BAC Information

Click to search

BAC

Clone NameB6Ng01-245G16
Chromosome17 (Build37)17 (Build37)
Map Location 6,634,951 - 6,635,8336,449,304 - 6,450,464
singlet/doubletsingletsinglet
Overlap geneLOC100040525
Upstream geneZdhhc14, 3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531
Downstream geneLOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2, LOC100040654, Rshl2b, 1700122H20Rik, Tagap1, Rnaset2b, Gm1604, Rps6ka2, LOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245G16.bB6Ng01-245G16.g
ACCGA054307GA054308
length1,0341,144
definitionB6Ng01-245G16.b B6Ng01-245G16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,634,951 - 6,635,833)(6,449,304 - 6,450,464)
sequence
gaattcagtactgcccctggtattacactatctctttgagtaaaagttag
gtcactgcccttcacaggaatttaccatcactaaggaagaaagaagtttc
tgaccgtaggagaaaccagaatagatatttagaattatagctgagttaca
cctatatacaggaatttacaatggtttaggaagtagatcgggctgtggtt
ttagagtattgcattattcatgagatggttagctagaacggaactcccta
gttagaaccatgacttgggtgtgaaagcccttgccctaggagtgaaaagt
tctcacacctggcttctaagactatagctgaccttagatagggctgactc
tgtctcaattattttattgcccagttcctgccagtctttgcgttttcatt
cctctgttctgtgtaagagtcattaagcatccggttacctcatttgtacc
ttgtgggtatgtcacccaacttccttattgtcttctgcataaaaagtctg
atgttcgatttgacaaattacattcagattccacacaaactctcctgcgt
gtgtgtctgtctgtcattcatccacgctttgcccacctgcgtcgagagac
cccgttccacgcagacacagggacccagaaggtcagcggcacctgcgcaa
gttctccatgagggactggggcatcgagcagaagtggatgtctgtcctcc
tggccctgctgctgctctacaatggtgggtgccgtctttatctccaatct
ttcccccgcttggattgtgagcctggcaggcattgtaaatagtggcctgg
tcccagagtccccaggagtgcccgaggggagtccctgggggagtatgtcg
tggtgcttcttctgggccccatgtcacacaggcccacttgcagatggttg
gatcctgaagagacacgaagctgcaggctcagcagtcttggaacttggct
gaggtgcccgtgctttttttccttcctctgtccccattccaaaaggccct
tgcgtgcagtggcaggaagattcttcgggctgca
gaattccaagcccaaggtcttgctaaggaagaactaggactgttggaaca
caggcggacggctttagctatgtcagaattcaatcttaaaaggcacttat
gataggaaaaaattgaaagagagcacgtggatccatacactagactaacg
cggggatggaactcgggaatgaaagattgctgtatgggtagggaacgcta
gactccaggaggagagcttccttgaaactcttttgcctcatgagtgactt
ttaagcctctcggcttgtccagttgactcgaccagagagcgtagcactca
gggaatgtacaaacaggcactgcaaagcaaacagccactgactgcctgca
gggtgagtctcacccagtcagggaggtaccaggcaggatccattgggcca
gtcactgcttaaaatgactaacgtggtcccatcagtgacagtgacagcca
aaacaaaacaaaaaaaaatatgattgctgcgtgtggccacgggtgacagg
ggtcgcacccttgcatttcggcttgggccgagaggcaaagtcatgccacc
cagaggcaagtattctctcaaacacctccatgtgtgtgtagagcccttgg
gagaaagttctctaaacagctctcacacactgtacagtgtgttatatcta
gggctgttatcctttttccttgtcatctaacataaactactaatttcctg
gcctgtgtgctgttttctactgagattcaggcctcttccccatttaagaa
catatttagggctgtgtgcatcaatctttaggccctaggagaatccagac
accaggtagttctcaaaaaaaaaaaaataaaaaaaagccatgcagtgggt
ggcgcacgctctttaatcgcagtacttgggaggcagaggcaggcagattt
tctgagttctaggtcagactgatctacagaatgagttcttgggacaccag
gaacagctggggctatacagagaaatcctgtctcgaaaaaccaaaaccaa
aacaaacaaaaattctgtgagacttgctatgaggaggccagtgttccact
tcattctcattgctctcagttctgattcaggtcctttttctaccactcgt
aaccttggcccaatgccatggctgtcccggggtctctaacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_6634951_6635833
seq2: B6Ng01-245G16.b_191_1082

seq1  GAGTTACACCTATATACAGGAATTTACAATGGTTTAGGAAGTAGATCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACACCTATATACAGGAATTTACAATGGTTTAGGAAGTAGATCGGG  50

