BAC Information

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BAC

Clone NameB6Ng01-250M21
Chromosome17 (Build37)
Map Location 59,504,510 - 59,623,826
singlet/doubletdoublet
Overlap geneLOC100043537
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
Downstream geneLOC100043542, LOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250M21.bB6Ng01-250M21.g
ACCGA058248GA058249
length1,1331,137
definitionB6Ng01-250M21.b B6Ng01-250M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,622,679 - 59,623,826)(59,504,510 - 59,505,655)
sequence
gaattctataaatggaaacatagattatcttaagagcctgagtaaggatc
tggtgtcatctcagtcatcagatggcacaaagattaaccacctctggtcc
tatttgtaaagattgggagcaagatgggggttggggcttgggaatcgggc
aggaagatgtgacctgatccttcagaaagccctgaggccatcaggcttta
accaactccattcccagcaatctgagtggagaacagttatttatgtcttc
ctttgaagaaataaccctgggtgtttaatcttcctagttttcctacagct
tctctgtgaatacaaagacccctatgacccagacatatacctctttcttt
gtctattttatgtcatggtcttactctgtataccaggttggcagggaacc
cacaataatataactctctcagttcgaagttctggaataatggaaatgca
tcacggcacccagtttggaactaatcatgacagagatagagtctggagtg
aaagaaagaagggctgcagagaaggtataggatattagtctaaatcttaa
ctggggaagtgtctgttccaacatggaaatacttggaataaaatggatca
cattctcatcattagaagtttgccaattctctcagtaagtactactgcaa
aagaaattccacttcctgaaatatatgagtcctaaaacaaagaatatttt
atgaaccaatcacacgattgcagaaagcatactgaaatagattcatcaca
ggagtaacatttctcatgacagtgttagatgttatcagagcacagtgaga
aagaacactgggaggactcagattccacaaaaatgacaggattgccaaac
acaagggtagatctagaaaagcccgcctacatttctatcattgggataag
gaacctttcaaacatgctgaaattgaaatcagtcagttgttccaaatgtg
attataaaacaaacaaaccaaaacaaacaaatagaaaaaaacacccatct
aaaaaagaaaaaaaaaaacccagctttgtacttatgcatttggtatagca
ggaaacatccttgttattttcctgggccctccaatttgaatagatcatat
gaggacagactgatgactgtagattaggatctg

gaattccatgacactagagtgttcaaacttaagaacaacagctaggaagt
cctgggagaccaatccttactcttcatagagtccatttaaataagcaacc
tctttctggagggcaagcaacctcccctttgatgattgtatggcttgtgc
ttaacgtgtgtctcactttagttttgtattcaggagatatttggtaaatg
aatgaacggatgtccaaaaaactttcaagaaattgctggataaccactgg
cctcctatttttgtaaagtcccatgtagtctagtctttaggatgccgtga
gcatctccctcatgggactcatctgaaaaaaacctggcatctggctaagc
acagaacttctaaagccaggctgccttgtcagagtgaggtttacagttag
acaaagagcaatggttctttccctgttagtggctaaatgagagccagggt
ttggagtagggctggggctgctgaggggctctgagagtttccagctgtta
cggaacaggcaggccatttacatgagtgagactaagactactgtgatata
aaagattttagcattttgatgagttaagattacttgaacacttggaaaaa
taaaattgcagatcttttcataaactgttagtaattactaaaaagaaatc
atctccagaaatagaatgttcaaatcagtggttctcaaatctgacatcag
gactcccagtggagagagttagttctggttgaggaatgggatgaaattat
ttgtattgtagttaacattaatcggccctcttccctccctctcctccctt
aaaatataattgtcatcattttattacattttataaagaaaatgtaagtt
tatggatgctgtttgttatagacaaatactccttcatttatatttaagaa
tgtcagtaaatattcagttaaatctttaatggtagatatactgtggattt
tcattttagatatttattgatcacctagtagttttgtttttaagtagcta
gacgcacttcactgttttcttaaggtgaaacacaatctttctattccaaa
tacaatctactttctttctaataagaaaggctccagattcagcctgtctc
atgacctactgtaggatctagattcctcctgtcatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59622679_59623826
seq2: B6Ng01-250M21.b_45_1177 (reverse)

seq1  CAGATCCTAATCTACAGTCATCACAGTCTGTCCTCATATGGATCTATTCA  50
      |||||||||||||||||||||  |||||||||||||||| ||||||||||
seq2  CAGATCCTAATCTACAGTCAT--CAGTCTGTCCTCATAT-GATCTATTCA  47

seq1  ACTCTGAGGGCCATGAAAAAAAAAAAAAAAAAGATGTTTCCTGCTATACC  100
      | |  |||||||      |  |||| || || ||||||||||||||||||
seq2  AATTGGAGGGCC-----CAGGAAAATAACAAGGATGTTTCCTGCTATACC  92

seq1  AAATGCATAGTGACAAAGCTGGGTTTTTTTTTTTTCTTTTTTTGGTTGGT  150
      |||||||||   ||||||||||| |||||||||||||||||| | | |||
seq2  AAATGCATAAGTACAAAGCTGGG-TTTTTTTTTTTCTTTTTTAGATGGGT  141

