BAC Information

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BAC

Clone NameB6Ng01-242K24
Chromosome17 (Build37)
Map Location 14,979,499 - 15,122,948
singlet/doubletdoublet
Overlap geneWdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574
Upstream geneMllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236
Downstream geneLOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242K24.bB6Ng01-242K24.g
ACCGA052267GA052268
length1,0961,111
definitionB6Ng01-242K24.b B6Ng01-242K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,121,831 - 15,122,948)(14,979,499 - 14,980,613)
sequence
gaattcaagtctgatactacttacaaagtgagtgcgcaaatacctttacg
aagacatagtaaggggggacttgccaggaaaaacaatcacatcctctaag
tttgtgagtgttacaaaaggtcgatgtgccaaggtgacctttgtgtggtg
aaggtaactcttcagtaactggcccagtcctgccgtcaacagcaacatgg
ctgaacagtatctagggaaggagacagagagcccctggaaaatgaacaga
gccacatacaaagatctctccttcaacagagagtgttaaaattatgccag
gaggattgagatggatcagcagggaaaggcatctatagccaagccagatg
tcttgagttcaatccttaggcctgcatttggaaagagaaccattccccac
tatttccctttgacttccatacaatatgggcatgaataaatgagtgtaaa
aaaattaagggaattaagaaaggaaaccatcaaacttcagaactctccat
agatggaattaagctgtataataaccaggaaggctttctacctatcctgg
cacctacgcttgttcctaggagcaaaggcactgaaacacattctgtccca
cccacgctgctctgctgttggtggacaacttgaccacccatgtctcaaat
attttgtctttcacaaagaatccttccttcttgtgaaattcaaatacagc
aaattctattttttttttttttttggtttttcgagacaggatttctctgt
gtagccctggctatcctggtactcactttgtagaccaggctggcctcgaa
ctcatcttttttttttttttttttttttttaaggaagtatttatttatta
ttatatgtaagtacactgtagctgtctttcggacacctccagaagaaggg
caccagattccacctagaagaatggttgtgagccaccatgtggttgctga
ggattgaactcagacttcggaagagcagtcagtaactctaactgctggcc
atctctcaagccaaatacagcaattcttaagcgatacgagaagttactac
agcactcctgcagaaattcttgaggagcagcatgccaagacgtttc
gaattcagaagacaaacataaaggcaaagtttaagaagcacttttaaaga
acagcaaattacacacatcttagatgccaaaacaaaatgagattttcaaa
gtgttgataagtttatagcaatgaaaattttacaacaaaataagcttcca
ttcacatgggaaggaaataagagacattatcagatatataagatcaaatg
taagctcaaaatatcattgaagggaaaagtgagaaaaaaaaaagcagtgg
caacagaaacaagtgggaggagtccagcctccccagcagcagtgacatcg
agactgtaggaagcacagacaacaaccccatgtatcacaagctgcttggg
agctttcatttgtccagaaggaaacaaacgtttataacagcttcagtatt
tttcatgattaagtaataactgactaaatttcatttaaatttaattttca
ttcattaagaggtaaagataacagttaaaacaaaatagaacaaaaatcct
cagtcaacaacagagaatgttaaaaactacctgcaacttgaagcaggttt
gaactcacagcacctgagacagcatgcatagagccctgtacaagctcaaa
ccagacacaatttcagcaggagagaggagggggcatgaagtcctgcccct
agctgaggagctattggcgaatgacagctactgggagacggagggtccac
ttcctttatggttgtggctccttgttggtccatgctctagtggatgacca
cactaccagaagtatgtgggcagcacaaattaaatttgaatttttttttt
aaagaaattgagtgggcatggaaacagaggtgcatctgaaaggagttgag
gaaggaaaataaacataatcaaaatattttatacagaattctcaagaaca
tgaagaagaagagagagaaataggggatcccagtaaatgaacgccatcca
ctgtctctagtctcccaactcagacctgaggaatgctcagtctcattcca
cttggtgatctgggttaggaaccacttcatacactgcactcactgctcat
tcataactaactgctctgaaagattagtgttcccaattggttctcaggaa
caatgttgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15121831_15122948
seq2: B6Ng01-242K24.b_47_1142 (reverse)

seq1  GAAACGTCTTGTGGCATGGCTTTGCTTCCCCTCAAGATATTCCTCCAAAG  50
      |||||||||  |||||      |||| | |||||||| ||| || ||   
seq2  GAAACGTCT--TGGCA------TGCTGCTCCTCAAGA-ATTTCTGCA---  38

seq1  TGAGTTGCTGGTTAAGTAACTTTCTTCCTTAATCTGCTTAAGAATTTGCT  100
       ||| |||||    ||||||||   || |  ||| ||||||||| |||||
seq2  GGAG-TGCTG---TAGTAACTT--CTCGT--ATC-GCTTAAGAA-TTGCT  78

seq1  GTATTTGGGGCTGGAGAGATGGCTCAGCAGTTAAGAG-TACTGACTGCTC  149
      ||||||  |||| |||||||||| |||||||| |||| ||||||||||||
seq2  GTATTT--GGCTTGAGAGATGGC-CAGCAGTT-AGAGTTACTGACTGCTC  124

