BAC Information

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BAC

Clone NameB6Ng01-246F06
Chromosome17 (Build37)
Map Location 23,443,918 - 23,523,337
singlet/doubletdoublet
Overlap geneEG666002, EG638102, EG619697
Upstream geneEG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133
Downstream geneEG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246F06.bB6Ng01-246F06.g
ACCGA054969GA054970
length1,1681,064
definitionB6Ng01-246F06.b B6Ng01-246F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,522,191 - 23,523,337)(23,443,918 - 23,445,457)
sequence
gaattctcaccctgcctccaaacatacacacacacacacacacacacaca
cacacacacacacacacacacacacacacagagagagagagagagagaga
gagagagagagagagagagagagagagagagattgagagaaaccacataa
tcacacacataaaaatttacctggtcagacaagaagttacttaggattgt
atgaagtgtcacagttgttgcccaattcatgtttgtaagggccagtatac
atttggttaattcttcacacaaataattagggagattatcagaattttgt
aaaccaaaacgaatgagactcaattcagattcccattcacaactgtctgc
tgagaatataaatattagagacatatttggcaaaagatcagggttcctgt
tgatttcatatatggaaaaagccaaagccagagcatacttgtggttttca
gtgtgagttctgtaaaaggttatattgtttataattgacagcaatttaca
gatatcatttgcagtcaataaatggacaaatctgcactggatttcattgt
ccccaccccatgaagattgaaatgatctgtgtaatgtggttgagatgaca
aagaagctggaagttcataaaaccttgaaatgttcatgaaaggtcaacta
tcataaatgagatgtcactactattagtaataacatcacttttcaaagaa
cacatacagaacccttagagtccatccattgcttccttgttctaaggaga
gaatgaagaactggactttgtaagttgttaaagccaataatttgtataga
tcaaaatgtacacttgagagtggaaaaatatcttcattttttaaatgaag
cacctgtacataaatggggactacatggacgaaattttagaaagtaagtg
aatatctatatgaaagttcttgtataactaggtattgtcttccaatatta
gtggccccagcacatgcactagaacttacactggtgattggaaggactta
tcattagtctcctatattggcaattttgccttaaacaccctaggataaag
tcatagaaaaattttatggttcattcttattgattaagaataccatggga
ttccaatggaaattgaaattgtcttagggagatatttcagttgacaggta
acggtttaaatttgtttt
gaattcttaatcacattgaggaagaatagtaactttaaatttcatactat
cagagcaacaggagatattacttcaaatgaaactgggcagtttgaatatg
atgtattaaaacttatcacatcagaattcatacctatgttatacctatca
tgcatattagatatataattttcaaattttctcaaaagcaaaaatttttt
actaccaatttctcctcgtatagagaatgcaacttgcacaggcttcttta
tttgaatgacccatgcaaaaatgaatgggccagacaagtttgctttagtg
agcattatcttttgcaaggtatgatccagggctattgacatggctaaaat
ctcaaaaataatttttactcaggagaaggacctgtgtttaatttccagca
cccactatgtggcaagaagctcttgcaaatgctttgaggtttgaataact
cttccgctatccatatattctacacatgcaggttttgcacagatgtacat
gtagacaaaacgtccataccaacataaaaaagaaagagaaaaagagaagg
tatagtttgaaaggtatcaaattttttgtaaaatattaatgtatggttat
gtagaggtgtaggaaatttaggactaattgttaaacaggtttaaaaacta
tataataaaaatctgtgacttggatatgatacatttactctctctttaca
aagaaccagattctttaaacatcctttgaaagcgttttatcataagatgg
aaactcactctgtaagagtaatatttggactaatactatatttgctcagt
atactggaaataatagaaactattttctaaaacagttaagttaatattaa
aggcatgaaacaggttctgatatgatacaaattattaatgttattgtatt
aatgttgggaaatcctcaatgaattactttaaagtgactttaaacattga
aaaataacatagtataggatgctaccaaatccagttctttgccaccatgg
gtaatcaattttacctcaccagttttcaaagaaagtttgggatgcaacac
acctgacagtcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23522191_23523337
seq2: B6Ng01-246F06.b_45_1212 (reverse)

