BAC Information

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BAC

Clone NameB6Ng01-244G14
Chromosome17 (Build37)
Map Location 26,984,684 - 27,132,401
singlet/doubletdoublet
Overlap geneKifc1, Phf1, Cuta, Syngap1, Zbtb9
Upstream geneWdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5
Downstream geneBak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244G14.bB6Ng01-244G14.g
ACCGA053553GA053554
length1,0891,109
definitionB6Ng01-244G14.b B6Ng01-244G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,984,684 - 26,985,803)(27,131,286 - 27,132,401)
sequence
gaattctgggggcaaaggttaaaattgtagctttgtatgcctttcctctc
attttggaattttaaaaatcaaagtttgtgacagagagcccaagtggcag
gcaagtaaactcaccacaccacggtgggtcagaaaagatcccagcctctc
tccagcaacattgccctctggcttttctctgaagtggttcttggtctcag
agcacccacctgaaggcatactggaacaggctcacgggagacagctccca
cacctctcaaagcaccaagggggagtgggagaaggaggctggccaaaagg
tgttgttaaagacccccccccccccgtactggctcagatgggggaggaga
tcagcagcctagcctagcttccttccctgcacgagtggggagctctaagc
gcctttctaatgaacccccactagatctagagtcttactaaccagattga
ggtgactctttcctatcttggggtacaggaatttgtacaaatatttccta
catggttcacttatatacactggaaactttcgtgatcctagaatctttca
cttctcacggggctaccttggacctcttgacctcatagggacaccacttt
cagattccactttctcacaaggaaaggtttccaggtagaagtgtgccaac
ccagccttccccagaatgaccaggtcagtccctctttgcctagagcggga
agtgagctgcagcttgcaggagccagagggacgcattcccaagccttcca
gagctcagtccaatttgccctaggctactggaggaaatatgcacgccaca
cctaaccaccagaaaacgtctgggtcctcctttctcctcagagttaaata
tattaaaacaaacaaacaacacacaacaacaaacaaacaaaaacagagtt
gaatgttaacagtattccctttgcaaagaactttgtgaacttgatcaagc
cagactgcttcctgtccctgctgagagctgtgatttgctttctagcatag
aataagcagttgacatgactactttattcaaaatagatccacatcacaaa
caacaccatgtgaggagatttatacagcagtctagcctc
gaattcctgacaccattcttccaagactgtatgagaagcagttctctcat
cccggacactgcgttgagctgagtagagaggtggcagattggaagaggtt
ttgaaccctgagggcatccccagcttctcagaggaaacacatataggagc
ataggagcgccctggggtcctttgaaggcgttgaccctaaggaagtgcca
atatcagtgggtgtggccttgtttggaggaagtgcgtcagtgtggggggc
aggctttgagatctatgctcaggctctgcccagtgtggaagagacccccc
ctcctggctgtctttggatcaagatctagtactctcagctccttctccag
taccacgtctgcctggatgctgccatgctcctgccttgatgataatggac
tgaacctctgaacctgtaagccagctccaattacatgttgcccattctaa
gagtcgccttggtcatggtgtctgttcacagcaatgaaaccctaactaag
acgcatccaccgcacactacagctcacactcgactttggagactccaccc
tccttgtttcctctccctacccggaagtgggaaacttctggtttctttgg
aaagtcaagtcatgtcaaatgatattttccccacagacagtgggagagag
cactggcttgctctgctctgcctcgttattcttcatgaagtacactcgtg
gactggttcaccttacattgcgcgagttgctgagctctgattgtggtgac
gcctcagagagaagctcgccaaagaacttctcgagaggccctgcgacctc
ttgcagctcacttggatcctggccagttggcgaaccttgcagcttcctgc
agactgactgccctggctggtgagtggtgtccgccgagaggactggactg
ctgatatcctgacaaagaagcttgagcttgtccctgagactattgctaaa
caggacagtccactccccctgcatcctgaacaactttttctcttccactg
cgtctgttcgtggtgggcccagaggagagctgtacgctactacgtagtga
gcaaatatattgccccacactacccttaggcttatcaaggtgagaagagt
attgactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26984684_26985803
seq2: B6Ng01-244G14.b_47_1135

seq1  GAATTCTGGGGGCAAAGGTTAAAATTGTAGCTTTGTATGCCTTTCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGGCAAAGGTTAAAATTGTAGCTTTGTATGCCTTTCCTCTC  50

seq1  ATTTTGGAATTTTAAAAATCAAAGTTTGTGACAGAGAGCCCAAGTGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGAATTTTAAAAATCAAAGTTTGTGACAGAGAGCCCAAGTGGCAG  100

seq1  GCAAGTAAACTCACCACACCACGGTGGGTCAGAAAAGATCCCAGCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAAACTCACCACACCACGGTGGGTCAGAAAAGATCCCAGCCTCTC  150

seq1  TCCAGCAACATTGCCCTCTGGCTTTTCTCTGAAGTGGTTCTTGGTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAACATTGCCCTCTGGCTTTTCTCTGAAGTGGTTCTTGGTCTCAG  200