seq1  TTCCGAAGGTCCTGAGTTCAATTCTCAGCAACCACATGGTGGCTCACAAC  199
      ||||||||   ||||||||||| |||||||||||||||||||||||||||
seq2  TTCCGAAG--TCTGAGTTCAATCCTCAGCAACCACATGGTGGCTCACAAC  172

seq1  CAT--CTCTA-GTGGAATCTGGTGCCC-TCTTCTGGA-GTGTCCG-AAGA  243
      |||   |||| |||||||||||||||| ||||||||| ||||||| ||||
seq2  CATTCTTCTAGGTGGAATCTGGTGCCCTTCTTCTGGAGGTGTCCGAAAGA  222

seq1  CAGCTACAGTGTACTTACATATAATAATAAATAAATAACTCTTAAAAAAA  293
      |||||||||||||||||||||||||||||||||||||  || |  |||||
seq2  CAGCTACAGTGTACTTACATATAATAATAAATAAATACTTCCT-TAAAAA  271

seq1  AAAAAAAAAAAAAAAAAAAGATGAGTTCGAGGCCAGCCTGGTCTACAAAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAGATGAGTTCGAGGCCAGCCTGGTCTACAAAG  321

seq1  TGAGTACCAGGATAGCCAGGGCTACACAGAGAAATCCTGTCTCGAAAAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACCAGGATAGCCAGGGCTACACAGAGAAATCCTGTCTCGAAAAAC  371

seq1  CAAAAAAAAAAAAAAAATAGAATTTGCTGTATTTGAATTTCACAAGAAGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAATAGAATTTGCTGTATTTGAATTTCACAAGAAGG  421

seq1  AAGGATTCTTTGTGAAAGACAAAATATTTGAGACATGGGTGGTCAAGTTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTCTTTGTGAAAGACAAAATATTTGAGACATGGGTGGTCAAGTTG  471

seq1  TCCACCAACAGCAGAGCAGCGTGGGTGGGACAGAATGTGTTTCAGTGCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAACAGCAGAGCAGCGTGGGTGGGACAGAATGTGTTTCAGTGCCT  521

seq1  TTGCTCCTAGGAACAAGCGTAGGTGCCAGGATAGGTAGAAAGCCTTCCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTAGGAACAAGCGTAGGTGCCAGGATAGGTAGAAAGCCTTCCTG  571

seq1  GTTATTATACAGCTTAATTCCATCTATGGAGAGTTCTGAAGTTTGATGGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTATACAGCTTAATTCCATCTATGGAGAGTTCTGAAGTTTGATGGT  621

seq1  TTCCTTTCTTAATTCCCTTAATTTTTTTACACTCATTTATTCATGCCCAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTTAATTCCCTTAATTTTTTTACACTCATTTATTCATGCCCAT  671

seq1  ATTGTATGGAAGTCAAAGGGAAATAGTGGGGAATGGTTCTCTTTCCAAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGGAAGTCAAAGGGAAATAGTGGGGAATGGTTCTCTTTCCAAAT  721

seq1  GCAGGCCTAAGGATTGAACTCAAGACATCTGGCTTGGCTATAGATGCCTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCTAAGGATTGAACTCAAGACATCTGGCTTGGCTATAGATGCCTT  771

seq1  TCCCTGCTGATCCATCTCAATCCTCCTGGCATAATTTTAACACTCTCTGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTGATCCATCTCAATCCTCCTGGCATAATTTTAACACTCTCTGT  821

seq1  TGAAGGAGAGATCTTTGTATGTGGCTCTGTTCATTTTCCAGGGGCTCTCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGAGATCTTTGTATGTGGCTCTGTTCATTTTCCAGGGGCTCTCT  871

seq1  GTCTCCTTCCCTAGATACTGTTCAGCCATGTTGCTGTTGACGGCAGGACT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTCCCTAGATACTGTTCAGCCATGTTGCTGTTGACGGCAGGACT  921

seq1  GGGCCAGTTACTGAAGAGTTACCTTCACCACACAAAGGTCACCTTGGCAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGTTACTGAAGAGTTACCTTCACCACACAAAGGTCACCTTGGCAC  971

seq1  ATCGACCTTTTGTAACACTCACAAACTTAGAGGATGTGATTGTTTTTCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACCTTTTGTAACACTCACAAACTTAGAGGATGTGATTGTTTTTCCT  1021

seq1  GGCAAGTCCCCCCTTACTATGTCTTCGTAAAGGTATTTGCGCACTCACTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTCCCCCCTTACTATGTCTTCGTAAAGGTATTTGCGCACTCACTT  1071

seq1  TGTAAGTAGTATCAGACTTGAATTC  1118
      |||||||||||||||||||||||||
seq2  TGTAAGTAGTATCAGACTTGAATTC  1096

seq1: chr17_14979499_14980613
seq2: B6Ng01-242K24.g_65_1175

seq1  GAATTCAGAAGACAAACATAAAGGCAAAGTTTAAGAAGCACTTTTAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGACAAACATAAAGGCAAAGTTTAAGAAGCACTTTTAAAGA  50

