BAC Information

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BAC

Clone NameB6Ng01-251E02
Chromosome17 (Build37)
Map Location 79,058,833 - 79,229,366
singlet/doubletdoublet
Overlap geneStrn, Heatr5b
Upstream geneLOC100043887, LOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit
Downstream gene2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251E02.bB6Ng01-251E02.g
ACCGA058567GA058568
length8121,151
definitionB6Ng01-251E02.b B6Ng01-251E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,228,556 - 79,229,366)(79,058,833 - 79,059,511)
sequence
gaattcttttgtcctgtcagtttcactatagtttctatgtcaacttcaga
tgaatggtatgtagagtaagctcaagactcagatataattcttggggggc
acttggaactaaatttagggtgtagcacacattcattcactgagccatgc
ccccagcgtgcaacctcagttttctgttcagaagaactgacttctcagat
gatattaatatttatccttacatttcagagccttcgtagaattcttgatt
cagggcttctccgtagtctctctgtttggagataagctagttaggttgga
gaattgtacctctgtatgttcttattaattgtgacattggtttgacaaca
tggtcctaaagctttgctttgtggtcacgtgcagtctcaagggcgaagtg
agatcttaatgagtctgcagaaagtgctgactggactgggcggcgcagca
gcttcctctcaccgcgacatttacaagaatgctcgatccctcctgaccga
caggtcgatggctgtccgatgtgcagtggccaaggttagtacccagccag
tgtgtaacattgtcccttatggcatttgctctgaaatagctaattttctc
ttaaattacgagcttttttggtttgtttgcgcacgttagttgcattttct
agaattatacagatggcagcgtgtggcacggacttctgagtggatgtgtg
gcttctttcttgaagtacagctgttttgagatttatgttcatgtgtcaga
agctcacaccttcctgtttgtgtagtcccgcgtggttgtgtggatgtgtg
gaagtgtggatg
gaattccacataaaaccagagacactgaaacttacagaggagaaagtggg
gaagagccttgaagatatgggcacaggggaaagattcctgaacagaatag
caatggcttgtgctgtaagatcaagaatcgacaaatgggacctcataaaa
ctgcaaagcttctgtaaggcaaaggacatcgtcaataagacaaaacggca
atcaacaaacagattgtgaaaagatctttacctatcctatatccgatagg
gggctaatatccaatatacacaaaaaactcaagaagttggactccaggaa
accaaataatcctattaaaaatggagtactgggctaaacaaagaattctc
aactgaggaataccgaagggctgagaagcacctaaaaaaatgttcaacat
ccttaatcatcagggaaacgcaaatcaaaacaaccctgagatcccacctc
acacctgtcagaatggctaagatcaaaaattcagatgacagcagtactgg
cgtggatgtggagaaagaggaacactcctccattgctggtgggattgcaa
gcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattgg
acacagttctactggaagatccaccaataccactcctgggcatataccca
gaagatgctccaacttgtaataaggacacatgctccactatgttcatagc
agccttatttataatagccagaagctggaaagaacccagatgtcactcaa
cagaggaatggatacagaaaatgtggtacatttatacaatggagtactat
gcagccattaaaaagaatgaattttatgaaattcttaggcaaatggatgg
acctgaagggtatcatcctgagtgaggaaacccaatcacaaaggaactcg
cacaatatgtactcactgataagtggatattagcccagaaatcattgttt
tgtttgcttttttagagtaggatgttcagacctgggaacttttcactctg
aaggagcgtaccttgggttatcattaaatacactcagtgcctggagcaaa
ccttcagtttgatattccaattaggcgtagagtgccgtcttgctggagca
aggaaagcaagcgactgggtgggccgcactgtaagccagtcccataccgc
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_79228556_79229366
seq2: B6Ng01-251E02.b_43_854 (reverse)

seq1  CATCCACACTTCCACACATCCACACAACCACGCGGGACTACAC-AACAGG  49
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATCCACACTTCCACACATCCACACAACCACGCGGGACTACACAAACAGG  50

seq1  AAGGTGTGAGCTTCTGACACATGAACATAAATCTCAAAACAGCTGTACTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTGAGCTTCTGACACATGAACATAAATCTCAAAACAGCTGTACTT  100

seq1  CAAGAAAGAAGCCACACATCCACTCAGAAGTCCGTGCCACACGCTGCCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAAGCCACACATCCACTCAGAAGTCCGTGCCACACGCTGCCAT  150

seq1  CTGTATAATTCTAGAAAATGCAACTAACGTGCGCAAACAAACCAAAAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAATTCTAGAAAATGCAACTAACGTGCGCAAACAAACCAAAAAAG  200

seq1  CTCGTAATTTAAGAGAAAATTAGCTATTTCAGAGCAAATGCCATAAGGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTAATTTAAGAGAAAATTAGCTATTTCAGAGCAAATGCCATAAGGGA  250

seq1  CAATGTTACACACTGGCTGGGTACTAACCTTGGCCACTGCACATCGGACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTACACACTGGCTGGGTACTAACCTTGGCCACTGCACATCGGACA  300

