BAC Information

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BAC

Clone NameB6Ng01-249F24
Chromosome17 (Build37)
Map Location 14,807,338 - 14,808,488
singlet/doubletsinglet
Overlap geneThbs2
Upstream geneTcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856
Downstream geneLOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249F24.bB6Ng01-249F24.g
ACCGA057213GA057214
length1,1451,172
definitionB6Ng01-249F24.b B6Ng01-249F24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataccttctgcttcttgggtgtggagctatgaacaaaactgaca
ctgtaagtcctgtctctgcaaaagactggacatgtgttcagtctttccaa
ccagaagcactgggcatttcgtgctcaataaagtaggtattccacaccaa
ctattaaaatgattgctatttgattaaaattaagggcagaagggtatctc
tttggaacaggttaggagtgcagggtctgtctggaaatggccatcaactg
ccccgtccctcacctggccttctgtgtttcccgtgtgccacagggcattc
ctcaggtgctcgccagtaccagtcgtggagtttaccactttgagtgacac
accagagtagccgtaagcccgactgggcttgtcttcccagtaggtctggg
tcacctgcttccacatcaccacatagaagcggctgcttgactgatagcca
aagacaaagccagcgtagtcatcatcccggtcagtgttgacatagaaagt
gccactgaagtccacagacccaaactcgtcgaaacctgagtgcagagaaa
acatggatggtctggtggcccagagaaaagcacattgggaacttcagaag
tccatctcacagaaacgtggatctgaagagcttagattagcttagataac
ctctgctcttcgctgagagagcagcaaaaggacttgtgacccagctgaca
gttttgtgacagaagctccagtgtctcatgtattgtttcagagagtccat
aacatgagctggcttactgaacaccaaattccataggtcagagagttgca
aacctgtgctttcccagagcccttaaccagattatgaagggagactattc
cacataccaaggaagggtaaaggctaccagaaaaattatcctaaatcctg
accacatggtctctctgaactacccacaggatctcaggctcacctacagc
gatgccagggtctgagtttgctgtctgcacagctctttgccttggtgacg
aattacccagttgggatcatttgtgtggtccctttgggatcagagggaca
tctgagttctgaagtcttgtctcagtgatgccattgtctcaagcacacat
catcatatctgggacgttaatcaattggtcaagtcatctttacaa
gaattctcacatgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggtttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacaaaatgtactcactgataagtggatattagcccaaaaccta
ggatacccaagatataagatacaatttcctaaacacatgaaactcaagaa
aaatgaagactgaagtgtggacactatgcccctccttagaagtgggaaca
aaacacccttggaaggagttacagagacaaagtttggagctgagatgaaa
ggatggaccatgtagggactgccttatccagggatccaccccataatcag
catccaaacgctgacaccattgcatacactagcaagattttatcgaaagg
acccagatgtagctgtctcttgtgagactatgcccgggccctagcaaaca
cagaagtggatgcccacagtcagctaatggatggattacagggctcccaa
tggaggagctagagaaagtacccaaggagctaaagggatctgcaacccta
tagtgatcacattatgactaaccagtaccccgagctctgactctagctgc
aatatgtatcaaaagatggctagtcgcatcactgggaaggaagtccaatg
tacccacaaacctttaattgccgacagtaacgcagttcaaagggagtggc
cgggatgacggcatgtctgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_14807338_14808488
seq2: B6Ng01-249F24.b_51_1195

seq1  GAATTCATACCTTCTGCTTCTTGGGTGTGGAGCTATGAACAAAACTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCTTCTGCTTCTTGGGTGTGGAGCTATGAACAAAACTGACA  50

seq1  CTGTAAGTCCTGTCTCTGCAAAAGACTGGACATGTGTTCAGTCTTTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTCCTGTCTCTGCAAAAGACTGGACATGTGTTCAGTCTTTCCAA  100

seq1  CCAGAAGCACTGGGCATTTCGTGCTCAATAAAGTAGGTATTCCACACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCACTGGGCATTTCGTGCTCAATAAAGTAGGTATTCCACACCAA  150

seq1  CTATTAAAATGATTGCTATTTGATTAAAATTAAGGGCAGAAGGGTATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAATGATTGCTATTTGATTAAAATTAAGGGCAGAAGGGTATCTC  200

seq1  TTTGGAACAGGTTAGGAGTGCAGGGTCTGTCTGGAAATGGCCATCAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACAGGTTAGGAGTGCAGGGTCTGTCTGGAAATGGCCATCAACTG  250

