGGCAGAACTGTTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTGCTGGTTTGAATGAGAATGGTTTCTGGTGGCAGAACTGTTTG  733

seq1  GGAAGGATTAGGAGGCGTGGCCTTGTTGGAGGAAGTGTGTCTCTGGGGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATTAGGAGGCGTGGCCTTGTTGGAGGAAGTGTGTCTCTGGGGGC  783

seq1  CCAGCTTTGAGGTTTCAAAAACTCTCACCATTTCCAGTTGGCCCTCTCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTGAGGTTTCAAAAACTCTCACCATTTCCAGTTGGCCCTCTCTG  833

seq1  CCTGGTGCTTATGGAAAAAGATCCAAGCTCTCAGCTACTGTTCTGGGACC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGCTTATGGAAAAAGATCCAAGCTCTCAGCTACTGTTCTGGGACC  883

seq1  ATGATATCTTATCACAGCAATAGAAAGGTAATAAAGATGGTGAGGTGTGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATCTTATCACAGCAATAGAAAGGTAATAAAGATGGTGAGGTGTGC  933

seq1  ACTTGAGGTGTCTTGTCTGGGATGAGGGTTCCAGTTTGTGTACAAGAGAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGTGTCTTGTCTGGGATGAGGGTTCCAGTTTGTGTACAAGAGAC  983

seq1  TTGTAGACTCTGAAGGGCAGACCTGCTGTGTGACCTAGCAGGCAAATGCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACTCTGAAGGGCAGACCTGCTGTGTGACCTAGCAGGCAAATGCT  1033

seq1  AGAGGAAGAATATTCAGAGCCTCATTTCAGAGTCATTGTCTAGCAGTCAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGAATATTCAGAGCCTCATTTCAGAGTCATTGTCTAGCAGTCAT  1083

seq1  AACTGACCCCCGTGAAAGGGGCATCCTGAGGGAGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||
seq2  AACTGACCCCCGTGAAAGGGGCATCCTGAGGGAGAATTC  1122

seq1: chr17_86398651_86399417
seq2: B6Ng01-242H22.g_455_1213

seq1  CTTCTATTTCCTCTGTGACTTTCTGACGCTATACACTTAAGCCATGCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTTCCTCTGTGACTTTCTGACGCTATACACTTAAGCCATGCTAC  50

seq1  ACTTTGTTTTATCTGGGATAAAAAAGCCCTAGAAATTATATTGAAGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTTTATCTGGGATAAAAAAGCCCTAGAAATTATATTGAAGAGGT  100

seq1  CAATCTTGATGACAAGAGTTTGGAGAGATTTTTGTTACGTCTGTTCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTGATGACAAGAGTTTGGAGAGATTTTTGTTACGTCTGTTCCAGT  150

seq1  GTCTACCACGTCTTCAATATCAATACTATTTATAAATACTTTTTCTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCACGTCTTCAATATCAATACTATTTATAAATACTTTTTCTTTGG  200

seq1  GCCTCTGATCATCTATAGAAGTTTGGCAAAATAATATTCTTGTTCCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGATCATCTATAGAAGTTTGGCAAAATAATATTCTTGTTCCTTCT  250

seq1  TGGTTTGTTTGTTTATCTACTGAATCTACTCTGAGTTTGATATCTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTTTGTTTATCTACTGAATCTACTCTGAGTTTGATATCTGGGTT  300

seq1  ATTAATGTCTATCTTCAGAGTGGAGTTGGTTAATTGTTTTGTAGATTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTCTATCTTCAGAGTGGAGTTGGTTAATTGTTTTGTAGATTAGT  350

seq1  TTCTCCACTGCTGACCTGAGATGCCTGATATTAATAATTTGATATTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACTGCTGACCTGAGATGCCTGATATTAATAATTTGATATTGGTG  400

seq1  TCTACAAGAGGACTCATTAGGAAAATCCCAACAAGGGGTTACCCTGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAGAGGACTCATTAGGAAAATCCCAACAAGGGGTTACCCTGTCTG  450

seq1  TCTCTTGTTGATCTACATTAATTAGTCTAGTATCGACCTTTGCCCCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTTGATCTACATTAATTAGTCTAGTATCGACCTTTGCCCCACTC  500

seq1  CCCACATGTACACATAA-CCAAAT-AAAAATAATAAGTATTTTTAAAAGT  548
      ||||||||||||||||| |||||| ||||||||||||||||||||||   
seq2  CCCACATGTACACATAACCCAAATAAAAAATAATAAGTATTTTTAAA--G  548

seq1  TTTTTCTTTGAATACCTTTCATTAAAC-TTCTCTTTTACTGAAAATTATC  597
      ||||||||||| ||||||||||||||| ||||||||||||| ||||||||
seq2  TTTTTCTTTGATTACCTTTCATTAAACTTTCTCTTTTACTG-AAATTATC  597

seq1  TCGGTATCATTCTCTGTTAATGTGTTCTCACTAAAAGAACATTAGACTCT  647
      |||   ||||||||||||| |||||||||||||||   ||||||||||||
seq2  TCGTATTCATTCTCTGTTATTGTGTTCTCACTAAA--GACATTAGACTCT  645

seq1  ATAACCCAACAGGTTATAGAAATTCTCAGAATTTCTTGGCATGTTGGCTG  697
      |||  |||||  |||||||  ||||||||| || |||| |||||||||||
seq2  ATA--CCAACCAGTTATAG-GATTCTCAGATTTCCTTGCCATGTTGGCTG  692

seq1  TTTATACTTTCAAAAAGGAGTTTGTCTTTCAGAGAGCCCAAGTTATACCA  747
       ||||||||||  ||||||  |||||||||||| || |  ||||||||||
seq2  -TTATACTTTC--AAAGGA-ATTGTCTTTCAGA-AG-CTTAGTTATACCA  736

seq1  GTTGCTA-TTCAAC--TGAGTTA  767
      ||||||| ||||||  |||||||
seq2  GTTGCTATTTCAACTGTGAGTTA  759