BAC Information

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BAC

Clone NameB6Ng01-243O21
Chromosome17 (Build37)
Map Location 24,227,573 - 24,357,108
singlet/doubletdoublet
Overlap genePdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik
Upstream geneLOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5
Downstream geneCcnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243O21.bB6Ng01-243O21.g
ACCGA053188GA053189
length1,100773
definitionB6Ng01-243O21.b B6Ng01-243O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,227,573 - 24,228,677)(24,356,336 - 24,357,108)
sequence
gaattctatgcatggcaactggttaaaacaagccaagaaaacagaaatca
aatgaggaaaactgatttgaatcaataaactattaaaaaaatatataaag
gtcataatgaaagaagagtctgggcaagtaaaactgaaaccatggaagca
cgctgtggtttcttttatctgtttttttttgctggtatttcccagttatc
aagagaggaagttttaaaaacaaagtatatttaagatcttgtgtctgttt
tcaagacaagctgctttgaagccagtgacagcaactgcccacaaacccag
gtggtacccctggaaacagagtaggcacctactgctaagcatcaagctac
agggatcttcccacatcacattcctggaaactaaatcaatagcattctgg
gatctcttggtaaaatgaaaaagcattccagagcatttttaaaaaataat
cagaaaatctccgagccacaaactagcaacgctgagctttccagaagacc
cagtgtcaggcagtgagggttatagcagggcactactttctcatctacag
gtccagaccacatcctgcctcccatctatcccccaaacaggtaaaagctc
atccgctgaggaataagaacaggaatcagcctacacaaggtatgctgggc
atttacttattacagcaaagcagtcaaccatcaccaggtccacaacaatc
actcacacatttcaaccagtaataacacaaattagggtcccaaggagtca
tattcacatagcatggcaagcagaatttcttttgcctgggctacacccca
tgtctgccagcttacgttgccatagcagtcttcatcatcctctgacatgg
ctggtaggtaagctgtgagcttcggaggtgtctgctggtgcaaattctcc
caagtgatggtctcaaagaatggatgagctttgagaggcccgtacccttc
catctcttcacagcctaaacgctttgtggcatctaaaaccttaatgatag
ccaagacatgtcaaggcaaggttgaaatgtaatactgtttgtttattttt
gttgaagtgttttcagccctgaaactactggaaagcttggggacactgtg

gaattcttgcatggttcttgacgttcatagcatgtgcaccgagttctcaa
gatctcgaggagctggaacttttgacccaggctctggagaaggctgtacg
tgtgaggaaaggcgtgtccaatgctggacaaagagacagaacccccactc
tgacatctaaggcagccacttctggtgccgctgccgcctcccatcctcgg
gctcccagccggggtggcagccgtgtattgggtacaagatccaccaaggg
tatacagcgggccacagcccctcccaaggattaccctgagcacagactac
gatcaaagggtgataagacccatgtaagaacacaagaccaaactactggg
tatggaccagacctcagggaccaacaaatgaccccgtcatctgctcatca
caccacagaactcttcgcattaaaggagaaggggtaagcttcccagacgc
tcgtatcctgacagggcattgagctggttgaggaagcccctggtgccgac
ccgtaagggtcatgcactgaagcaaacagggcagaacagggttgggatgg
tatcaggtttgtcgttctggagcctaaccagcccatgagctctctggact
gggcgagcacccaccctcctccagaagccgttttcaaaaagcttgtcaga
attaagctgttaaaggagaggaggtgagaaggttcgccccaatgggttct
gagccatgagtaagaatgacagtcctaatgccgggcttggtggcccacgc
ctttaatcccagcactcgggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24227573_24228677
seq2: B6Ng01-243O21.b_46_1145

seq1  GAATTCTATGCATGGCAACTGGTTAAAACAAGCCAAGAAAACAGAAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCATGGCAACTGGTTAAAACAAGCCAAGAAAACAGAAATCA  50

seq1  AATGAGGAAAACTGATTTGAATCAATAAACTATTAAAAAAATATATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAAAACTGATTTGAATCAATAAACTATTAAAAAAATATATAAAG  100

