BAC Information

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BAC

Clone NameB6Ng01-251C13
Chromosome17 (Build37)
Map Location 23,079,263 - 23,080,414
singlet/doubletsinglet
Overlap geneEG434701
Upstream gene3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961
Downstream geneLOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251C13.bB6Ng01-251C13.g
ACCGA058503GA058504
length1,156818
definitionB6Ng01-251C13.b B6Ng01-251C13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctcagtgaatactggatgtaaaattagcaaagtcagtgtgaa
actcaataataaagtagaagaaactggtcaaaacaaggcattgatctgtg
agaactgagggtcagatttggaaatcatgttttagaactcaaatattcag
cttagtttctcactcataattatggggagtaggagtgctaggtctatttg
aaatgaggcacaaagttctaacattctctctggattttcttaaatatttt
aaaagcaacatttaatatgtaagtaaaatgtggttttgtgatgatttttg
tacactgcaggattcaggacatttcaggatttgtcatgattttgtacctg
tccctgctgtagcactgtccatactacattctcagtggacgtcaaatgct
ctaaacttgagactgcttttcaccgacatgggacttgtgacacaatggtc
agtgtgtaatcatgacctcagacttcacgagtccttcccgaaggtggagc
aactaacaaaatctgttggcattattgcaagtgttcacataaacagattt
tgaggcagttctgggaccaaattttcacaaagtggaatctttccagggac
ctcaatttccacaaacatgagtgatatcattcatcaccctcatctatatt
tatcagccaggtttatcacatgcatggagaacatcagatgaagatcctca
ggagatagtgtcaaagattcctccaggggtgaggaaacagctgtgaaaaa
tgaaacaaaatacagatgtagcatctcccttggacacagtgataaaatag
tacatgggcatatattagtacctgtttggtttgctgatctgtgtggcact
tcacaaaccattctgcccagcctcagagaaggaaaaatatgttcactttg
attttactcttcttgctgctaaacattccacttattgtggctgatttcat
tgatcccaggtgcttttggagataaacagaataaagacgaggatggaaac
ctgggatcagttgtagcttctttattcagcagtacaatgggcctgtggag
aaagaagtattttcagttctattttgaataccacaggtaagtgctttttg
tattttcatgtaaatgtgaccatgaaatatttctggaatctactggaggg
ttgagg
gaattctcaggtaatagaaacttccagaaatctatgaggatgaccctggc
taagtctcctagcaaagcacagtatggagcctttaatggtcatttccaat
aacccgctaagatgtccactgttggaattgagacaacatctaaccacaaa
acctccaatctacaatttaccctgcataaagatgtgtgggagaaaagatg
tagcagatcaggggctagttaaccagtgactggatcaactagagaacctt
gccatgagagaaagccctctgctcatgctggtaataatatttttgttata
tttgcaggcgagagcctagagtaaccatcatcagacagaattcacccaac
aattgataaaaacacatgcaaagatcaacacacaaacaaaaggcaaagtt
tggggaatcctgggtaagaggggaaagaaggattgtgggagtcagaggaa
tcaaaaacacaagaaaacctacataaaaattaccaggagccctaagggct
cacagagactgaaccacttgctacaaatgatgcatgagactaacctagtt
actccaaatatatgtaacatttgtgaagcttggccattacatgggacacc
taaaagcagtattcaaaagcagtctgactctgttgcctgtctttgtgaaa
ctttacccctgctgggctgcctcccctaggcctgattaggagaacatgaa
actgtgcctatttattgtacaccatgatatgtcaaagcatgttgatatgc
gtgcggggggggtccccttttctgaagaaaggagtagtggataggaagga
ggggaaagatggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23079263_23080414
seq2: B6Ng01-251C13.b_43_1198

seq1  GAATTCTTCTCAGTGAATACTGGATGTAAAATTAGCAAAGTCAGTGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCAGTGAATACTGGATGTAAAATTAGCAAAGTCAGTGTGAA  50

seq1  ACTCAATAATAAAGTAGAAGAAACTGGTCAAAACAAGGCATTGATCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATAATAAAGTAGAAGAAACTGGTCAAAACAAGGCATTGATCTGTG  100

seq1  AGAACTGAGGGTCAGATTTGGAAATCATGTTTTAGAACTCAAATATTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAGGGTCAGATTTGGAAATCATGTTTTAGAACTCAAATATTCAG  150

seq1  CTTAGTTTCTCACTCATAATTATGGGGAGTAGGAGTGCTAGGTCTATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTCTCACTCATAATTATGGGGAGTAGGAGTGCTAGGTCTATTTG  200

