BAC Information

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BAC

Clone NameB6Ng01-250L17
Chromosome17 (Build37)
Map Location 40,537,406 - 40,538,147
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1
Downstream geneLOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250L17.bB6Ng01-250L17.g
ACCGA058196GA058197
length1,1041,097
definitionB6Ng01-250L17.b B6Ng01-250L17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttacctgaggaatactgaatggctgagaagtacctaaaaaaatt
ttcagcatttttaattatcagggaaatgcaaataaaatcaaccctgagat
tccacttcacactagccagaatggctaagatcaaaaattgaggtgacagc
agaacctggcaagtatgtggggaatgaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactactggaggatacagcaatacctcccctgggc
atatatccagaagatgtcccaaccagtaagaaggacacatgctcccactt
atgttcatagcagccttatttataatagcccagaagctggaaaagatccc
cagatgccccctcaacagaaggaatggagacagaaaaatgtggtacattt
taccccaatggaattaactacctcagctattaaaaaagaaaggatttttt
gaaatttcctaggccaatgggatgggacctggagggcatcaggctgaatg
agggaattcctattgcaaaagaactcaaagaaattgccccccctgaaaaa
tgggaattaagcctaaaaacctaaaaatccccaaaaattaggattcattt
ttaaaaccttttgaaacctcggaaagattaaaaaccaaagtttggacctt
tgcccctttttaaaatggggaaaaaacccccgggagggggttccaaaaaa
aatttgggacttaaaaaggagggccctttaaaggggttaacccggggatc
ctccctttatcagctcagcgcgtacccctgtgctcatagagaaaattttt
gaaagccctaataagcgctctggggagtatttgtggcccacacacatata
gggtcgcgcacacacccttctgggggtgcgagcggcctctcagggagcat
tatagaatacatcgcacacaggagtctctccccacgtgtagaggagacac
atgagagaccgccttctcgtagatgtgtctctatgatgtatgtaccaaga
gtactatgtgcgtcgctgggtagtgaagtgcgtcgttcgtagtactatgt
gctg
gaattcaccagagaactgggaggtgagagagccttaggactcaaagggag
ggaccttagatgaaaatgtcagacagtagagagcaagaacttatatgacc
caactccagcagaaagacagggcatcaagtgagggaaaggcttgccatct
cacagtcaaaactctgacccataattgttcctgtctgaaagaactgcagg
aatggaaatggagagtagcttgaggaaaagactgtctagggacaggcccg
aagtgaaatgaagctcaaggggagttcccaaagcctgacactattactga
ggttatggaacgctcacaaaaagggacctagcatgactaccctctgaaag
acccaacaagcagctaaaagagtcagatgcagatatttgcacccaaacaa
tggaaagaaactgctgatccctgtgattgaatcagggaaaacctggaaga
agctgaggagagtggtgatcctgtaggaggaccagcagtctcagttaacc
aggacccccgagatctttcagaccctagaccacacaccaggaagcacaca
ccagcttatatgaggcccccaacacatatatagcagaggattgctggatc
tgggctcagtcagagaagatgcacctaaccctcaagagactggaggcccc
agggagtttagacttctggttgtaagtgggtgagggtggagtacattctc
atggagaaagggggcaggaagtatgtatgggatgtgcaacccttgtaagg
tggaccgtgaccaggaagggaataaaatctggagtattaattaattaatt
aattacgcaaaggtttaaatttaaaatacatataaatagtattatttctc
tttgtctctgataacactttcctttgaaatatcattgatttcctatcagg
attgctgcacatccttcaacatcatcaactgaagctctctgttgctctat
cagcctctttgcgtgggttttgagctaaggacagtgacgtttcaaagatg
agtgatgcgactgtcgaatacactgaagattcctatgttaagtttttgta
tccaaaaaatactgtgcatgagaagacgaatagaaacaagtcctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_40537406_40538147
seq2: B6Ng01-250L17.g_422_1161

