BAC Information

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BAC

Clone NameB6Ng01-242N17
Chromosome17 (Build37)
Map Location 60,499,666 - 60,615,771
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043537, LOC100043542
Downstream geneLOC100043549, LOC433129, EG620725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242N17.bB6Ng01-242N17.g
ACCGA052391GA052392
length1,1821,081
definitionB6Ng01-242N17.b B6Ng01-242N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,499,666 - 60,500,639)(60,614,687 - 60,615,771)
sequence
gaattctgggaactctttcttgggaatgtataaaaaggtcagagccccaa
aagagtcagtcagctctccatgctgctgcttgttcccgtttttgcctttg
ctgttttatggattcctggttggagatatcctgatgacaaagattggact
tgccactaggaattcaatgacaccggtcagcaggaattagtctaaagagt
tcaatgctcccatcactctaaacttctttctaacctacctagtgttgggg
cattggaagggctcagggtgaaaaaggatgatagatataagaagccatta
atgtagccaaatctatggttaccatgacataccagagctttgcatgtata
aagtcataatggctgtcaaagcacaaacaagacctttgcaagctgaagtg
agtccaaatccctaaatggcaaggggagtcagtcatgaaattcatctcta
gctttagacctattgataattgttagctgctgagagagaaaaactcagat
tcttcaaaaatgacagtttttagtaaatgaaatccagtccagtagatggc
catatatccaggattgtttggacagcataaattggttttgatggaaagaa
aatatgaacacaaagttcagtgagtgaggaaggactattgagaatggatt
tggaaagagttggggagggaccatgaaaatgataaatggaagaaaacatt
gtgtgaaagaacaaatgcaagttaaaaaaaataattactacatactacca
cccgtaagaaggcagagactgagacaaagatattaaaattgagagtgcta
tatgtttataagataagtgtaccatactaaggaatcttagtatcttcagc
ttctcccacactccaacagtctaaccctccacaattttctcaactgtttc
tctcttagttttaatataatgaacatacattatcatattctggtctagga
atttggcataatctttaatatgttaagctcaatccagttttctatctgtc
tgtctatcatctatctatctatctatctatctatctatctatctatctat
ctatcatctatcgtcgtcgccaacctgctactactactgtcaatctatca
tctatttagtatagttaatttttagattacggtttccaggatcagacatt
gaaaagccctctctcatttttttaaagaaaaa

gaattcttcacatctcccttcatatgcttgccttaacagaacatcctttc
ttctgtgtctgcttcagtgaaaccttccatcatgagcctgccttagcttt
taacacctgtgtccactttaaggaaacattcctttacacacgtgccccag
cgaaacaccactcaaccaactttccaaagaactcttaagtttctacttca
atccaaacatctccaaattgtagaaacctattattggtttcaaatggctg
ttggttcctaactcaatttacacagctgatgttatagttcacatagtgca
cgtggaaaagatgggaaacatttttcaaaaacttaatattttgagtctga
aattttacttactaatttatcttacttactatttgcataattatgcaatt
atataaagtacccacagaagttttaattaacaataatgtatttaatttac
taaggatttattttgtatgttcatatggattgcatatgttttaattgatt
tttaaaaaaatactagtcacacttatttaccaaatttaagcatctaaaaa
tacaaaaatcatacatgaagacattttcatttctattcatgtaataacaa
acacctcttcctagttattgaaaccacaattgcgatatttaatctcacaa
gacagaaagttcgacagcttcacacagactgtaagtaataaaggtataaa
aatgtgcatagagtatataaataatgctgtttcacataatttggaatcat
ataaatatttgtttacaggaaaatattataaaagaagagtgcctccataa
tttcagctcttgagagcattactgagccccgtcctgcatatgtatgaact
tcacataaacagcttgtccgtagtttctgttgttttaaaattttatgctg
tcaagatatattgatgtacctggagacagatccctgtcagaacgtacaag
attatgcaatcaaatcattttaggcaaaagtgatgcccattcttattcta
acatggtctgtcctttttccccccaaggacttcaattttgcttgactcag
aaatcatacattatggagtgcattcatagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_60499666_60500639
seq2: B6Ng01-242N17.b_255_1224

seq1  TCACTCTAAACTTCTTTCTAACCTACCTAGTGTTGGGGCATTGGAAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTAAACTTCTTTCTAACCTACCTAGTGTTGGGGCATTGGAAGGGC  50

seq1  TCAGGGTGAAAAAGGATGATAGATATAAGAAGCCATTAATGTAGCCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGAAAAAGGATGATAGATATAAGAAGCCATTAATGTAGCCAAAT  100

