BAC Information

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BAC

Clone NameB6Ng01-249I06
Chromosome17 (Build37)
Map Location 17,581,616 - 17,582,707
singlet/doubletsinglet
Overlap geneLix1
Upstream geneLOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2
Downstream geneLOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249I06.bB6Ng01-249I06.g
ACCGA057316GA057317
length1,0321,089
definitionB6Ng01-249I06.b B6Ng01-249I06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatagccactgtggctcaagatcttcaaaccaagatccagataag
gatctccaagcctccagataagggtcactggtgagccttccaattccgga
ttgtaattcattccaaatattgtcaagttgacaaccaggaatagccacta
caatccaccccttgtcaacttgacacaaataatatctcatgttcacataa
aacaataacaaggttgtaaatacgcctaacatgatataactatccctcgt
acaatcgcaaacgcattagtaaatttacaatgggcattcatattacttta
taatcctcgtttctgcaactggttacgtggccttaattggtatttataac
taccttcctctactacccattctgtatttccttcaccttcagccagcacc
tcagcaggtcttggctcttttcctggaggattgacccataccttcattcc
tgatgggtctgtgtcctttgtcatcctgcttggattaggctgttgtagtt
tcccattgactttaatcacaggacatggtagtactaagagacgccctaag
ggatctcctacactccagacataatcttgcttaccaccattgtgaagagg
taatccaatttccccatggtaatctggatctatcacccctcctaacactg
ttattccttttttagcctgttggtttaagggcattagaagcccaaaatga
ccagggggaagtctgagcttccagttcaatggaatgtttgttgtagctcc
tggtaggagcactcccctctctggagccaaaacttctaggccagcagaac
ctagagttatggggacaggaagcaaaaattttcctagagggtcactagga
gtgatagtaagtggaactattccgttttccaccccttgattcctggaccc
atgaatcctggctatgggtgaaactgtaccatatatcgagcgctgattca
aagcatatactgccttctgaagaactctaccccagccttccaagctgtta
ccactatttgccgctgtaactgcgtcttcaaa
gaattcctgtatatttgctatataatttgatgcttttgtgtctgctctgt
atggttgtcactgggagttactgaaaccttgaaacattgaccttaccctg
atttcaaggataatcaggcaagactctacaatagaacttaagtgcagttg
tatggccccttcctttcttcccgcatgtctcttaaaggaaacttttcata
atacgctactgttgggcgtctgttggtttatattttttatactcagacca
cttaatatttaagaatcaaggtaggcgacaggtagaaatgaagttcgttt
tcagctttcttgtagggaacggcaccaagcagcaaacacaagctctctga
aatggcattcagacctccttctgaggtctccctctaccccatggccttcg
agtcccaggatggtgggcgatagcaaggttctgagactgaacaaacaact
gtcagcgtcagacagcagtaaatgtatagctttgcatgcaataacattaa
cacagtgcttctgaaatatttatgttggccttttagaaatcctaggggaa
atccatccagaggtctgcaagccatatatattcttgctctttagaaattt
ccatgaaaaatgacaaattgcatttacattgagagccctttcctgttcct
aagtaaattccacgtgtatataaatcaggcatcattttcctaacttctct
tcctcaaaggcacttgaaatttacagggtcagaaaataaaggcttccttt
tctcttcagaccagatagagtgcagaactctccactttctcccagccagc
ctaccagccctactgtcctgcaggcccatctctcctctaagtgataagag
cacttcataaggggaaagagtccctaatagtctgatcatctcctttggca
gggcagcagctgccctgtaaaacagagtctgtcattcaggcaacaaaagg
agtggggggatggtggtcacacaatggcctttattccagccctcagaggc
agtagcaggcagattcctgtgaagtccagccagacttagtctacattgtg
agttcgaggactgctaggaactaagtttgtaaaccctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_17581616_17582707
seq2: B6Ng01-249I06.g_67_1155 (reverse)

seq1  ACAGGGTCTTAC-AACTTAG-TCCTGGCTGTCCTCGAACTCACTATGTAG  48
      ||||||| |||| ||||||| |||| || |||||||||||||| ||||||
seq2  ACAGGGT-TTACAAACTTAGTTCCTAGCAGTCCTCGAACTCACAATGTAG  49

seq1  ACT-AGTCTGGCCTGGACCTCACAGGAATCTGCCTGCTACTGCCTCCTGA  97
      ||| ||||||| |||||| |||||||||||||||||||||||||| ||||
seq2  ACTAAGTCTGG-CTGGACTTCACAGGAATCTGCCTGCTACTGCCT-CTGA  97