seq1  GTCATAATGAAAGAAGAGTCTGGGCAAGTAAAACTGAAACCATGGAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATGAAAGAAGAGTCTGGGCAAGTAAAACTGAAACCATGGAAGCA  150

seq1  CGCTGTGGTTTCTTTTATCTGTTTTTTTTTGCTGGTATTTCCCAGTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTGGTTTCTTTTATCTGTTTTTTTTTGCTGGTATTTCCCAGTTATC  200

seq1  AAGAGAGGAAGTTTTAAAAACAAAGTATATTTAAGATCTTGTGTCTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGAAGTTTTAAAAACAAAGTATATTTAAGATCTTGTGTCTGTTT  250

seq1  TCAAGACAAGCTGCTTTGAAGCCAGTGACAGCAACTGCCCACAAACCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACAAGCTGCTTTGAAGCCAGTGACAGCAACTGCCCACAAACCCAG  300

seq1  GTGGTACCCCTGGAAACAGAGTAGGCACCTACTGCTAAGCATCAAGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACCCCTGGAAACAGAGTAGGCACCTACTGCTAAGCATCAAGCTAC  350

seq1  AGGGATCTTCCCACATCACATTCCTGGAAACTAAATCAATAGCATTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTTCCCACATCACATTCCTGGAAACTAAATCAATAGCATTCTGG  400

seq1  GATCTCTTGGTAAAATGAAAAAGCATTCCAGAGCATTTTTAAAAAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTTGGTAAAATGAAAAAGCATTCCAGAGCATTTTTAAAAAATAAT  450

seq1  CAGAAAATCTCCGAGCCACAAACTAGCAACGCTGAGCTTTCCAGAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCTCCGAGCCACAAACTAGCAACGCTGAGCTTTCCAGAAGACC  500

seq1  CAGTGTCAGGCAGTGAGGGTTATAGCAGGGCACTACTTTCTCATCTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCAGGCAGTGAGGGTTATAGCAGGGCACTACTTTCTCATCTACAG  550

seq1  GTCCAGACCACATCCTGCCTCCCATCTATCCCCCAAACAGGTAAAAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGACCACATCCTGCCTCCCATCTATCCCCCAAACAGGTAAAAGCTC  600

seq1  ATCCGCTGAGGAATAAGAACAGGAATCAGCCTACACAAGGTATGCTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCTGAGGAATAAGAACAGGAATCAGCCTACACAAGGTATGCTGGGC  650

seq1  ATTTACTTATTACAGCAAAGCAGTCAACCATCACCAGGTCCACAACAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTATTACAGCAAAGCAGTCAACCATCACCAGGTCCACAACAATC  700

seq1  ACTCACACATTTCAACCAGTAATAACACAAATTAGGGTCCCAAGGAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACATTTCAACCAGTAATAACACAAATTAGGGTCCCAAGGAGTCA  750

seq1  TATTCACATAGCATGGCAAGCAGAATTTCTTTTGCCTGGGCTACACCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACATAGCATGGCAAGCAGAATTTCTTTTGCCTGGGCTACACCCCA  800

seq1  TGTCTGCCAGCTTACGTTGCCATAGCAGTCTTCATCATCCTCTGACATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCAGCTTACGTTGCCATAGCAGTCTTCATCATCCTCTGACATGG  850

seq1  CTGGTAGGTAAGCTGTGAGCTTCGGAGGTGTCTGCTGGTGCAAATTCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGGTAAGCTGTGAGCTTCGGAGGTGTCTGCTGGTGCAAATTCTCC  900

seq1  CAAGTGATGGTCTCAAAGAATGGATGAGCTTTGAGAGGCCCGTACCCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGATGGTCTCAAAGAATGGATGAGCTTTGAGAGGCCCGTACCCTTC  950

seq1  CATCTCTTCACAGCCTAAACGCTTTGTGGCATCTAAAACCTTAAATGATA  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATCTCTTCACAGCCTAAACGCTTTGTGGCATCTAAAACCTT-AATGATA  999

seq1  GCCAAGACATGTCAAGGCAAGGGTTGAAATGTAATTACTTGTTTGTTTA-  1049
      |||||||||||||||||||| ||||||||||||| ||| |||||||||| 
seq2  GCCAAGACATGTCAAGGCAA-GGTTGAAATGTAA-TAC-TGTTTGTTTAT  1046