seq1  GCCATCGACCTGTCGGTCAGGAGGGATCGAGCATTCTTGTAAATGTCGCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCGACCTGTCGGTCAGGAGGGATCGAGCATTCTTGTAAATGTCGCG  350

seq1  GTGAGAGGAAGCTGCTGCGCCGCCCAGTCCAGTCAGCACTTTCTGCAGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGAAGCTGCTGCGCCGCCCAGTCCAGTCAGCACTTTCTGCAGAC  400

seq1  TCATTAAGATCTCACTTCGCCCTTGAGACTGCACGTGACCACAAAGCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAGATCTCACTTCGCCCTTGAGACTGCACGTGACCACAAAGCAAA  450

seq1  GCTTTAGGACCATGTTGTCAAACCAATGTCACAATTAATAAGAACATACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGGACCATGTTGTCAAACCAATGTCACAATTAATAAGAACATACA  500

seq1  GAGGTACAATTCTCCAACCTAACTAGCTTATCTCCAAACAGAGAGACTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACAATTCTCCAACCTAACTAGCTTATCTCCAAACAGAGAGACTAC  550

seq1  GGAGAAGCCCTGAATCAAGAATTCTACGAAGGCTCTGAAATGTAAGGATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCCCTGAATCAAGAATTCTACGAAGGCTCTGAAATGTAAGGATA  600

seq1  AATATTAATATCATCTGAGAAGTCAGTTCTTCTGAACAGAAAACTGAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAATATCATCTGAGAAGTCAGTTCTTCTGAACAGAAAACTGAGGT  650

seq1  TGCACGCTGGGGGCATGGCTCAGTGAATGAATGTGTGCTACACCCTAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCTGGGGGCATGGCTCAGTGAATGAATGTGTGCTACACCCTAAAT  700

seq1  TTAGTTCCAAGTGCCCCCCAAGAATTATATCTGAGTCTTGAGCTTACTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCCAAGTGCCCCCCAAGAATTATATCTGAGTCTTGAGCTTACTCT  750

seq1  ACATACCATTCATCTGAAGTTGACATAGAAACTATAGTGAAACTGACAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCATTCATCTGAAGTTGACATAGAAACTATAGTGAAACTGACAGG  800

seq1  ACAAAAGAATTC  811
      ||||||||||||
seq2  ACAAAAGAATTC  812

seq1: chr17_79058833_79059511
seq2: B6Ng01-251E02.g_523_1216

seq1  TCAGAATGGCTAAGATCAAAAATTCAGATGACAGCAGTACTGGCGTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGGCTAAGATCAAAAATTCAGATGACAGCAGTACTGGCGTGGAT  50

seq1  GTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTA  100

seq1  CAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACACAGT  150

seq1  TCTACTGGAAGATCCACCAATACCACTCCTGGGCATATACCCAGAAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGGAAGATCCACCAATACCACTCCTGGGCATATACCCAGAAGATG  200

seq1  CTCCAACTTGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTTGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTA  250

seq1  TTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCACTCAACAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCACTCAACAGAGGA  300

seq1  ATGGATACAGAAAATGTGGTACATTTATACAATGGAGTACTATGCAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACAGAAAATGTGGTACATTTATACAATGGAGTACTATGCAGCCA  350

seq1  TTAAAAAGAATGAA-TTTATGAAATTCTTAGGCAAATGGATGGACCTGAA  399
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGAATGAATTTTATGAAATTCTTAGGCAAATGGATGGACCTGAA  400

seq1  GGGTATCATCCTGAGTGAGGAAACCCAATCACAAAGGAACTCGCACAATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCATCCTGAGTGAGGAAACCCAATCACAAAGGAACTCGCACAATA  450

seq1  TGTACTCACTGATAAGTGGATATTAGCCCAG-AATCATTGTTTTGTTTGC  498
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTACTCACTGATAAGTGGATATTAGCCCAGAAATCATTGTTTTGTTTGC  500

seq1  TTTTTTAGAGTAGGATGTTCAGACCT-GGAACTTTTCACTCTGAAGGAGC  547
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTTTAGAGTAGGATGTTCAGACCTGGGAACTTTTCACTCTGAAGGAGC  550

seq1  GTACCTT-GGTTATCATTAAATACACTCAGTG-CTGGAGCAA--CCTCAG  593
      ||||||| |||||||||||||||||||||||| |||||||||  | ||||
seq2  GTACCTTGGGTTATCATTAAATACACTCAGTGCCTGGAGCAAACCTTCAG  600

seq1  TT--GTATTCCA--TAAGCGAAGAGTGCCGTC-TGCT-GAGC-AGGAGAG  636
      ||   |||||||  || ||| ||||||||||| |||| |||| |||| ||
seq2  TTTGATATTCCAATTAGGCGTAGAGTGCCGTCTTGCTGGAGCAAGGAAAG  650

seq1  CAAGCG-CT-GGTGTGCCGCACTGTAGGCCAGCCCCCATACCGCG  679
      |||||| || |||| ||||||||||| |||||  |||||||||||
seq2  CAAGCGACTGGGTGGGCCGCACTGTAAGCCAG-TCCCATACCGCG  694