seq1  AAATGAGGCACAAAGTTCTAACATTCTCTCTGGATTTTCTTAAATATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGCACAAAGTTCTAACATTCTCTCTGGATTTTCTTAAATATTTT  250

seq1  AAAAGCAACATTTAATATGTAAGTAAAATGTGGTTTTGTGATGATTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAACATTTAATATGTAAGTAAAATGTGGTTTTGTGATGATTTTTG  300

seq1  TACACTGCAGGATTCAGGACATTTCAGGATTTGTCATGATTTTGTACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGCAGGATTCAGGACATTTCAGGATTTGTCATGATTTTGTACCTG  350

seq1  TCCCTGCTGTAGCACTGTCCATACTACATTCTCAGTGGACGTCAAATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTGTAGCACTGTCCATACTACATTCTCAGTGGACGTCAAATGCT  400

seq1  CTAAACTTGAGACTGCTTTTCACCGACATGGGACTTGTGACACAATGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTGAGACTGCTTTTCACCGACATGGGACTTGTGACACAATGGTC  450

seq1  AGTGTGTAATCATGACCTCAGACTTCACGAGTCCTTCCCGAAGGTGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTAATCATGACCTCAGACTTCACGAGTCCTTCCCGAAGGTGGAGC  500

seq1  AACTAACAAAATCTGTTGGCATTATTGCAAGTGTTCACATAAACAGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACAAAATCTGTTGGCATTATTGCAAGTGTTCACATAAACAGATTT  550

seq1  TGAGGCAGTTCTGGGACCAAATTTTCACAAAGTGGAATCTTTCCAGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGTTCTGGGACCAAATTTTCACAAAGTGGAATCTTTCCAGGGAC  600

seq1  CTCAATTTCCACAAACATGAGTGATATCATTCATCACCCTCATCTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTCCACAAACATGAGTGATATCATTCATCACCCTCATCTATATT  650

seq1  TATCAGCCAGGTTTATCACATGCATGGAGAACATCAGATGAAGATCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCCAGGTTTATCACATGCATGGAGAACATCAGATGAAGATCCTCA  700

seq1  GGAGATAGTGTCAAAGATTCCTCCAGGGGTGAGGAAACAGCTGTGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAGTGTCAAAGATTCCTCCAGGGGTGAGGAAACAGCTGTGAAAAA  750

seq1  TGAAACAAAATACAGATGTAGCATCTCCCTTGGACACAGTGATAAAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAAAATACAGATGTAGCATCTCCCTTGGACACAGTGATAAAATAG  800

seq1  TACATGGGCATATATTAGTACCTGTTTGGTTTGCTGATCTGTGTGGCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGGCATATATTAGTACCTGTTTGGTTTGCTGATCTGTGTGGCACT  850

seq1  TCACAAACCATTCTGCCCAGCCTCAGAGAAGGAAAAATATGTTCACTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACCATTCTGCCCAGCCTCAGAGAAGGAAAAATATGTTCACTTTG  900

seq1  ATTTTACTCTTCTTGCTGCTAAACATTCCACTTATTGTGGCTGATTTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTCTTCTTGCTGCTAAACATTCCACTTATTGTGGCTGATTTCAT  950

seq1  TGATCCCAGGTGCTTTTGGAGAATAAAACAGAATAAAGACGAGGATGGAA  1000
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  TGATCCCAGGTGCTTTTGGAGA--TAAACAGAATAAAGACGAGGATGGAA  998

seq1  ACCTGGGATCAGGTTGTAGCTTCTTTATTCAAGCAGTACAAT-GGCCTGT  1049
      ||||||||||| |||||||||||||||||| ||||||||||| |||||||
seq2  ACCTGGGATCA-GTTGTAGCTTCTTTATTC-AGCAGTACAATGGGCCTGT  1046

seq1  GGAGAAAG-AGTA-TTTCAGTTCTATTTTGAATA-CACA-GTAAGTGC-T  1094
      |||||||| |||| |||||||||||||||||||| |||| |||||||| |
seq2  GGAGAAAGAAGTATTTTCAGTTCTATTTTGAATACCACAGGTAAGTGCTT  1096

seq1  TTTGTATTTTCCATGTAAATGTGACCATG-AATATTTCCTGAGTCTACTG  1143
      |||||||||| |||||||||||||||||| ||||||||  || |||||||
seq2  TTTGTATTTT-CATGTAAATGTGACCATGAAATATTTCTGGAATCTACTG  1145

seq1  --AGGTTGAGG  1152
         ||||||||
seq2  GAGGGTTGAGG  1156