seq1  TTTTGTGGAAGTGTTTTCAAGCCCTGAAACCTACTGGAAAGGCTTGGGAC  1099
      |||||| ||||||||||| |||||||||| |||||||||||  | |||||
seq2  TTTTGTTGAAGTGTTTTC-AGCCCTGAAA-CTACTGGAAAGCTTGGGGAC  1094

seq1  ACTGTG  1105
      ||||||
seq2  ACTGTG  1100

seq1: chr17_24356336_24357108
seq2: B6Ng01-243O21.g_69_841 (reverse)

seq1  CCTCCCGAGTGCTGGGATTAAAGGCGTGGGCCACCAAGCCCGGCATTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGAGTGCTGGGATTAAAGGCGTGGGCCACCAAGCCCGGCATTAGG  50

seq1  ACTGTCATTCTTACTCATGGCTCAGAACCCATTGGGGCGAACCTTCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATTCTTACTCATGGCTCAGAACCCATTGGGGCGAACCTTCTCAC  100

seq1  CTCCTCTCCTTTAACAGCTTAATTCTGACAAGCTTTTTGAAAACGGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCCTTTAACAGCTTAATTCTGACAAGCTTTTTGAAAACGGCTTC  150

seq1  TGGAGGAGGGTGGGTGCTCGCCCAGTCCAGAGAGCTCATGGGCTGGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGGTGGGTGCTCGCCCAGTCCAGAGAGCTCATGGGCTGGTTAG  200

seq1  GCTCCAGAACGACAAACCTGATACCATCCCAACCCTGTTCTGCCCTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAACGACAAACCTGATACCATCCCAACCCTGTTCTGCCCTGTTT  250

seq1  GCTTCAGTGCATGACCCTTACGGGTCGGCACCAGGGGCTTCCTCAACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTGCATGACCCTTACGGGTCGGCACCAGGGGCTTCCTCAACCAG  300

seq1  CTCAATGCCCTGTCAGGATACGAGCGTCTGGGAAGCTTACCCCTTCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGCCCTGTCAGGATACGAGCGTCTGGGAAGCTTACCCCTTCTCCT  350

seq1  TTAATGCGAAGAGTTCTGTGGTGTGATGAGCAGATGACGGGGTCATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCGAAGAGTTCTGTGGTGTGATGAGCAGATGACGGGGTCATTTGT  400

seq1  TGGTCCCTGAGGTCTGGTCCATACCCAGTAGTTTGGTCTTGTGTTCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCTGAGGTCTGGTCCATACCCAGTAGTTTGGTCTTGTGTTCTTAC  450

seq1  ATGGGTCTTATCACCCTTTGATCGTAGTCTGTGCTCAGGGTAATCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCTTATCACCCTTTGATCGTAGTCTGTGCTCAGGGTAATCCTTGG  500

seq1  GAGGGGCTGTGGCCCGCTGTATACCCTTGGTGGATCTTGTACCCAATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCTGTGGCCCGCTGTATACCCTTGGTGGATCTTGTACCCAATACA  550

seq1  CGGCTGCCACCCCGGCTGGGAGCCCGAGGATGGGAGGCGGCAGCGGCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGCCACCCCGGCTGGGAGCCCGAGGATGGGAGGCGGCAGCGGCACC  600

seq1  AGAAGTGGCTGCCTTAGATGTCAGAGTGGGGGTTCTGTCTCTTTGTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGCTGCCTTAGATGTCAGAGTGGGGGTTCTGTCTCTTTGTCCAG  650

seq1  CATTGGACACGCCTTTCCTCACACGTACAGCCTTCTCCAGAGCCTGGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGACACGCCTTTCCTCACACGTACAGCCTTCTCCAGAGCCTGGGTC  700

seq1  AAAAGTTCCAGCTCCTCGAGATCTTGAGAACTCGGTGCACATGCTATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCCAGCTCCTCGAGATCTTGAGAACTCGGTGCACATGCTATGAA  750

seq1  CGTCAAGAACCATGCAAGAATTC  773
      |||||||||||||||||||||||
seq2  CGTCAAGAACCATGCAAGAATTC  773