seq1  AGCACCCACCTGAAGGCATACTGGAACAGGCTCACGGGAGACAGCTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCACCTGAAGGCATACTGGAACAGGCTCACGGGAGACAGCTCCCA  250

seq1  CACCTCTCAAAGCACCAAGGGGGAGTGGGAGAAGGAGGCTGGCCAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTCAAAGCACCAAGGGGGAGTGGGAGAAGGAGGCTGGCCAAAAGG  300

seq1  TGTTGTTAAAGACCCCCCCCCCCCCGTACTGGCTCAGATGGGGGAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTAAAGACCCCCCCCCCCCCGTACTGGCTCAGATGGGGGAGGAGA  350

seq1  TCAGCAGCCTAGCCTAGCTTCCTTCCCTGCACGAGTGGGGAGCTCTAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCCTAGCCTAGCTTCCTTCCCTGCACGAGTGGGGAGCTCTAAGC  400

seq1  GCCTTTCTAATGAACCCCCACTAGATCTAGAGTCTTACTAACCAGATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTAATGAACCCCCACTAGATCTAGAGTCTTACTAACCAGATTGA  450

seq1  GGTGACTCTTTCCTATCTTGGGGTACAGGAATTTGTACAAATATTTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTCTTTCCTATCTTGGGGTACAGGAATTTGTACAAATATTTCCTA  500

seq1  CATGGTTCACTTATATACACTGGAAACTTTCGTGATCCTAGAATCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTCACTTATATACACTGGAAACTTTCGTGATCCTAGAATCTTTCA  550

seq1  CTTCTCACGGGGCTACCTTGGACCTCTTGACCTCATAGGGACACCACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACGGGGCTACCTTGGACCTCTTGACCTCATAGGGACACCACTTT  600

seq1  CAGATTCCACTTTCTCACAAGGAAAGGTTTCCAGGTAGAAGTGTGCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCCACTTTCTCACAAGGAAAGGTTTCCAGGTAGAAGTGTGCCAAC  650

seq1  CCAGCCTTCCCCAGAATGACCAGGTCAGTCCCTCTTTGCCTAGAGCGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTCCCCAGAATGACCAGGTCAGTCCCTCTTTGCCTAGAGCGGGA  700

seq1  AGTGAGCTGCAGCTTGCAGGAGCCAGAGGGACGCATTCCCAAGCCTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTGCAGCTTGCAGGAGCCAGAGGGACGCATTCCCAAGCCTTCCA  750

seq1  GAGCTCAGTCCAA-TTGCCCTAGGCTACTGGAGGAAATATGCACGCCACA  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGTCCAATTTGCCCTAGGCTACTGGAGGAAATATGCACGCCACA  800

seq1  CCTAACCACCAGAAAACGTCTGGGTCCTCCTTTCTCCTCAGAGTTAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCACCAGAAAACGTCTGGGTCCTCCTTTCTCCTCAGAGTTAAATA  850

seq1  TATTAAAAACAAAACAAAACAAACACACAAACAAACAAACAAACAAAAAA  899
      ||||||||   |||||||   |||||||||   ||||||||||| |||||
seq2  TATTAAAA--CAAACAAA--CAACACACAA--CAACAAACAAAC-AAAAA  893

seq1  CAGAGTTGAATGTTAACAGTATTCCCCTTTGCAAAGAACTTTGTGAACTT  949
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGAGTTGAATGTTAACAGTATT-CCCTTTGCAAAGAACTTTGTGAACTT  942

seq1  GATCAAGCCAGACTGCTTCCTGTCCCTGCTGAGAAGCTGTGATTGGTTTC  999
      ||||||||||||||||||||||||||||||||| |||||||||| | || 
seq2  GATCAAGCCAGACTGCTTCCTGTCCCTGCTGAG-AGCTGTGATTTGCTTT  991

seq1  CTTAGCAATAGATAAAGCAGTTGGAACAATGACTACTTTTATTTAAAAAA  1049
      | |||| |||||  |||||||||  || |||||||| ||||||   ||||
seq2  C-TAGC-ATAGAATAAGCAGTTG--AC-ATGACTAC-TTTATT--CAAAA  1033

seq1  TAGATTCCACATCACAAAACCAAACAACA-AATGTGGAAAGGGGAGATTT  1098
      |||| |||||||||      |||||||||  ||||     | ||||||||
seq2  TAGA-TCCACATCA------CAAACAACACCATGT-----GAGGAGATTT  1071

seq1  ATACAGCAAGTCCCTTAGCCTC  1120
      ||||||| ||||   |||||||
seq2  ATACAGC-AGTC---TAGCCTC  1089

seq1: chr17_27131286_27132401
seq2: B6Ng01-244G14.g_67_1175 (reverse)

seq1  GGAGTCAATACTCTTCTTCCACTGTGGTTTAGCCT-AGGGTAGTGTGGGC  49
      |||||||||||||||||  |||  | | | ||||| ||||||||||||| 
seq2  GGAGTCAATACTCTTCT--CAC-CTTGATAAGCCTAAGGGTAGTGTGGGG  47