seq1  CTATGGTTACCATGACATACCAGAGCTTTGCATGTATAAAGTCATAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTTACCATGACATACCAGAGCTTTGCATGTATAAAGTCATAATGG  150

seq1  CTGTCAAAGCACAAACAAGACCTTTGCAAGCTGAAGTGAGTCCAAATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAAGCACAAACAAGACCTTTGCAAGCTGAAGTGAGTCCAAATCCC  200

seq1  TAAATGGCAAGGGGAGTCAGTCATGAAATTCATCTCTAGCTTTAGACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGCAAGGGGAGTCAGTCATGAAATTCATCTCTAGCTTTAGACCTA  250

seq1  TTGATAATTGTTAGCTGCTGAGAGAGAAAAACTCAGATTCTTCAAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATTGTTAGCTGCTGAGAGAGAAAAACTCAGATTCTTCAAAAATG  300

seq1  ACAGTTTTTAGTAAATGAAATCCAGTCCAGTAGATGGCCATATATCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTTAGTAAATGAAATCCAGTCCAGTAGATGGCCATATATCCAGG  350

seq1  ATTGTTTGGACAGCATAAATTGGTTTTGATGGAAAGAAAATATGAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGGACAGCATAAATTGGTTTTGATGGAAAGAAAATATGAACACA  400

seq1  AAGTTCAGTGAGTGAGGAAGGACTATTGAGAATGGATTTGGAAAGAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGTGAGTGAGGAAGGACTATTGAGAATGGATTTGGAAAGAGTTG  450

seq1  GGGAGGGACCATGAAAATGATAAATGGAAGAAAACATTGTGTGAAAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGACCATGAAAATGATAAATGGAAGAAAACATTGTGTGAAAGAAC  500

seq1  AAATGCAAGTTAAAAAAAATAATTACTACATACTACCACCCGTAAGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAGTTAAAAAAAATAATTACTACATACTACCACCCGTAAGAAGG  550

seq1  CAGAGACTGAGACAAAGATATTAAAATTGAGAGTGCTATATGTTTATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTGAGACAAAGATATTAAAATTGAGAGTGCTATATGTTTATAAG  600

seq1  ATAAGTGTACCATACTAAGGAATCTTAGTATCTTCAGCTTCTCCCACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGTACCATACTAAGGAATCTTAGTATCTTCAGCTTCTCCCACACT  650

seq1  CCAACAGTCTAA-CCTCCACAATTTTCTCAACTGTTTCTCTCTTAGTTTT  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAACAGTCTAACCCTCCACAATTTTCTCAACTGTTTCTCTCTTAGTTTT  700

seq1  AATATAATGAACATACATTATCATATTCTGGTCTAGGAATTTGGCAT-AT  748
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATATAATGAACATACATTATCATATTCTGGTCTAGGAATTTGGCATAAT  750

seq1  CTTT-ATATGTT-AGCTCAATCCAGTTTTCTATCTGTCTGTCTATCATCT  796
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTTAATATGTTAAGCTCAATCCAGTTTTCTATCTGTCTGTCTATCATCT  800

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT  846
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC-ATCTAT  849

seq1  CTGTCTGTCTGTCTACCTGCCTACCTACCTACCTGTCAATCTATCATCTA  896
      | ||| ||| | | ||||| ||| ||| ||| ||||||||||||||||||
seq2  C-GTC-GTC-GCCAACCTG-CTA-CTA-CTA-CTGTCAATCTATCATCTA  892

seq1  TTTAGTTAATTAGTTAATTTTAGAATTAC-GTTTTCAAGATCAG-CAATG  944
      ||||||    |||||||||||   ||||| |||| || |||||| || ||
seq2  TTTAGT---ATAGTTAATTTTTAGATTACGGTTTCCAGGATCAGACATTG  939

seq1  AAAA-ACCTCTTCTATTTTTTTAAAAAAAAA  974
      ||||  |||||   ||||||||||| |||||
seq2  AAAAGCCCTCTCTCATTTTTTTAAAGAAAAA  970


seq1: chr17_60614687_60615771
seq2: B6Ng01-242N17.g_67_1147 (reverse)

seq1  AACTATGAAATTGCACTCCATTTATGTATGATTTTCTGAGTCAAGCAAAA  50
      |||||||||  ||||||||| | |||||||| ||||||||||||||||||
seq2  AACTATGAA--TGCACTCCA-TAATGTATGA-TTTCTGAGTCAAGCAAAA  46

