BAC Information

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BAC

Clone NameB6Ng01-250N12
Chromosome17 (Build37)
Map Location 63,123,660 - 63,218,299
singlet/doubletdoublet
Overlap geneEfna5
Upstream genenone
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250N12.bB6Ng01-250N12.g
ACCGA058274GA058275
length1,1531,147
definitionB6Ng01-250N12.b B6Ng01-250N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,217,134 - 63,218,299)(63,123,660 - 63,124,820)
sequence
gaattctgctataaattttaaggatatttacacacaaaccttccccgaag
gtactacgaatagcggttccagaatgacacctcaaaacaaaacaaaacaa
aacacttcaaaaaaaaaaaaaaaacccaaacagatttttaacactttgta
atttaactccatgtggtcaaataagcttaaaatgtttattttatattcag
tatagaagatgcgtgctcaacagttctgtttccaatggctgagtttcctg
tgggtggctttcaggaacctatgcttccaggacttgggaaaaagaagaaa
atcttccttctctgaatttctattattccagtgcctttcgtgaggaaact
gttcctgtagagtcagtctgtagctatgttcatatgtcctgtatttcaga
gcaagtagccagtctgcagatacgctcttgtgttctattctttagaacaa
acacctcattttcttctggctcacaagtgtcatgtgatgcttttatgaac
aagccaggagtgggactggttaaatttggttattgtatcttcttttgttt
gttgctttgtacactttcacttgctgtgaatacagtgttaccatcctaag
tgaacctcaagcctctgaaagatgttgctatggaaagataaaacctgcta
taagttaggatcttatgaaaacaaagcagtaggtgagcattccacttagc
tgcacttttacttttaattaattagttgacgttattattgttgttgttga
gacaaagtcttattttgtagctattttgtagctctagctggcctagaact
tactctgtagatcaagttgggcttaaactcacaagagctcagcctgcctc
tgcctcccaagtgctgggattgaaggcgtgcagccctgtcttgctctaat
tttataacagtgtttgccaacactttctgcagttaattataaagcagaag
caatatcctccttgttaaatttcttgatataatgaatttaattaatctgg
gcagcagtttgtagaacaatgagcattattagatatactcgcgtagactg
ttcgtttgtagcgcacggtttatgtttcccatgcaaaacatgaagtgctc
tcgttagaaatgctgaagaggactctcactcttttctaagttgttattct
tct
gaattcactttgtagaccaggctgacctcaaactcagagatcctcctgcc
tctgcctctgcctcctgagtgcaggggtaaaggtgcgtgccaccatgagc
tgccatctagcaaatttgaaagtaaaagaacattcaaatctagtgttacc
gtggtgctgctgttgggtcctaagctcctagaagctagaactgggcttac
agcactgaggtaggcaacaggtgatgaacaactacactatttgtcaatgt
ttctgtgacgaacagaccactggaagaagatgaccacagccaaccaagca
tggtaagtaacattttcttgcaacactcgccgtgcaagaagacggtctct
gccaccatgaaactcttaatctacgacaagaaattaagctggaagggaag
ctccactttctatttattttatatttgggtttgaaaagaatatatcggtg
gatgaccttataaagctgaattattcttagcatccagataatttcttgtg
gtaatgatgggaaattatacccgtaatgtaatatttatgttggaagaacc
agcattaaattatggagtcgactgtttgtgttgtaaaaatgtgaggggaa
gggcctagctctcagtggattcacagaccaacatgaaagcgagtggggtg
aggccgtaatcagccgctggcttttgcaagcctccagatgaaggcatgag
gcagatgcaaatgttttcttaaagccatacctaactctgagaaaacagac
ttcaacttctcttgaaacagcgagggtcaattaacagttcattctcttta
ttgatcagacttttaagaaagaattgttcttggccttgataattttgaat
acttctatactctcaggctgctcctatccctattcatatcaagcttgact
tcctcaagcaccaggcttcttcttccctttcctgggtgtgtctcctgcag
ccttgtgcttccttcttatggtcagatgttttctctcccagcactgggac
acgactctcccttctttgttggaagccttcgggcaggatgctcacagccc
tctactgctatcttgctgggagttatgtgctgagagaccctcgtatgaaa
ggcagtgtggggagcaagaatgacctggctccatccagctcagtcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63217134_63218299
seq2: B6Ng01-250N12.b_48_1200 (reverse)