seq1  CTGTGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAACGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAACGGA  100

seq1  ACTCCCTAGTTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCCTAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTAGTTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCCTAGGAG  150

seq1  TGAAAAGTTCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTTCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGG  200

seq1  GCTGACTCTGTCTCAATTATTTTATTGCCCAGTTCCTGCCAGTCTTTGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTCTGTCTCAATTATTTTATTGCCCAGTTCCTGCCAGTCTTTGCG  250

seq1  TTTTCATTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTTACCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTTACCTCA  300

seq1  TTTGTACCTTGTGGGTATGTCACCCAACTTCCTTATTGTCTTCTGCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACCTTGTGGGTATGTCACCCAACTTCCTTATTGTCTTCTGCATAA  350

seq1  AAAGTCTGATGTTCGATTTGACAAATTACATTCAGATTCCACACAAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGATGTTCGATTTGACAAATTACATTCAGATTCCACACAAACTC  400

seq1  TCCTGCGTGTGTGTCTGTCTGTCATTCATCCACGCTTTGCCCACCTGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCGTGTGTGTCTGTCTGTCATTCATCCACGCTTTGCCCACCTGCGT  450

seq1  CGAGAGACCCCGTTCCACGCAGACACAGGGACCCAGAAGGTCAGCGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGACCCCGTTCCACGCAGACACAGGGACCCAGAAGGTCAGCGGCAC  500

seq1  CTGCGCAAGTTCTCCATGAGGGACTGGGGCATCGAGCAGAAGTGGATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCAAGTTCTCCATGAGGGACTGGGGCATCGAGCAGAAGTGGATGTC  550

seq1  TGTCCTCCTGGCCCTGCTGCTGCTCTACAATGGTGGGTGCCGTCTTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCCTGGCCCTGCTGCTGCTCTACAATGGTGGGTGCCGTCTTTATC  600

seq1  TCCAATCTTT-CCCCGCTTGGATTGTGAG-CTGGCAGGCATTGTAAATAG  648
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  TCCAATCTTTCCCCCGCTTGGATTGTGAGCCTGGCAGGCATTGTAAATAG  650

seq1  TGGCCTGGTCCCAGAGTCCCCAGGAGTGCCCGAGGGGAGTCCCTGGGGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGTCCCAGAGTCCCCAGGAGTGCCCGAGGGGAGTCCCTGGGGGA  700

seq1  GTATGTCGTGGTGCTCTTCCTGGGCCCCATGTCACACAGG-CCAC-TGCA  746
      |||||||||||||||  | ||||||||||||||||||||| |||| ||||
seq2  GTATGTCGTGGTGCTTCTTCTGGGCCCCATGTCACACAGGCCCACTTGCA  750

seq1  GATGGTTGGATCCTGAAGAGACACGAAGCTGCAGGCTCAGCAGTCTTGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGGATCCTGAAGAGACACGAAGCTGCAGGCTCAGCAGTCTTGGA  800

seq1  ACTTGGCTGAGGTGCCCGTGCTCTGTCT-CTTCCTCTGTCCCCATTCCAA  845
      |||||||||||||||||||||| | | | |||||||||||||||||||||
seq2  ACTTGGCTGAGGTGCCCGTGCTTTTTTTCCTTCCTCTGTCCCCATTCCAA  850

seq1  AAGGCCCTTGC-TGCAGT-GCAGG-AGATTC-TCGGGCTGCA  883
      ||||||||||| |||||| ||||| |||||| ||||||||||
seq2  AAGGCCCTTGCGTGCAGTGGCAGGAAGATTCTTCGGGCTGCA  892

seq1: chr17_6449304_6450464
seq2: B6Ng01-245G16.g_68_1211

seq1  GAATTCCAAGCCCAAGGTCTTGCTAAGGAAGAACTAGGACTGTTGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAAGGTCTTGCTAAGGAAGAACTAGGACTGTTGGAACA  50

seq1  CAGGCGGACGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGGACGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTAT  100

seq1  GATAGGAAAAAATTGAAAGAGAGCACGTGGATCCATACACTAGACTAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAAAAAATTGAAAGAGAGCACGTGGATCCATACACTAGACTAACG  150

seq1  CGGGGATGGAACTCGGGAATGAAAGATTGCTGTATGGGTAGGGAACGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGATGGAACTCGGGAATGAAAGATTGCTGTATGGGTAGGGAACGCTA  200