seq1  TGTTTTTTTTCTATTTGTTTGTTTTTGTTTTGTTTTGTTTTTATAATCAA  200
         |||||||||||||||||| ||||| |||||||   |||||||||| |
seq2  --GTTTTTTTCTATTTGTTTG-TTTTGGTTTGTTT--GTTTTATAATC-A  185

seq1  CATTTGGAACAACCTGACCTGATTTCAATTTCAGCATGTTTGAAAGGTTC  250
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  CATTTGGAACAA-CTGA-CTGATTTCAATTTCAGCATGTTTGAAAGGTTC  233

seq1  CTTATCCCAATGATAGAAATGTAGGCGGGCTTTTCTAGATCTACCC-TGT  299
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTATCCCAATGATAGAAATGTAGGCGGGCTTTTCTAGATCTACCCTTGT  283

seq1  GTTTGGCAATCCTGTCA-TTTTGTGGAATCTGAGTCCTCCCAGTGTTCTT  348
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTTTGGCAATCCTGTCATTTTTGTGGAATCTGAGTCCTCCCAGTGTTCTT  333

seq1  TCTCACTGTGCTCTGATAACATCTAACACTGTCATGAGAAATGTTACTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGTGCTCTGATAACATCTAACACTGTCATGAGAAATGTTACTCC  383

seq1  TGTGATGAATCTATTTCAGTATGCTTTCTGCAATCGTGTGATTGGTTCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGAATCTATTTCAGTATGCTTTCTGCAATCGTGTGATTGGTTCAT  433

seq1  AAAATATTCTTTGTTTTAGGACTCATATATTTCAGGAAGTGGAATTTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTCTTTGTTTTAGGACTCATATATTTCAGGAAGTGGAATTTCTT  483

seq1  TTGCAGTAGTACTTACTGAGAGAATTGGCAAACTTCTAATGATGAGAATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTAGTACTTACTGAGAGAATTGGCAAACTTCTAATGATGAGAATG  533

seq1  TGATCCATTTTATTCCAAGTATTTCCATGTTGGAACAGACACTTCCCCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATTTTATTCCAAGTATTTCCATGTTGGAACAGACACTTCCCCAG  583

seq1  TTAAGATTTAGACTAATATCCTATACCTTCTCTGCAGCCCTTCTTTCTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTTAGACTAATATCCTATACCTTCTCTGCAGCCCTTCTTTCTTT  633

seq1  CACTCCAGACTCTATCTCTGTCATGATTAGTTCCAAACTGGGTGCCGTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGACTCTATCTCTGTCATGATTAGTTCCAAACTGGGTGCCGTGA  683

seq1  TGCATTTCCATTATTCCAGAACTTCGAACTGAGAGAGTTATATTATTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCCATTATTCCAGAACTTCGAACTGAGAGAGTTATATTATTGTG  733

seq1  GGTTCCCTGCCAACCTGGTATACAGAGTAAGACCATGACATAAAATAGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCTGCCAACCTGGTATACAGAGTAAGACCATGACATAAAATAGAC  783

seq1  AAAGAAAGAGGTATATGTCTGGGTCATAGGGGTCTTTGTATTCACAGAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAGGTATATGTCTGGGTCATAGGGGTCTTTGTATTCACAGAGA  833

seq1  AGCTGTAGGAAAACTAGGAAGATTAAACACCCAGGGTTATTTCTTCAAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAGGAAAACTAGGAAGATTAAACACCCAGGGTTATTTCTTCAAAG  883

seq1  GAAGACATAAATAACTGTTCTCCACTCAGATTGCTGGGAATGGAGTTGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATAAATAACTGTTCTCCACTCAGATTGCTGGGAATGGAGTTGGT  933

seq1  TAAAGCCTGATGGCCTCAGGGCTTTCTGAAGGATCAGGTCACATCTTCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCTGATGGCCTCAGGGCTTTCTGAAGGATCAGGTCACATCTTCCT  983

seq1  GCCCGATTCCCAAGCCCCAACCCCCATCTTGCTCCCAATCTTTACAAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGATTCCCAAGCCCCAACCCCCATCTTGCTCCCAATCTTTACAAATA  1033

seq1  GGACCAGAGGTGGTTAATCTTTGTGCCATCTGATGACTGAGATGACACCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGAGGTGGTTAATCTTTGTGCCATCTGATGACTGAGATGACACCA  1083

seq1  GATCCTTACTCAGGCTCTTAAGATAATCTATGTTTCCATTTATAGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTACTCAGGCTCTTAAGATAATCTATGTTTCCATTTATAGAATTC  1133


seq1: chr17_59504510_59505655
seq2: B6Ng01-250M21.g_67_1203

seq1  GAATTCCATGACACTAGAGTGTTCAAACTTAAGAACAACAGCTAGGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACACTAGAGTGTTCAAACTTAAGAACAACAGCTAGGAAGT  50

seq1  CCTGGGAGACCAATCCTTACTCTTCATAGAGTCCATTTAAATAAGCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGACCAATCCTTACTCTTCATAGAGTCCATTTAAATAAGCAACC  100