seq1  GGGCTGGAATTAAAGGCCATTGTGTGACCA-CAT-CCCCCACTCCCTTTT  145
      ||||||||| |||||||||||||||||||| ||| |||||||| ||||||
seq2  GGGCTGGAA-TAAAGGCCATTGTGTGACCACCATCCCCCCACT-CCTTTT  145

seq1  GTTGCCTTGAATTGACAGACTCTGTTTTTACAGGGCAGCTGCTGCCCTGC  195
      |||||| |||| |||||||||||| |||||||||||||||||||||||||
seq2  GTTGCC-TGAA-TGACAGACTCTG-TTTTACAGGGCAGCTGCTGCCCTGC  192

seq1  CAAAGGAGATGATCAGACTATTAGGGACTCTTTCCCCTTATGAAGTGCTC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGATGATCAGACTATTAGGGACTCTTTCCCCTTATGAAGTGCTC  242

seq1  TTATCACTTAGAGGAGAGATGGGCCTGCAGGACAGTAGGGCTGGTAGGCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTTAGAGGAGAGATGGGCCTGCAGGACAGTAGGGCTGGTAGGCT  292

seq1  GGCTGGGAGAAAGTGGAGAGTTCTGCACTCTATCTGGTCTGAAGAGAAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGAGAAAGTGGAGAGTTCTGCACTCTATCTGGTCTGAAGAGAAAA  342

seq1  GGAAGCCTTTATTTTCTGACCCTGTAAATTTCAAGTGCCTTTGAGGAAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCTTTATTTTCTGACCCTGTAAATTTCAAGTGCCTTTGAGGAAGA  392

seq1  GAAGTTAGGAAAATGATGCCTGATTTATATACACGTGGAATTTACTTAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAGGAAAATGATGCCTGATTTATATACACGTGGAATTTACTTAGG  442

seq1  AACAGGAAAGGGCTCTCAATGTAAATGCAATTTGTCATTTTTCATGGAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAAGGGCTCTCAATGTAAATGCAATTTGTCATTTTTCATGGAAA  492

seq1  TTTCTAAAGAGCAAGAATATATATGGCTTGCAGACCTCTGGATGGATTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAGAGCAAGAATATATATGGCTTGCAGACCTCTGGATGGATTTC  542

seq1  CCCTAGGATTTCTAAAAGGCCAACATAAATATTTCAGAAGCACTGTGTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGATTTCTAAAAGGCCAACATAAATATTTCAGAAGCACTGTGTTA  592

seq1  ATGTTATTGCATGCAAAGCTATACATTTACTGCTGTCTGACGCTGACAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTGCATGCAAAGCTATACATTTACTGCTGTCTGACGCTGACAGT  642

seq1  TGTTTGTTCAGTCTCAGAACCTTGCTATCGCCCACCATCCTGGGACTCGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTCAGTCTCAGAACCTTGCTATCGCCCACCATCCTGGGACTCGA  692

seq1  AGGCCATGGGGTAGAGGGAGACCTCAGAAGGAGGTCTGAATGCCATTTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGGGGTAGAGGGAGACCTCAGAAGGAGGTCTGAATGCCATTTCA  742

seq1  GAGAGCTTGTGTTTGCTGCTTGGTGCCGTTCCCTACAAGAAAGCTGAAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTGTGTTTGCTGCTTGGTGCCGTTCCCTACAAGAAAGCTGAAAA  792

seq1  CGAACTTCATTTCTACCTGTCGCCTACCTTGATTCTTAAATATTAAGTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTTCATTTCTACCTGTCGCCTACCTTGATTCTTAAATATTAAGTGG  842

seq1  TCTGAGTATAAAAAATATAAACCAACAGACGCCCAACAGTAGCGTATTAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTATAAAAAATATAAACCAACAGACGCCCAACAGTAGCGTATTAT  892

seq1  GAAAAGTTTCCTTTAAGAGACATGCGGGAAGAAAGGAAGGGGCCATACAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTTCCTTTAAGAGACATGCGGGAAGAAAGGAAGGGGCCATACAA  942

seq1  CTGCACTTAAGTTCTATTGTAGAGTCTTGCCTGATTATCCTTGAAATCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTTAAGTTCTATTGTAGAGTCTTGCCTGATTATCCTTGAAATCAG  992

seq1  GGTAAGGTCAATGTTTCAAGGTTTCAGTAACTCCCAGTGACAACCATACA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGTCAATGTTTCAAGGTTTCAGTAACTCCCAGTGACAACCATACA  1042

seq1  GAGCAGACACAAAAGCATCAAATTATATAGCAAATATACAGGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGACACAAAAGCATCAAATTATATAGCAAATATACAGGAATTC  1089