seq1  ACAGCAAATTACACACATCTTAGATGCCAAAACAAAATGAGATTTTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATTACACACATCTTAGATGCCAAAACAAAATGAGATTTTCAAA  100

seq1  GTGTTGATAAGTTTATAGCAATGAAAATTTTACAACAAAATAAGCTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGATAAGTTTATAGCAATGAAAATTTTACAACAAAATAAGCTTCCA  150

seq1  TTCACATGGGAAGGAAATAAGAGACATTATCAGATATATAAGATCAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGGGAAGGAAATAAGAGACATTATCAGATATATAAGATCAAATG  200

seq1  TAAGCTCAAAATATCATTGAAGGGAAAAGTGAGAAAAAAAAAAGCAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCAAAATATCATTGAAGGGAAAAGTGAGAAAAAAAAAAGCAGTGG  250

seq1  CAACAGAAACAAGTGGGAGGAGTCCAGCCTCCCCAGCAGCAGTGACATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAACAAGTGGGAGGAGTCCAGCCTCCCCAGCAGCAGTGACATCG  300

seq1  AGACTGTAGGAAGCACAGACAACAACCCCATGTATCACAAGCTGCTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTAGGAAGCACAGACAACAACCCCATGTATCACAAGCTGCTTGGG  350

seq1  AGCTTTCATTTGTCCAGAAGGAAACAAACGTTTATAACAGCTTCAGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCATTTGTCCAGAAGGAAACAAACGTTTATAACAGCTTCAGTATT  400

seq1  TTTCATGATTAAGTAATAACTGACTAAATTTCATTTAAATTTAATTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGATTAAGTAATAACTGACTAAATTTCATTTAAATTTAATTTTCA  450

seq1  TTCATTAAGAGGTAAAGATAACAGTTAAAACAAAATAGAACAAAAATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAGAGGTAAAGATAACAGTTAAAACAAAATAGAACAAAAATCCT  500

seq1  CAGTCAACAACAGAGAATGTTAAAAACTACCTGCAACTTGAAGCAGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAACAACAGAGAATGTTAAAAACTACCTGCAACTTGAAGCAGGTTT  550

seq1  GAACTCACAGCACCTGAGACAGCATGCATAGAGCCCTGTACAAGCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACAGCACCTGAGACAGCATGCATAGAGCCCTGTACAAGCTCAAA  600

seq1  CCAGACACAATTTCAGCAGGAGAGAGGAGGGGGCATGAAGTCCTGCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACAATTTCAGCAGGAGAGAGGAGGGGGCATGAAGTCCTGCCCCT  650

seq1  AGCTGAGGAGCTATTGGCGAATGACAGCTACTGGGAGACGGAGGGTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGAGCTATTGGCGAATGACAGCTACTGGGAGACGGAGGGTCCAC  700

seq1  TTCCTTTATGGTTGTGGCTCCTTGTTGGTCCATGCTCTAGTGGATGACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTATGGTTGTGGCTCCTTGTTGGTCCATGCTCTAGTGGATGACCA  750

seq1  CACTACCAGAAGTATGTGGGCAGCACAAATTAAATTTGAA-TTTTTTTTT  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACTACCAGAAGTATGTGGGCAGCACAAATTAAATTTGAATTTTTTTTTT  800

seq1  AAAGAAATTGAGTGGGCATGGAAACAGAGGTGCATCTGAAAGGAGTTGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTGAGTGGGCATGGAAACAGAGGTGCATCTGAAAGGAGTTGAG  850

seq1  GAAGGAAAAATAAACATAATCAAAATATTTTATACAGAATTCTCAAAGAA  899
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAGG-AAAATAAACATAATCAAAATATTTTATACAGAATTCTC-AAGAA  898

seq1  CATGAAGAAGAAAGAGAGAGAAATAGGGGAATCCAAGTAAAATGAACGCC  949
      |||||||||| |||||||||||||||||| |||| ||| |||||||||||
seq2  CATGAAGAAG-AAGAGAGAGAAATAGGGG-ATCCCAGT-AAATGAACGCC  945

seq1  ATCCACTGTCTCTAGTCTCCCAACTCAGACCTGAGGAATGCTCAGTCTCC  999
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCCACTGTCTCTAGTCTCCCAACTCAGACCTGAGGAATGCTCAGTCT-C  994

seq1  ATTCCACTTGGTGATCTGGGTTAGGAACCACTTCATACACTGCACTCACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTTGGTGATCTGGGTTAGGAACCACTTCATACACTGCACTCACT  1044

seq1  GCTCATTCATTACTAACTGCTCTGAAAAGATTAGTGT--CCCATTGGTCT  1097
      |||||||||| ||||||||||||| ||||||||||||  || ||||||  
seq2  GCTCATTCATAACTAACTGCTCTG-AAAGATTAGTGTTCCCAATTGGTTC  1093

seq1  CCAGGGACCATGTTGCTG  1115
       |||| || |||||||||
seq2  TCAGGAACAATGTTGCTG  1111