seq1  GACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTT  250

seq1  TTAAGCCTCTCGGCTTGTCCAGTTGACTCGACCAGAGAGCGTAGCACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCTCTCGGCTTGTCCAGTTGACTCGACCAGAGAGCGTAGCACTCA  300

seq1  GGGAATGTACAAACAGGCACTGCAAAGCAAACAGCCACTGACTGCCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTACAAACAGGCACTGCAAAGCAAACAGCCACTGACTGCCTGCA  350

seq1  GGGTGAGTCTCACCCAGTCAGGGAGGTACCAGGCAGGATCCATTGGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGTCTCACCCAGTCAGGGAGGTACCAGGCAGGATCCATTGGGCCA  400

seq1  GTCACTGCTTAAAATGACTAACGTGGTCCCATCAGTGACAGTGACAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGCTTAAAATGACTAACGTGGTCCCATCAGTGACAGTGACAGCCA  450

seq1  AAACAAAACAAAAAAAAATATGATTGCTGCGTGTGGCCACGGGTGACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAAAAAAATATGATTGCTGCGTGTGGCCACGGGTGACAGG  500

seq1  GGTCGCACCCTTGCATTTCGGCTTGGGCCGAGAGGCAAAGTCATGCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCACCCTTGCATTTCGGCTTGGGCCGAGAGGCAAAGTCATGCCACC  550

seq1  CAGAGGCAAGTATTCTCTCAAACACCTCCATGTGTGTGTAGAGCCCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAAGTATTCTCTCAAACACCTCCATGTGTGTGTAGAGCCCTTGG  600

seq1  GAGAAAGTTCTCTAAACAGCTCTCACACACTGTACAGTGTGTTATATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTTCTCTAAACAGCTCTCACACACTGTACAGTGTGTTATATCTA  650

seq1  GGGCTGTTATCCTTTTTCCTTGTCATCTAACATAAACTACTAATTTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTATCCTTTTTCCTTGTCATCTAACATAAACTACTAATTTCCTG  700

seq1  GCCTGTGTGCTGTTTTCTACTGAGATTCAGGCCTCTTCCCCATTTAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGCTGTTTTCTACTGAGATTCAGGCCTCTTCCCCATTTAAGAA  750

seq1  CATATTTAGGGCTGTGTGCATCAATCTTTAGGCCCTAGGAGAATCCAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAGGGCTGTGTGCATCAATCTTTAGGCCCTAGGAGAATCCAGAC  800

seq1  ACCAGGTAGTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGCCATGCAGT  850
      ||||||||||||||    ||||||||||||| ||||||||||||||||||
seq2  ACCAGGTAGTTCTC----AAAAAAAAAAAAATAAAAAAAAGCCATGCAGT  846

seq1  -GGTGGCGCACGC-CTTTAATCGCAGTACTTGGGAGGCAGAGGCAGGCAG  898
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCGCACGCTCTTTAATCGCAGTACTTGGGAGGCAGAGGCAGGCAG  896

seq1  A-TTTCTGAGTTCTAGGTCAGACTGATCTACAGAATGAGTTC-TGGGACA  946
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTTTCTGAGTTCTAGGTCAGACTGATCTACAGAATGAGTTCTTGGGACA  946

seq1  CCAGG-ACAGCTGGGGCTATACAGAGAAATCCTGTCTCGAAAAACCAAAA  995
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAACAGCTGGGGCTATACAGAGAAATCCTGTCTCGAAAAACCAAAA  996

seq1  CCAAAACAAAACAAAAAATTCTGTGAGACTTGCTATGAGGGAGGCCAGTG  1045
      ||||||||||   ||||||||||||||||||||||||| |||||||||||
seq2  CCAAAACAAA--CAAAAATTCTGTGAGACTTGCTATGA-GGAGGCCAGTG  1043

seq1  GTCCACTTCATTCTCCATGGCCTCCAGTCAAGGGTCCAGGGCCCTTTTTC  1095
       ||||||||||||| ||| ||   ||||   |  ||   || ||||||||
seq2  TTCCACTTCATTCT-CATTGCTCTCAGTTCTGATTC--AGGTCCTTTTTC  1090

seq1  TACCACACTTCCTACACCTTTGCCACATGCCTATGTGCTGGTCTCCACGG  1145
      ||||||   || || ||||| |||  ||||| ||| ||||   ||| || 
seq2  TACCAC---TCGTA-ACCTTGGCCCAATGCC-ATG-GCTG---TCC-CG-  1129

seq1  TGGGTCTCTAACACAC  1161
       |||||||||||||||
seq2  -GGGTCTCTAACACAC  1144