seq1  ATATAT-TTTGCTCAACCTACGTTAGTAAGCGTACAGCCTCTCCTCT-GG  97
        |||| ||||||||  ||||| |||| ||||||||| ||||||||| ||
seq2  CAATATATTTGCTCA--CTACG-TAGT-AGCGTACAG-CTCTCCTCTGGG  92

seq1  CCCACCACCGACCAGACGCAGTGGAAGAG-AAAAGTTG-TCAGGATGCAG  145
      ||||||| ||| ||||||||||||||||| |||||||| |||||||||||
seq2  CCCACCA-CGAACAGACGCAGTGGAAGAGAAAAAGTTGTTCAGGATGCAG  141

seq1  GGGGAGTGGACTGTCCTGTTTAGCAATAGTTCTTCAGGGACAAGCTCAAG  195
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  GGGGAGTGGACTGTCCTGTTTAGCAATAGT--CTCAGGGACAAGCTCAAG  189

seq1  CTTCTTTGTCAGGATATCAGCAGTCCAGTCCTCTCGGCGGACACCACTCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGTCAGGATATCAGCAGTCCAGTCCTCTCGGCGGACACCACTCA  239

seq1  CCAGCCAGGGCAGTTCAGTCTGCAGGAAGCTGCAAGGTTCGCCAACTGGC  295
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGGGCAG-TCAGTCTGCAGGAAGCTGCAAGGTTCGCCAACTGGC  288

seq1  CAGGATCCAAGTGAGCTGCAAGAGGTCGCAGGGCCTCTCGAGAAGTTCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCCAAGTGAGCTGCAAGAGGTCGCAGGGCCTCTCGAGAAGTTCTT  338

seq1  TGGCGAGCTTCTCTCTGAGGCGTCACCACAATCAGAGCTCAGCAACTCGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGAGCTTCTCTCTGAGGCGTCACCACAATCAGAGCTCAGCAACTCGC  388

seq1  GCAATGTAAGGTGAACCAGTCCACGAGTGTACTTCATGAAGAATAACGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTAAGGTGAACCAGTCCACGAGTGTACTTCATGAAGAATAACGAG  438

seq1  GCAGAGCAGAGCAAGCCAGTGCTCTCTCCCACTGTCTGTGGGGAAAATAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGAGCAAGCCAGTGCTCTCTCCCACTGTCTGTGGGGAAAATAT  488

seq1  CATTTGACATGACTTGACTTTCCAAAGAAACCAGAAGTTTCCCACTTCCG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGACATGACTTGACTTTCCAAAGAAACCAGAAGTTTCCCACTTCCG  538

seq1  GGTAGGGAGAGGAAACAAGGAGGGTGGAGTCTCCAAAGTCGAGTGTGAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGAGAGGAAACAAGGAGGGTGGAGTCTCCAAAGTCGAGTGTGAGC  588

seq1  TGTAGTGTGCGGTGGATGCGTCTTAGTTAGGGTTTCATTGCTGTGAACAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTGCGGTGGATGCGTCTTAGTTAGGGTTTCATTGCTGTGAACAG  638

seq1  ACACCATGACCAAGGCGACTCTTAGAATGGGCAACATGTAATTGGAGCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGACCAAGGCGACTCTTAGAATGGGCAACATGTAATTGGAGCTG  688

seq1  GCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAGCATGGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAGCATGGC  738

seq1  AGCATCCAGGCAGACGTGGTACTGGAGAAGGAGCTGAGAGTACTAGATCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCAGGCAGACGTGGTACTGGAGAAGGAGCTGAGAGTACTAGATCT  788

seq1  TGATCCAAAGACAGCCAGGAGGGGGGGTCTCTTCCACACTGGGCAGAGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAAAGACAGCCAGGAGGGGGGGTCTCTTCCACACTGGGCAGAGCC  838

seq1  TGAGCATAGATCTCAAAGCCTGCCCCCCACACTGACGCACTTCCTCCAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATAGATCTCAAAGCCTGCCCCCCACACTGACGCACTTCCTCCAAA  888

seq1  CAAGGCCACACCCACTGATATTGGCACTTCCTTAGGGTCAACGCCTTCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCACACCCACTGATATTGGCACTTCCTTAGGGTCAACGCCTTCAA  938

seq1  AGGACCCCAGGGCGCTCCTATGCTCCTATATGTGTTTCCTCTGAGAAGCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCCAGGGCGCTCCTATGCTCCTATATGTGTTTCCTCTGAGAAGCT  988

seq1  GGGGATGCCCTCAGGGTTCAAAACCTCTTCCAATCTGCCACCTCTCTACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGCCCTCAGGGTTCAAAACCTCTTCCAATCTGCCACCTCTCTACT  1038

seq1  CAGCTCAACGCAGTGTCCGGGATGAGAGAACTGCTTCTCATACAGTCTTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAACGCAGTGTCCGGGATGAGAGAACTGCTTCTCATACAGTCTTG  1088

seq1  GAAGAATGGTGTCAGGAATTC  1116
      |||||||||||||||||||||
seq2  GAAGAATGGTGTCAGGAATTC  1109