seq1  AAGCAGCTAAAAGAGTCAGATGCAGATATTTGCACCCAAACAATGGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTAAAAGAGTCAGATGCAGATATTTGCACCCAAACAATGGAAAG  50

seq1  AAACTGCTGATCCCTGTGATTGAATCAGGGAAAACCTGGAAGAAGCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTGATCCCTGTGATTGAATCAGGGAAAACCTGGAAGAAGCTGAG  100

seq1  GAGAGTGGTGATCCTGTAGGAGGACCAGCAGTCTCAGTTAACCAGGACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGGTGATCCTGTAGGAGGACCAGCAGTCTCAGTTAACCAGGACCC  150

seq1  CCGAGATCTTTCAGACCCTAGACCACACACCAGGAAGCACACACCAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGATCTTTCAGACCCTAGACCACACACCAGGAAGCACACACCAGCTT  200

seq1  ATATGAGGCCCCCAACACATATATAGCAGAGGATTGCTGGATCTGGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGGCCCCCAACACATATATAGCAGAGGATTGCTGGATCTGGGCTC  250

seq1  AGTCAGAGAAGATGCACCTAACCCTCAAGAGACTGGAGGCCCCAGGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGAAGATGCACCTAACCCTCAAGAGACTGGAGGCCCCAGGGAGT  300

seq1  TTAGACTTCTGGTTGTAAGTGGGTGAGGGTGGAGTACATTCTCATGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTCTGGTTGTAAGTGGGTGAGGGTGGAGTACATTCTCATGGAGA  350

seq1  AAGGGGGCAGGAAGTAGGTATGGGATGTGCAACCCTTGTAGGGTGGACCG  400
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  AAGGGGGCAGGAAGTATGTATGGGATGTGCAACCCTTGTAAGGTGGACCG  400

seq1  TGACCAGGAAGGGAATAAAATCTGGAGTATTAATTAATTAATTAATTAAG  450
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGACCAGGAAGGGAATAAAATCTGGAGTATTAATTAATTAATTAATTACG  450

seq1  CAAAGGTTTAAATTTAAAATACATATAAATAGTATTATTTTTCTTTTTCT  500
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  CAAAGGTTTAAATTTAAAATACATATAAATAGTATTATTTCTCTTTGTCT  500

seq1  CTGATAACACTTTCCTTTGAAATATCTTTAATTTCCTATCAGGGTTGTTG  550
      |||||||||||||||||||||||||| || ||||||||||||| ||| ||
seq2  CTGATAACACTTTCCTTTGAAATATCATTGATTTCCTATCAGGATTGCTG  550

seq1  CACATCCTTCAACATCATCAACTGAATTTCTCTGTTGCTCTATCA-CCTC  599
      ||||||||||||||||||||||||||  ||||||||||||||||| ||||
seq2  CACATCCTTCAACATCATCAACTGAAGCTCTCTGTTGCTCTATCAGCCTC  600

seq1  TTT-CGTGGGTTTTTGAGCTAAAGACAGTGACGTTTCAAATATGAATTAT  648
      ||| |||||| ||||||||||| ||||||||||||||||| |||| | ||
seq2  TTTGCGTGGG-TTTTGAGCTAAGGACAGTGACGTTTCAAAGATGAGTGAT  649

seq1  GCAACTGT-GAATACACTGAAGATCCCTAGGTT-AGTTTTTGTATTCAAA  696
      || ||||| ||||||||||||||| |||| ||| ||||||||||| ||||
seq2  GCGACTGTCGAATACACTGAAGATTCCTATGTTAAGTTTTTGTATCCAAA  699

seq1  AATTAATTGTTGGTATGAGAAGGACAGAGTAGAAACAAGTTCTGTT  742
      || | | |||  | ||||||| ||| || ||||||||||| |||||
seq2  AAAT-ACTGT--GCATGAGAA-GAC-GAATAGAAACAAGTCCTGTT  740