seq1  AGAAGAATTACAAACTCTAG-AAAGAGTGAGAGTTCCTC-TCAGCATTTC  48
      |||||||| || |||| ||| |||||||||||| ||||| ||||||||||
seq2  AGAAGAATAAC-AACT-TAGAAAAGAGTGAGAG-TCCTCTTCAGCATTTC  47

seq1  TATTGAGAACCACCCTCATGTATGCCATGGGAAACATAAA-CGTGCGCTT  97
      ||  |||| |   | |||||| |  ||||||||||||||| ||||||| |
seq2  TAACGAGAGC--ACTTCATGTTTTGCATGGGAAACATAAACCGTGCGC-T  94

seq1  ACAAACGAACAGTCCTACGCCGAGTTATTATTCTTAATAATGCTCATTGT  147
      ||||||||||||| ||||| ||||    |||   ||||||||||||||||
seq2  ACAAACGAACAGT-CTACG-CGAG----TATATCTAATAATGCTCATTGT  138

seq1  TCTTACAAACTGCTGCCCAGAATTTTAATTAAATTCATTATATCAAG-AA  196
      || ||||||||||||||||||   ||||||||||||||||||||||| ||
seq2  TC-TACAAACTGCTGCCCAGA---TTAATTAAATTCATTATATCAAGAAA  184

seq1  TTTAACAAGGAGGATATTTGCTTCTGCTTTATAATTAACTGCAGAAAGTG  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTAACAAGGAGGATA-TTGCTTCTGCTTTATAATTAACTGCAGAAAGTG  233

seq1  TTGGCAAACACTGTTATAAAATTAGAGCAAGACAGGGCTGCACGCCTTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAACACTGTTATAAAATTAGAGCAAGACAGGGCTGCACGCCTTCA  283

seq1  ATCCCAGCACTTGGGAGGCAGAGGCAGGCTGAGCTCTTGTGAGTTTAAGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTTGGGAGGCAGAGGCAGGCTGAGCTCTTGTGAGTTTAAGC  333

seq1  CCAACTTGATCTACAGAGTAAGTTCTAGGCCAGCTAGAGCTACAAAATAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGATCTACAGAGTAAGTTCTAGGCCAGCTAGAGCTACAAAATAG  383

seq1  CTACAAAATAAGACTTTGTCTCAACAACAACAATAATAACGTCAACTAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAATAAGACTTTGTCTCAACAACAACAATAATAACGTCAACTAAT  433

seq1  TAATTAAAAGTAAAAGTGCAGCTAAGTGGAATGCTCACCTACTGCTTTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAGTAAAAGTGCAGCTAAGTGGAATGCTCACCTACTGCTTTGT  483

seq1  TTTCATAAGATCCTAACTTATAGCAGGTTTTATCTTTCCATAGCAACATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAGATCCTAACTTATAGCAGGTTTTATCTTTCCATAGCAACATC  533

seq1  TTTCAGAGGCTTGAGGTTCACTTAGGATGGTAACACTGTATTCACAGCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGGCTTGAGGTTCACTTAGGATGGTAACACTGTATTCACAGCAA  583

seq1  GTGAAAGTGTACAAAGCAACAAACAAAAGAAGATACAATAACCAAATTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTGTACAAAGCAACAAACAAAAGAAGATACAATAACCAAATTTA  633

seq1  ACCAGTCCCACTCCTGGCTTGTTCATAAAAGCATCACATGACACTTGTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCCCACTCCTGGCTTGTTCATAAAAGCATCACATGACACTTGTGA  683

