BAC Information

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BAC

Clone NameB6Ng01-249P10
Chromosome17 (Build37)
Map Location 15,076,876 - 15,210,322
singlet/doubletdoublet
Overlap geneWdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
Upstream geneEG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236
Downstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249P10.bB6Ng01-249P10.g
ACCGA057645GA057646
length860170
definitionB6Ng01-249P10.b B6Ng01-249P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,076,876 - 15,077,635)(15,210,153 - 15,210,322)
sequence
gaattccatatacttaaacaatatattttgatcctttctccctcttctcc
aactccttctgggctctgccacaaacaaatctcctcctatcttcctgtcc
tgtttttttggtttttgtttttgttttttttttttaaaataacccatggt
gtccaattagaacaagcagtgtatgcatggatcagggctattcagtgggg
catgaacacctaccagtggccacacccccaaaggaagatactttctactc
tttctcccctagaagctatcagttgccaatagttcttcaggtaggggtga
agtctcatgctggacttcttttttttttttttttttttttttttttttaa
aatttttttttttttttaaaatttatttatttattatatgtaagtacact
gtagctgtcttcaaacactccaaaaaagggcgtcaaatctcgttacggat
ggttgtgagccaccatgtggttgctgggatttgaactcctgaccttcggg
agagcagtcgggtgctcttacccactgagccatctcaccagccctcatgc
tggacttctgacagacttgatcatgtagaagtcttatactgacaaaaact
ttaaaagtaaaagcagaaagcaaacaaacagcgcgcaggactcagaattt
gacattatgaaaacattcaccatcattagtcagctcccctgtagtcaggt
accaccatgtggctgtgctctagcctgggcagcaggaggaagcatgagta
acagatctcactttataaccctggccctcggaagtctcacctacataact
ctcaacagtggttaaatacaaagtctgggcggggtggggaggggtgggct
accaaaggtg
cttccatgaaaaccaaacaatgatagcaagagttggatttgcacagaatt
acaaacagggaggccatggatggctgggaagcaggctcagtcccaatgct
gctgcatttgggaagttagagtactagtggtgggtttttgttgttgttgt
ttttgttttgttttgggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15076876_15077635
seq2: B6Ng01-249P10.b_147_909

seq1  TCCTGTTTTTTTGGTTTTTGTTTTTGTTTTTTTTTTTTAAAATAACCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTTTTTGGTTTTTGTTTTTGTTTTTTTTTTTTAAAATAACCCAT  50

seq1  GGTGTCCAATTAGAACAAGCAGTGTATGCATGGATCAGGGCTATTCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCAATTAGAACAAGCAGTGTATGCATGGATCAGGGCTATTCAGTG  100

seq1  GGGCATGAACACCTACCAGTGGCCACACCCCCAAAGGAAGATACTTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGAACACCTACCAGTGGCCACACCCCCAAAGGAAGATACTTTCTA  150

seq1  CTCTTTCTCCCCTAGAAGCTATCAGTTGCCAATAGTTCTTCAGGTAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCCCCTAGAAGCTATCAGTTGCCAATAGTTCTTCAGGTAGGGG  200

seq1  TGAAGTCTCATGCTGGACTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTCATGCTGGACTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  250

seq1  TATAATTTTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTAC  300
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAAAATTTTTTTTTTTTTTTAAAATTTATTTATTTATTATATGTAAGTAC  300

seq1  ACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTCGTTACG  350
      |||||||||||||||| |||||||| || ||||||||| |||||||||||
seq2  ACTGTAGCTGTCTTCAAACACTCCAAAAAAGGGCGTCAAATCTCGTTACG  350

seq1  GATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCTGACCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCTGACCTTC  400

seq1  GGGAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTCA  450

seq1  TGCTGGACTTCTGACAGACTTGATCATGTAGAAGTCTTATACTGACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACTTCTGACAGACTTGATCATGTAGAAGTCTTATACTGACAAAA  500

seq1  ACTTTAAAAGTAAAAGCAGAAAGCAAACAAACAGCGCGCAGGACTCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAAGTAAAAGCAGAAAGCAAACAAACAGCGCGCAGGACTCAGAA  550

seq1  TTTGACATTATGAAAACATTCACCATCATTAGTCAGCTCCCCTGTAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATTATGAAAACATTCACCATCATTAGTCAGCTCCCCTGTAGTCA  600

seq1  GGTACAACCATGTGGCTGTGCTCTAGCCTGGGCAGCAGGAGGAAGCATGA  650
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCACCATGTGGCTGTGCTCTAGCCTGGGCAGCAGGAGGAAGCATGA  650

seq1  GTAACAGATCTCACTTTATAACCCTGGCCCTCGGAAGTCTCACCTACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGATCTCACTTTATAACCCTGGCCCTCGGAAGTCTCACCTACATA  700

seq1  ACTCTCAACAGTGGTTAAATACAAAGTCTGGGCGGG--TGGGAGGGGT-G  747
      ||||||||||||||||||||||||||||||||||||   ||||||||| |
seq2  ACTCTCAACAGTGGTTAAATACAAAGTCTGGGCGGGGTGGGGAGGGGTGG  750

seq1  GCTACAAAAGGTG  760
      ||||| |||||||
seq2  GCTACCAAAGGTG  763

seq1: chr17_15210153_15210322
seq2: B6Ng01-249P10.g_71_240 (reverse)

seq1  CAACCCAAAACAAAACAAAAACAACAACAACAAAAACCCACCACTAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAAAACAAAACAAAAACAACAACAACAAAAACCCACCACTAGTAC  50

seq1  TCTAACTTCCCAAATGCAGCAGCATTGGGACTGAGCCTGCTTCCCAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTCCCAAATGCAGCAGCATTGGGACTGAGCCTGCTTCCCAGCCA  100

seq1  TCCATGGCCTCCCTGTTTGTAATTCTGTGCAAATCCAACTCTTGCTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCCTCCCTGTTTGTAATTCTGTGCAAATCCAACTCTTGCTATCA  150

seq1  TTGTTTGGTTTTCATGGAAG  170
      ||||||||||||||||||||
seq2  TTGTTTGGTTTTCATGGAAG  170