BAC Information

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BAC

Clone NameB6Ng01-244P15
Chromosome17 (Build37)
Map Location 55,362,492 - 55,363,447
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833
Downstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244P15.bB6Ng01-244P15.g
ACCGA053981GA053982
length1,178961
definitionB6Ng01-244P15.b B6Ng01-244P15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagcgctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatatatatatat
atatatattgtcccctatctgatttaggataggtaaagatcctttcccca
tctgttggtggcctttttgtcttattggctgtgtcttttgctttacagaa
gctttgcaattttatgaggtcccatttgtcgattcttgatcttacagcac
aagccattgctgttctgttcaggattttttgccctgtgcccatatcttca
aggattttccccactttctcctctataagtttcactgtctctggttttat
gtggagttccttgatccacttagatttgaccttagtacaaggagatagga
atggatcaatttgctttttcctacatgataactgccagttgtgccagcac
catttgttgaaaatgctgtcttttttccactggatggttttagctccctt
gtcaaagatcaagtgaccataggtgtgtgggctcatttatgggtcttcaa
ttttattctattggtctacttgtatgtcgctataccagtaccatgaagtt
tttatcacaattgctctgtagtacagctttaggtcaggcaaggtgtttcc
accagaggttcttttatccacctaggttttttattattccagatgaattt
acagagtgccctttctacttcgttgaagaattgagttgggattttgatgg
ggattgcattgattctgtagattgcttttggcaagatagccatttttact
atattgatcctgccagtccatgagcatgggagatttttccatcttctgag
atctttttttaattctttcttcagagattttaagttcttatcatacagat
ctttcaccttccttacttatatcacacaaaggtatttttattattatttt
gtgactattgagaaggtgctgtttcccttatttctttctcaagcctgttt
atctttgggtagagaagccatgacttgtttggaataattttattttattc
aggtctactgcattgaagctgtttatcaaggttaggattcctctggactt
tagggtccactttattacattcatcactcgcgaatgtactgatcctgtcc
aatttattcctggatgctttgagtgtga
gaattcactgttcctgctcaacatggtcaacagttgaccatctgtgtact
ggagatgctatctgcagagatctaaggaccacagggagtgttctagaggt
gcaagcagggagggggaagtgcaatggcctctgctgctctggtgtcactg
ctgctccgagacactgaactgtgcacagccaagctgtgggggttggtgta
ggggaactcacaagcaatgtgtaggggtgcttctagtagtgaatgtttca
ggagagagttttcttccccaggaagtgttactgctcttatacaaacaaat
gctctagggggattgagtaattctcacacacatttatgccttctggatag
gatcttatatacatttttgggatgggttgaggtctgacagcagatgcttg
ctattggcttggtctgagagattaggaatgcctcatatgcatatggaagg
gatttgagggagcagcccctacttgaatatagtcacaaaccacttcgggg
gttgggggactgtagtcacctgacagccctcctaccacttctccatagaa
gtaggtaacatcccttttaggttctggggcctccaaccttgttcaacctt
accaggtttcctggtatggtttactgacccatagactttttgtgctctgt
gcctttaagaacattcttgtgggttttagtttgttatgaattcaggtaat
ctttctcactatgaaaatttttcttctgactctctatccttcatacagag
tgagctgagtattccaatggatcataaagggtaacatgttggagctataa
tgggcaagcctttcttctgagccacaccctcttcatcttcccaaatgttt
atgttatatacttaaggacgtattactaaagatctacttggtactttcct
tgagaatgggttcacaactgctatgagaccgaaacatcttgtggccaaaa
aaatctagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55362492_55363447
seq2: B6Ng01-244P15.g_71_1031

seq1  GAATTCACTGTTCCTGCTCAACATGGTCAACAGTTGACCATCTGTGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTCCTGCTCAACATGGTCAACAGTTGACCATCTGTGTACT  50

seq1  GGAGATGCTATCTGCAGAGATCTAAGGACCACAGGGAGTGTTCTAGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCTATCTGCAGAGATCTAAGGACCACAGGGAGTGTTCTAGAGGT  100