seq1  GCCAGAAGAAAATGAGGTGTTTGTTCTAAAGAATAGAACACAAGAGCGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGAAAATGAGGTGTTTGTTCTAAAGAATAGAACACAAGAGCGTA  733

seq1  TCTGCAGACTGGCTACTTGCTCTGAAATACAGGACATATGAACATAGCTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGACTGGCTACTTGCTCTGAAATACAGGACATATGAACATAGCTA  783

seq1  CAGACTGACTCTACAGGAACAGTTTCCTCACGAAAGGCACTGGAATAATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGACTCTACAGGAACAGTTTCCTCACGAAAGGCACTGGAATAATA  833

seq1  GAAATTCAGAGAAGGAAGATTTTCTTCTTTTTCCCAAGTCCTGGAAGCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCAGAGAAGGAAGATTTTCTTCTTTTTCCCAAGTCCTGGAAGCAT  883

seq1  AGGTTCCTGAAAGCCACCCACAGGAAACTCAGCCATTGGAAACAGAACTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTGAAAGCCACCCACAGGAAACTCAGCCATTGGAAACAGAACTG  933

seq1  TTGAGCACGCATCTTCTATACTGAATATAAAATAAACATTTTAAGCTTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCACGCATCTTCTATACTGAATATAAAATAAACATTTTAAGCTTAT  983

seq1  TTGACCACATGGAGTTAAATTACAAAGTGTTAAAAATCTGTTTGGGTTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCACATGGAGTTAAATTACAAAGTGTTAAAAATCTGTTTGGGTTTT  1033

seq1  TTTTTTTTTTTTGAAGTGTTTTGTTTTGTTTTGTTTTGAGGTGTCATTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGAAGTGTTTTGTTTTGTTTTGTTTTGAGGTGTCATTCT  1083

seq1  GGAACCGCTATTCGTAGTACCTTCGGGGAAGGTTTGTGTGTAAATATCCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCGCTATTCGTAGTACCTTCGGGGAAGGTTTGTGTGTAAATATCCT  1133

seq1  TAAAATTTATAGCAGAATTC  1166
      ||||||||||||||||||||
seq2  TAAAATTTATAGCAGAATTC  1153

seq1: chr17_63123660_63124820
seq2: B6Ng01-250N12.g_68_1214

seq1  GAATTCACTTTGTAGACCAGGCTGACCTCAAACTCAGAGATCCTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGACCTCAAACTCAGAGATCCTCCTGCC  50

seq1  TCTGCCTCTGCCTCCTGAGTGCAGGGGTAAAGGTGCGTGCCACCATGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGCCTCCTGAGTGCAGGGGTAAAGGTGCGTGCCACCATGAGC  100

seq1  TGCCATCTAGCAAATTTGAAAGTAAAAGAACATTCAAATCTAGTGTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCTAGCAAATTTGAAAGTAAAAGAACATTCAAATCTAGTGTTACC  150

seq1  GTGGTGCTGCTGTTGGGTCCTAAGCTCCTAGAAGCTAGAACTGGGCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTGCTGTTGGGTCCTAAGCTCCTAGAAGCTAGAACTGGGCTTAC  200

seq1  AGCACTGAGGTAGGCAACAGGTGATGAACAACTACACTATTTGTCAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGGTAGGCAACAGGTGATGAACAACTACACTATTTGTCAATGT  250

seq1  TTCTGTGACGAACAGACCACTGGAAGAAGATGACCACAGCCAACCAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGACGAACAGACCACTGGAAGAAGATGACCACAGCCAACCAAGCA  300

seq1  TGGTAAGTAACATTTTCTTGCAACACTCGCCGTGCAAGAAGACGGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTAACATTTTCTTGCAACACTCGCCGTGCAAGAAGACGGTCTCT  350

seq1  GCCACCATGAAACTCTTAATCTACGACAAGAAATTAAGCTGGAAGGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGAAACTCTTAATCTACGACAAGAAATTAAGCTGGAAGGGAAG  400