seq1  AAAACAAATTTAAACCTTTACCTGTC-ACTTAAATATCTCCCT-AGACAA  48
      |||||||||||||||| ||||||||| ||| |||||||||||| ||||||
seq2  AAAACAAATTTAAACCGTTACCTGTCAACTGAAATATCTCCCTAAGACAA  50

seq1  TTTCCATTTC--ATGGGATCCCATGGTA-TCTT-ATCAAT-AGAATG-AC  92
      |||| |||||   ||| ||||||||||| |||| |||||| |||||| ||
seq2  TTTCAATTTCCATTGGAATCCCATGGTATTCTTAATCAATAAGAATGAAC  100

seq1  CATAAA--TTTTCTATGACTTTATCCTA-GGTGTTT-AGGC-AAATTGCC  137
      ||||||  |||||||||||||||||||| ||||||| |||| ||||||||
seq2  CATAAAATTTTTCTATGACTTTATCCTAGGGTGTTTAAGGCAAAATTGCC  150

seq1  -ATATA-GAGACTTATGAT-AGTCCTTCC-ATCA-CAGTGTAGTTTCTAG  182
       ||||| |||||| ||||| ||||||||| |||| |||||||  ||||||
seq2  AATATAGGAGACTAATGATAAGTCCTTCCAATCACCAGTGTAAGTTCTAG  200

seq1  TGCATGTGCTGGGGCCACTAATATTGG-AGAC-ATACCTAGTTATAC-AG  229
      ||||||||||||||||||||||||||| |||| |||||||||||||| ||
seq2  TGCATGTGCTGGGGCCACTAATATTGGAAGACAATACCTAGTTATACAAG  250

seq1  AACTTTCATATAGATATTCACTTACTTTCTAAAATTTCGTCCATGTAGTC  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCATATAGATATTCACTTACTTTCTAAAATTTCGTCCATGTAGTC  300

seq1  CCCATTTATGTACAGGTGCTTCATTTAAAAAATGAAGATATTTTTCCACT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTATGTACAGGTGCTTCATTTAAAAAATGAAGATATTTTTCCACT  350

seq1  CTCAAGTGTACATTTTGATCTATACAAATTATTGGCTTTAACAACTTACA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGTACATTTTGATCTATACAAATTATTGGCTTTAACAACTTACA  400

seq1  AAGTCCAGTTCTTCATTCTCTCCTTAGAACAAGGAAGCAATGGATGGACT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAGTTCTTCATTCTCTCCTTAGAACAAGGAAGCAATGGATGGACT  450

seq1  CTAAGGGTTCTGTATGTGTTCTTTGAAAAGTGATGTTATTACTAATAGTA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGTTCTGTATGTGTTCTTTGAAAAGTGATGTTATTACTAATAGTA  500

seq1  GTGACATCTCATTTATGATAGTTGACCTTTCATGAACATTTCAAGGTTTT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCTCATTTATGATAGTTGACCTTTCATGAACATTTCAAGGTTTT  550

seq1  ATGAACTTCCAGCTTCTTTGTCATCTCAACCACATTACACAGATCATTTC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTCCAGCTTCTTTGTCATCTCAACCACATTACACAGATCATTTC  600

seq1  AATCTTCATGGGGTGGGGACAATGAAATCCAGTGCAGATTTGTCCATTTA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCATGGGGTGGGGACAATGAAATCCAGTGCAGATTTGTCCATTTA  650

seq1  TTGACTGCAAATGATATCTGTAAATTGCTGTCAATTATAAACAATATAAC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGCAAATGATATCTGTAAATTGCTGTCAATTATAAACAATATAAC  700

seq1  CTTTTACAGAACTCACACTGAAAACCACAAGTATGCTCTGGCTTTGGCTT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACAGAACTCACACTGAAAACCACAAGTATGCTCTGGCTTTGGCTT  750

seq1  TTTCCATATATGAAATCAACAGGAACCCTGATCTTTTGCCAAATATGTCT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATATATGAAATCAACAGGAACCCTGATCTTTTGCCAAATATGTCT  800