seq1  GCAAGCAGGGAGGGGGAAGTGCAATGGCCTCTGCTGCTCTGGTGTCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGGGAGGGGGAAGTGCAATGGCCTCTGCTGCTCTGGTGTCACTG  150

seq1  CTGCTCCGAGACACTGAACTGTGCACAGCCAAGCTGTGGGGGTTGGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCGAGACACTGAACTGTGCACAGCCAAGCTGTGGGGGTTGGTGTA  200

seq1  GGGGAACTCACAAGCAATGTGTAGGGGTGCTTCTAGTAGTGAATGTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACTCACAAGCAATGTGTAGGGGTGCTTCTAGTAGTGAATGTTTCA  250

seq1  GGAGAGAGTTTTCTTCCCCAGGAAGTGTTACTGCTCTTATACAAACAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGTTTTCTTCCCCAGGAAGTGTTACTGCTCTTATACAAACAAAT  300

seq1  GCTCTAGGGGGATTGAGTAATTCTCACACACATTTATGCCTTCTGGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGGGGGATTGAGTAATTCTCACACACATTTATGCCTTCTGGATAG  350

seq1  GATCTTATATACATTTTTGGGATGGGTTGAGGTCTGACAGCAGATGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTATATACATTTTTGGGATGGGTTGAGGTCTGACAGCAGATGCTTG  400

seq1  CTATTGGCTTGGTCTGAGAGATTAGGAATGCCTCATATGCATATGGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGCTTGGTCTGAGAGATTAGGAATGCCTCATATGCATATGGAAGG  450

seq1  GATTTGAGGGAGCAGCCCCTACTTGAATATAGTCACAAACCACTTCGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGGGAGCAGCCCCTACTTGAATATAGTCACAAACCACTTCGGGG  500

seq1  GTTGGGGGACTGTAGTCACCTGACAGCCCTCCTACCACTTCTCCATAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGGACTGTAGTCACCTGACAGCCCTCCTACCACTTCTCCATAGAA  550

seq1  GTAGGTAACATCCCTTTTAGGTTCTGGGGCCTCCAACCTTGTTCAACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAACATCCCTTTTAGGTTCTGGGGCCTCCAACCTTGTTCAACCTT  600

seq1  ACCAGGTTTCCTGGTATGGTTTACTGACCCATAGACTTTTTGTGCTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTTCCTGGTATGGTTTACTGACCCATAGACTTTTTGTGCTCTGT  650

seq1  GCCTTTAAGAACATTCTTGTGGGTTTTAG-TTGTTATGAATTCAGGTAAT  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCCTTTAAGAACATTCTTGTGGGTTTTAGTTTGTTATGAATTCAGGTAAT  700

seq1  C-TTCTCACTATGAAAATTTTTCTTCTGACTCTCTATCC-TCATACAGAG  747
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTCTCACTATGAAAATTTTTCTTCTGACTCTCTATCCTTCATACAGAG  750

seq1  TGAGCTGAGTATTCCAATGGATCATAAAGGGTAACATGGTGGAGCTATAA  797
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGAGCTGAGTATTCCAATGGATCATAAAGGGTAACATGTTGGAGCTATAA  800

seq1  TGGGCAAGCCTTTCTTCTGAG-CACA-CCTC-TCATCTCCCAAAATGTTA  844
      ||||||||||||||||||||| |||| |||| |||||| || ||||||| 
seq2  TGGGCAAGCCTTTCTTCTGAGCCACACCCTCTTCATCTTCCCAAATGTTT  850

seq1  ATGTTATATAC-TAAGGACGTATTACTAAGAGTCTACTTGTAACATGTCC  893
      ||||||||||| |||||||||||||||||   ||||||||  || | |||
seq2  ATGTTATATACTTAAGGACGTATTACTAAAGATCTACTTGGTAC-TTTCC  899

seq1  TTGAGAATGGGTTCAGAACTGCCAATGAGAGCGAAACAATCTTGTGGCCA  943
      ||||||||||||||| ||||| | |||||| |||||| ||||||||||||
seq2  TTGAGAATGGGTTCACAACTG-CTATGAGACCGAAAC-ATCTTGTGGCCA  947

seq1  AACAAATCT-GAAT  956
      || |||||| ||||
seq2  AAAAAATCTAGAAT  961