seq1  CCCCGTCCCTCACCTGGCCTTCTGTGTTTCCCGTGTGCCACAGGGCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTCCCTCACCTGGCCTTCTGTGTTTCCCGTGTGCCACAGGGCATTC  300

seq1  CTCAGGTGCTCGCCAGTACCAGTCGTGGAGTTTACCACTTTGAGTGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGCTCGCCAGTACCAGTCGTGGAGTTTACCACTTTGAGTGACAC  350

seq1  ACCAGAGTAGCCGTAAGCCCGACTGGGCTTGTCTTCCCAGTAGGTCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGTAGCCGTAAGCCCGACTGGGCTTGTCTTCCCAGTAGGTCTGGG  400

seq1  TCACCTGCTTCCACATCACCACATAGAAGCGGCTGCTTGACTGATAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCTTCCACATCACCACATAGAAGCGGCTGCTTGACTGATAGCCA  450

seq1  AAGACAAAGCCAGCGTAGTCATCATCCCGGTCAGTGTTGACATAGAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGCCAGCGTAGTCATCATCCCGGTCAGTGTTGACATAGAAAGT  500

seq1  GCCACTGAAGTCCACAGACCCAAACTCGTCGAAACCTGAGTGCAGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGAAGTCCACAGACCCAAACTCGTCGAAACCTGAGTGCAGAGAAA  550

seq1  ACATGGATGGTCTGGTGGCCCAGAGAAAAGCACATTGGGAACTTCAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATGGTCTGGTGGCCCAGAGAAAAGCACATTGGGAACTTCAGAAG  600

seq1  TCCATCTCACAGAAACGTGGATCTGAAGAGCTTAGATTAGCTTAGATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCACAGAAACGTGGATCTGAAGAGCTTAGATTAGCTTAGATAAC  650

seq1  CTCTGCTCTTCGCTGAGAGAGCAGCAAAAGGACTTGTGACCCAGCTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCTTCGCTGAGAGAGCAGCAAAAGGACTTGTGACCCAGCTGACA  700

seq1  GTTTTGTGACAGAAGCTCCAGTGTCTCATGTATTGTTTCAGAGAGTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGACAGAAGCTCCAGTGTCTCATGTATTGTTTCAGAGAGTCCAT  750

seq1  AACATGAGCTGGCTTACTGAACACCAAATTCCATAGGTCAGAGAGTTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAGCTGGCTTACTGAACACCAAATTCCATAGGTCAGAGAGTTGCA  800

seq1  AACCTGTGCTTTCCCAGAGCCCTTAACCAGATTATGAAGGGAGACTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTGCTTTCCCAGAGCCCTTAACCAGATTATGAAGGGAGACTATTC  850

seq1  CACATACCAAGGAAGGGT-AAGGCTACCAGAAAAATTATCCTAAATCCTG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACATACCAAGGAAGGGTAAAGGCTACCAGAAAAATTATCCTAAATCCTG  900

seq1  ACCACATGGTCTCTCTGAACTACCCACAGGATCTCAGGCTCACCTACAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGTCTCTCTGAACTACCCACAGGATCTCAGGCTCACCTACAGC  950

seq1  GATGCCAGGGTCTGAGTTTGCTGTCTGCACCAGCTCTTTGCCTTGGTGAC  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GATGCCAGGGTCTGAGTTTGCTGTCTGCA-CAGCTCTTTGCCTTGGTGAC  999

seq1  GAATTACCCAGTTGGGATCAATTTGTGTGGTCCCCTTGGGATCCAGAGGG  1049
      ||||||||||||||||||| |||||||||||||| ||||||| |||||||
seq2  GAATTACCCAGTTGGGATC-ATTTGTGTGGTCCCTTTGGGAT-CAGAGGG  1047

seq1  ACCATCTGGAAGTTTCTGAAGTC-TGTCTCAGTGATGGCATTGTTCTCAG  1098
      | ||||||  || |||||||||| ||||||||||||| ||||| ||||| 
seq2  A-CATCTG--AG-TTCTGAAGTCTTGTCTCAGTGATGCCATTG-TCTCA-  1091

seq1  GGCACACATCATCAATATCTGGGACATT-ATC-ATTGTCAAAGTCATCTT  1146
       |||||||||||| ||||||||||| || ||| ||||   ||||||||||
seq2  AGCACACATCATC-ATATCTGGGACGTTAATCAATTGGTCAAGTCATCTT  1140

seq1  TACAA  1151
      |||||
seq2  TACAA  1145