seq1  CTAATATTTATATTCTCAGCAGACAGTTGTGAATGGGAATCTGAATTGAG  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTTATATTCTCAGCAGACAGTTGTGAATGGGAATCTGAATTGAG  850

seq1  TCTCATTCGTTTTGGTTTACAAAATTCTGATAATCTCCCTAATTATTTGT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCGTTTTGGTTTACAAAATTCTGATAATCTCCCTAATTATTTGT  900

seq1  GTGAAGAATTAACCAAATGTATACTGGCCCTTACAAACATGAATTGGGCA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAATTAACCAAATGTATACTGGCCCTTACAAACATGAATTGGGCA  950

seq1  ACAACTGTGACACTTCATACAATCCTAAGTAACTTCTTGTCTGACCAGGT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTGACACTTCATACAATCCTAAGTAACTTCTTGTCTGACCAGGT  1000

seq1  AAATTTTTATGTGTGTGATTATGTGGTTTCTCTCAATCTCTCTCTCTCTC  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTATGTGTGTGATTATGTGGTTTCTCTCAATCTCTCTCTCTCTC  1050

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTG  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTG  1100

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTG  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTG  1150

seq1  GAGGCAGGGTGAGAATTC  1147
      ||||||||||||||||||
seq2  GAGGCAGGGTGAGAATTC  1168

seq1: chr17_23443918_23445457
seq2: B6Ng01-246F06.g_70_1133

seq1  GAATTCTTAATCACATTGAGGAAGAATAGTAACTTTAAATTTCATACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATCACATTGAGGAAGAATAGTAACTTTAAATTTCATACTAT  50

seq1  CAGAGCAACAGGAGATATTACTTCAAATGAAACTGGGCAGTTTGAATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAACAGGAGATATTACTTCAAATGAAACTGGGCAGTTTGAATATG  100

seq1  ATGTATTAAAACTTATCACATCAGAATTCATACCTATGTTATACCTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTAAAACTTATCACATCAGAATTCATACCTATGTTATACCTATCA  150

seq1  TGCATATTAGATATATAATTTTCAAATTTTCTCAAAAGCAAAAATTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTAGATATATAATTTTCAAATTTTCTCAAAAGCAAAAATTTTTT  200

seq1  ACTACCAATTTCTCCTCGTATAGAGAATGCAACTTGCACAGGCTTCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAATTTCTCCTCGTATAGAGAATGCAACTTGCACAGGCTTCTTTA  250

seq1  TTTGAATGACCCATGCAAAAATGAATGGGCCAGACAAGTTTGCTTTAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGACCCATGCAAAAATGAATGGGCCAGACAAGTTTGCTTTAGTG  300

seq1  AGCATTATCTTTTGCAAGGTATGATCCAGGGCTATTGACATGGCTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATCTTTTGCAAGGTATGATCCAGGGCTATTGACATGGCTAAAAT  350

seq1  CTCAAAAATAATTTTTACTCAGGAGAAGGACCTGTGTTTAATTTCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAATAATTTTTACTCAGGAGAAGGACCTGTGTTTAATTTCCAGCA  400

seq1  CCCACTATGTGGCAAGAAGCTCTTGCAAATGCTTTGAGGTTTGAATAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTATGTGGCAAGAAGCTCTTGCAAATGCTTTGAGGTTTGAATAACT  450

seq1  CTTCCGCTATCCATATATTCTACACATGCAGGTTTTGCACAGATGTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGCTATCCATATATTCTACACATGCAGGTTTTGCACAGATGTACAT  500

seq1  GTAGACAAAACGTCCATACCAACATAAAAAAGAAAGAGAAAAAGAGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAAAACGTCCATACCAACATAAAAAAGAAAGAGAAAAAGAGAAGG  550

seq1  TATAGTTTGAAAGGTATCAAATTTTTTGTAAAATATTAATGTATGGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTGAAAGGTATCAAATTTTTTGTAAAATATTAATGTATGGTTAT  600

seq1  GTAGAGGTGTAGGAAATTTAGGACTAATTGTTAAACAGGTTTAAAAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGTGTAGGAAATTTAGGACTAATTGTTAAACAGGTTTAAAAACTA  650