seq1  CTCCACTTTCTATTTATTTTATATTTGGGTTTGAAAAGAATATATCGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTTCTATTTATTTTATATTTGGGTTTGAAAAGAATATATCGGTG  450

seq1  GATGACCTTATAAAGCTGAATTATTCTTAGCATCCAGATAATTTCTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCTTATAAAGCTGAATTATTCTTAGCATCCAGATAATTTCTTGTG  500

seq1  GTAATGATGGGAAATTATACCCGTAATGTAATATTTATGTTGGAAGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGATGGGAAATTATACCCGTAATGTAATATTTATGTTGGAAGAACC  550

seq1  AGCATTAAATTATGGAGTCGACTGTTTGTGTTGTAAAAATGTGAGGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAAATTATGGAGTCGACTGTTTGTGTTGTAAAAATGTGAGGGGAA  600

seq1  GGGCCTAGCTCTCAGTGGATTCACAGACCAACATGAAAGCGAGTGGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTAGCTCTCAGTGGATTCACAGACCAACATGAAAGCGAGTGGGGTG  650

seq1  AGGCCGTAATCAGCCGCTGGCTTTTGCAAGCCTCCAGATGAAGGCATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTAATCAGCCGCTGGCTTTTGCAAGCCTCCAGATGAAGGCATGAG  700

seq1  GCAGATGCAAATGTTTTCTTAAAGCCATACCTAACTCTGAGAAAACAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCAAATGTTTTCTTAAAGCCATACCTAACTCTGAGAAAACAGAC  750

seq1  TTCAACTTCTCTTGAAACAGCGAGGGTCAATTAACAGTTCATTCTCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTTCTCTTGAAACAGCGAGGGTCAATTAACAGTTCATTCTCTTTA  800

seq1  TTGATCAGACTTTTAAGAAAGAATTGTTCTTGGCCTTGATAATTTTGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAGACTTTTAAGAAAGAATTGTTCTTGGCCTTGATAATTTTGAAT  850

seq1  ACTTCTATACTCTCAGGCTGCTCCTATCCCTATTCAATATCAAGCTTGAC  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTTCTATACTCTCAGGCTGCTCCTATCCCTATTC-ATATCAAGCTTGAC  899

seq1  TTCCTCAAGCACCAGGCTTCTTCTTCCCTTTCCTGGGTGTTGTCTCCTGC  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCCTCAAGCACCAGGCTTCTTCTTCCCTTTCCTGGGTG-TGTCTCCTGC  948

seq1  AGCCTTGTGC-TCCTTCTTATGGTCAGATGTTTTCTCTCCCAAGCACT-G  998
      |||||||||| |||||||||||||||||||||||||||||| |||||| |
seq2  AGCCTTGTGCTTCCTTCTTATGGTCAGATGTTTTCTCTCCC-AGCACTGG  997

seq1  GACACGACTCTCCCTTCTTTGTTGGAAGCCTTCGGGCAGGATGCTCACAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGACTCTCCCTTCTTTGTTGGAAGCCTTCGGGCAGGATGCTCACAG  1047

seq1  CCCTCTTACTTGCTATCTTTGCT-GGAGTTAATGTTGCTGAGAGGAACCC  1097
      ||||| ||| ||||||| ||||| |||||| ||| |||||||||  ||||
seq2  CCCTC-TAC-TGCTATC-TTGCTGGGAGTT-ATG-TGCTGAGAG--ACCC  1090

seq1  TCGTAATGAAAAGCAGTGTGGGGAGCAAAGAATTGACTTGGCTTTCACAT  1147
      |||| |||||| |||||||||||||| ||||| |||| |||||    |||
seq2  TCGT-ATGAAAGGCAGTGTGGGGAGC-AAGAA-TGACCTGGCT---CCAT  1134

seq1  CCCAGCTCAGTCCA  1161
       |||||||||||||
seq2  -CCAGCTCAGTCCA  1147