seq1  TCTTTCTGGAGGGCAAGCAACCTCCCCTTTGATGATTGTATGGCTTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGAGGGCAAGCAACCTCCCCTTTGATGATTGTATGGCTTGTGC  150

seq1  TTAACGTGTGTCTCACTTTAGTTTTGTATTCAGGAGATATTTGGTAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGTGTGTCTCACTTTAGTTTTGTATTCAGGAGATATTTGGTAAATG  200

seq1  AATGAACGGATGTCCAAAAAACTTTCAAGAAATTGCTGGATAACCACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACGGATGTCCAAAAAACTTTCAAGAAATTGCTGGATAACCACTGG  250

seq1  CCTCCTATTTTTGTAAAGTCCCATGTAGTCTAGTCTTTAGGATGCCGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTATTTTTGTAAAGTCCCATGTAGTCTAGTCTTTAGGATGCCGTGA  300

seq1  GCATCTCCCTCATGGGACTCATCTGAAAAAAACCTGGCATCTGGCTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCCCTCATGGGACTCATCTGAAAAAAACCTGGCATCTGGCTAAGC  350

seq1  ACAGAACTTCTAAAGCCAGGCTGCCTTGTCAGAGTGAGGTTTACAGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTTCTAAAGCCAGGCTGCCTTGTCAGAGTGAGGTTTACAGTTAG  400

seq1  ACAAAGAGCAATGGTTCTTTCCCTGTTAGTGGCTAAATGAGAGCCAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGCAATGGTTCTTTCCCTGTTAGTGGCTAAATGAGAGCCAGGGT  450

seq1  TTGGAGTAGGGCTGGGGCTGCTGAGGGGCTCTGAGAGTTTCCAGCTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTAGGGCTGGGGCTGCTGAGGGGCTCTGAGAGTTTCCAGCTGTTA  500

seq1  CGGAACAGGCAGGCCATTTACATGAGTGAGACTAAGACTACTGTGATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACAGGCAGGCCATTTACATGAGTGAGACTAAGACTACTGTGATATA  550

seq1  AAAGATTTTAGCATTTTGATGAGTTAAGATTACTTGAACACTTGGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTAGCATTTTGATGAGTTAAGATTACTTGAACACTTGGAAAAA  600

seq1  TAAAATTGCAGATCTTTTCATAAACTGTTAGTAATTACTAAAAAGAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGCAGATCTTTTCATAAACTGTTAGTAATTACTAAAAAGAAATC  650

seq1  ATCTCCAGAAATAGAATGTTCAAATCAGTGGTTCTCAAATCTGACATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGAAATAGAATGTTCAAATCAGTGGTTCTCAAATCTGACATCAG  700

seq1  GACTCCCAGTGGAGAGAGTTAGTTCTGGTTGAGGAATGGGATGAAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCAGTGGAGAGAGTTAGTTCTGGTTGAGGAATGGGATGAAATTAT  750

seq1  TTGTATTGTAGTTAACATTAATCGGCCCTCTTCCCTCCCTCTCCTCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGTAGTTAACATTAATCGGCCCTCTTCCCTCCCTCTCCTCCCTT  800

seq1  AAAATATAATTGTCATCATTTTATTACATTTTATAAAGAAAATGTAAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAATTGTCATCATTTTATTACATTTTATAAAGAAAATGTAAGTT  850

seq1  TATGGATGCTGTTTGTTATAGACAAATACTCCTTCATTTATATTTAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGCTGTTTGTTATAGACAAATACTCCTTCATTTATATTTAAGAA  900

seq1  TGTCAGTAAAATATTCAGTTAAATCTTTAATGGTAGATATACTGTGGGAT  950
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTCAGT-AAATATTCAGTTAAATCTTTAATGGTAGATATACTGT-GGAT  948

seq1  TTTCATTTTAGATATTTAATTGAATCACCTAGTAGTTTTGTTTTTTAAGT  1000
      ||||||||||||||||| |||| ||||||||||||||||| |||||||||
seq2  TTTCATTTTAGATATTT-ATTG-ATCACCTAGTAGTTTTG-TTTTTAAGT  995

seq1  AGCTAGACGGCAACTTCACTGTTTTC-TAAGGTGAAACACAATCTTTCTA  1049
      |||||||||   |||||||||||||| |||||||||||||||||||||||
seq2  AGCTAGACG--CACTTCACTGTTTTCTTAAGGTGAAACACAATCTTTCTA  1043

seq1  TTCCAAATACAAATTCTTACTCTCTTTCTAATAAGAAAAGGCTCCAGTTT  1099
      ||||||||||||  || |||| ||||||||||||| ||||||||||| ||
seq2  TTCCAAATACAA--TC-TACTTTCTTTCTAATAAG-AAAGGCTCCAGATT  1089

seq1  CAG-CTGTCTCATGACTAAATGTTAAGTCTAGATTCCTCCTGTCATGC  1146
      ||| ||||||||||||  | |||    |||||||||||||||||||||
seq2  CAGCCTGTCTCATGACCTACTGTAGGATCTAGATTCCTCCTGTCATGC  1137


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