seq1  TATAATAAAAATCTGTGACTTGGATATGATACATTTACTCTCTCTTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAAAATCTGTGACTTGGATATGATACATTTACTCTCTCTTTACA  700

seq1  AAGAACCAGATTCTTTAAACATCCTTTGAAAGCG-TTTATCATAAGATGG  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGAACCAGATTCTTTAAACATCCTTTGAAAGCGTTTTATCATAAGATGG  750

seq1  AAACTCACTCTGTAAGAGTAATATTTGGACTAATACTATA-TTGCTCAGT  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAACTCACTCTGTAAGAGTAATATTTGGACTAATACTATATTTGCTCAGT  800

seq1  ATACTGGAAATAATAGAAACTATTTTCTAAAACAGTTAAGTTAATATTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGAAATAATAGAAACTATTTTCTAAAACAGTTAAGTTAATATTAA  850

seq1  AGGCATGAAACAGGTTCTGATATGATACAAATTATTAATGTTATTGTATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGAAACAGGTTCTGATATGATACAAATTATTAATGTTATTGTATT  900

seq1  AATGTT-GGAAATCCTCAATGAATTACTTAAAAGTGAC-TTAAACATGAA  946
      |||||| |||||||||||||||||||||| |||||||| ||||||||  |
seq2  AATGTTGGGAAATCCTCAATGAATTACTTTAAAGTGACTTTAAACATTGA  950

seq1  AAAATAAACATAGTATAGGATGCTA-CAAAT-CAGT--CTTGC--ACAT-  989
      ||||| ||||||||||||||||||| ||||| ||||   ||||   ||| 
seq2  AAAAT-AACATAGTATAGGATGCTACCAAATCCAGTTCTTTGCCACCATG  999

seq1  GGTAATCAATTTTACCTCACCAGTTT--CAAGAAAGTTT-GGATGC-ACA  1035
      ||||||||||||||||||||||||||   |||||||||| |||||| |||
seq2  GGTAATCAATTTTACCTCACCAGTTTTCAAAGAAAGTTTGGGATGCAACA  1049

seq1  CA-CTGACAGTTCAATTTAAATTAGTACAATTAGGCTGAACCCACCTGTG  1084
      || ||||||| |||                                    
seq2  CACCTGACAG-TCATG----------------------------------  1064

seq1  CACTTCCTTTTGCCCACTCTATCATATCTTCAGATAAATGTACTTGTTGA  1134
                                                        
seq2  --------------------------------------------------  1064

seq1  CCATTTGGAAAGTATGGACTAAACATTCCTATTTTAACTCTAAGTTCAAG  1184
                                                        
seq2  --------------------------------------------------  1064

seq1  GCCCTGTGGGAAATTCCAAATGTAGAAAATGTCATACTCTTCCTGCAGTT  1234
                                                        
seq2  --------------------------------------------------  1064

seq1  TGTCTCTTTGGTTCATATTCACTCTGTCCCCAACCGGATTAGTGAACTGG  1284
                                                        
seq2  --------------------------------------------------  1064

seq1  GTCTTTCTCAGAAAGGAATACAGCTGAAAGACAGTCAGAATAATATATAG  1334
                                                        
seq2  --------------------------------------------------  1064

seq1  TCTCTTTCTTAAGGTAAGAAAATATGTTCTTATTTCCTCTTAAAGACAAC  1384
                                                        
seq2  --------------------------------------------------  1064

seq1  TTTATTGACACTATGCCAGTGAAAATTTCAGTGAAATTCAATGGATGTAC  1434
                                                        
seq2  --------------------------------------------------  1064

seq1  AAAATTATAATTTTGCTGTTATTTTAGTTCTCTAAGAGATTACCAATCAA  1484
                                                        
seq2  --------------------------------------------------  1064

seq1  GTACAAACATATGTGTAGACATCAAATATATTTGCAGTATGAAACACAGA  1534
                                                        
seq2  --------------------------------------------------  1064

seq1  CACATG  1540
            
seq2  ------  1064