seq1  TTGAGGTCCTTTGGGGGGAAAAAAGGACAGACCATGTTTAGATAAG-ATT  99
      |||| ||||||  ||||| |||||||||||||||||||   ||||| || 
seq2  TTGAAGTCCTT--GGGGGGAAAAAGGACAGACCATGTTAGAATAAGAATG  94

seq1  GGCATCACTTTTGCCTAAAATGATTTGATTGCATATTCTTGTACGTTCTG  149
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGCATCACTTTTGCCTAAAATGATTTGATTGCATAATCTTGTACGTTCTG  144

seq1  ACA-GGATCTGTCTCCAGGTACATCAATATATCTTGACAGCATAAAATTT  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGATCTGTCTCCAGGTACATCAATATATCTTGACAGCATAAAATTT  194

seq1  TAAAACAACAGAAACTACGGACAAGCTGTTTATGTGAAGTTCATACATAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAACAGAAACTACGGACAAGCTGTTTATGTGAAGTTCATACATAT  244

seq1  GCAGGACGGGGCTCAGTAATGCTCTCAAGAGCTGAAATTATGGAGGCACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACGGGGCTCAGTAATGCTCTCAAGAGCTGAAATTATGGAGGCACT  294

seq1  CTTCTTTTATAATATTTTCCTGTAAACAAATATTTATATGATTCCAAATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTATAATATTTTCCTGTAAACAAATATTTATATGATTCCAAATT  344

seq1  ATGTGAAACAGCATTATTTATATACTCTATGCACATTTTTATACCTTTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAACAGCATTATTTATATACTCTATGCACATTTTTATACCTTTAT  394

seq1  TACTTACAGTCTGTGTGAAGCTGTCGAACTTTCTGTCTTGTGAGATTAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACAGTCTGTGTGAAGCTGTCGAACTTTCTGTCTTGTGAGATTAAA  444

seq1  TATCGCAATTGTGGTTTCAATAACTAGGAAGAGGTGTTTGTTATTACATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGCAATTGTGGTTTCAATAACTAGGAAGAGGTGTTTGTTATTACATG  494

seq1  AATAGAAATGAAAATGTCTTCATGTATGATTTTTGTATTTTTAGATGCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATGAAAATGTCTTCATGTATGATTTTTGTATTTTTAGATGCTT  544

seq1  AAATTTGGTAAATAAGTGTGACTAGTATTTTTTTAAAAATCAATTAAAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGTAAATAAGTGTGACTAGTATTTTTTTAAAAATCAATTAAAAC  594

seq1  ATATGCAATCCATATGAACATACAAAATAAATCCTTAGTAAATTAAATAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAATCCATATGAACATACAAAATAAATCCTTAGTAAATTAAATAC  644

seq1  ATTATTGTTAATTAAAACTTCTGTGGGTACTTTATATAATTGCATAATTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTTAATTAAAACTTCTGTGGGTACTTTATATAATTGCATAATTA  694

seq1  TGCAAATAGTAAGTAAGATAAATTAGTAAGTAAAATTTCAGACTCAAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATAGTAAGTAAGATAAATTAGTAAGTAAAATTTCAGACTCAAAAT  744

seq1  ATTAAGTTTTTGAAAAATGTTTCCCATCTTTTCCACGTGCACTATGTGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTTTTGAAAAATGTTTCCCATCTTTTCCACGTGCACTATGTGAA  794

seq1  CTATAACATCAGCTGTGTAAATTGAGTTAGGAACCAACAGCCATTTGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACATCAGCTGTGTAAATTGAGTTAGGAACCAACAGCCATTTGAAA  844

seq1  CCAATAATAGGTTTCTACAATTTGGAGATGTTTGGATTGAAGTAGAAACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATAGGTTTCTACAATTTGGAGATGTTTGGATTGAAGTAGAAACT  894

seq1  TAAGAGTTCTTTGGAAAGTTGGTTGAGTGGTGTTTCGCTGGGGCACGTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTCTTTGGAAAGTTGGTTGAGTGGTGTTTCGCTGGGGCACGTGT  944

seq1  GTAAAGGAATGTTTCCTTAAAGTGGACACAGGTGTTAAAAGCTAAGGCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGAATGTTTCCTTAAAGTGGACACAGGTGTTAAAAGCTAAGGCAG  994

seq1  GCTCATGATGGAAGGTTTCACTGAAGCAGACACAGAAGAAAGGATGTTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGATGGAAGGTTTCACTGAAGCAGACACAGAAGAAAGGATGTTCT  1044

seq1  GTTAAGGCAAGCATATGAAGGGAGATGTGAAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGCAAGCATATGAAGGGAGATGTGAAGAATTC  1081


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