BAC Information

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BAC

Clone NameB6Ng01-251H20
Chromosome17 (Build37)
Map Location 19,717,071 - 19,863,877
singlet/doubletdoublet
Overlap geneEG627576, EG224572, EG627618
Upstream geneEG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537
Downstream geneEG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251H20.bB6Ng01-251H20.g
ACCGA058738GA058739
length997771
definitionB6Ng01-251H20.b B6Ng01-251H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,717,071 - 19,717,781)(19,863,109 - 19,863,877)
sequence
gaattcaaccttggattctctggaaaaatgacacccttaattcctcagaa
agtacttctctccaccataaatttttccctgaaaaccttaataatgataa
tatatttaaacttttaaaaaattcagttcattgatcatattttccagagc
tcccagatagttcagtacccaccatttctttccatatctatcatgcctaa
taccaagttttgactggatctattataggacaagcttataacttgcaagt
gatcttcttgaaatgactttgctttagattaaatgtatgatgaagctcca
atagtcaaggattaggaataaatcattttagggaagattcctgctgtaaa
tatctttttactgttactattaaacatacataataatcggtaggtatttg
ctcaattatttgagcagatctctgtagatccaggaagatgtactctcttg
tagtaatgctatatagaaaaatggatgacttcttaattcttaatgatgat
cctctaagaattcataaaattaaatctgtttattaagctttttcacagtt
ggacatctattagatccttttcagatagtcataactaaaatgagaactct
gctaatgtcccatgtatcaccagttaatttctgctagagagtgaacagac
tttgtaatattcagagtatattccaagaagttttaaaacaaatcaacaag
gtcataaaaagggaactgtggtttattataggtgaaggagtgaagataaa
ccattgactgaatttatcaatagcagatttactagttacttggttatgtt
ttttaactttcaatgaacctgtggagctatgacaggtgatggatgtttag
gcagataattactcctaatggatacacatgtagatattctcttctgtaaa
ctgctattttaatttatgatttgatttatgtgtgaacttgtgatgaacat
ttttcatatatgatcaattattctgaaagatgtataagtgctgatga
gaattcttttataaatacaagtatcatgcacgttactttccctcagtttt
ttctaacaactccttctgctctctatctctaacttttacatatttattgt
catttgtttttcattcagtagagccaatgtatgtgtaactgggaatggct
tcagtgggaaaataggtagaatttcaagccctaccattttaaagaacaga
actgtagcttttcagctactcaacaactttcaataaattccttaaaaata
ttttttactaccatttaaattttaatacatatgccttttttctctttata
cacaacatttttctgcctttactaacattggtgtaactcttttgaaagta
actatagtactaagttacatggcaaaaacctactgttgccttgatagtac
tcataattcacaaatgtttcttaacttacacatggaaaatctagactaga
aaaaaaattttttttgcaaaatttctcaggtaatgctctcttatacatga
atactaaatttactttcctgtttaaaattccttatatggaggagctagag
aaattacccaaggagctaaagggaactgcaaccctataggtggaacaaca
atatgaactaaccagtacccgggagctcttgtctttagctgcatatgtat
caaaagatgacctagtcggccatcactgcaaagagaggcccattggactt
gcaaactttatatgccccagtacaggggaacgccagggccaaaaaggggg
agtggggtggggtaggggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19717071_19717781
seq2: B6Ng01-251H20.b_43_753

seq1  GAATTCAACCTTGGATTCTCTGGAAAAATGACACCCTTAATTCCTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTTGGATTCTCTGGAAAAATGACACCCTTAATTCCTCAGAA  50

seq1  AGTACTTCTCTCCACCATAAATTTTTCCCTGAAAACCTTAATAATGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTCTCTCCACCATAAATTTTTCCCTGAAAACCTTAATAATGATAA  100

seq1  TATATTTAAACTTTTAAAAAATTCAGTTCATTGATCATATTTTCCAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAAACTTTTAAAAAATTCAGTTCATTGATCATATTTTCCAGAGC  150

seq1  TCCCAGATAGTTCAGTACCCACCATTTCTTTCCATATCTATCATGCCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATAGTTCAGTACCCACCATTTCTTTCCATATCTATCATGCCTAA  200

seq1  TACCAAGTTTTGACTGGATCTATTATAGGACAAGCTTATAACTTGCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGTTTTGACTGGATCTATTATAGGACAAGCTTATAACTTGCAAGT  250

seq1  GATCTTCTTGAAATGACTTTGCTTTAGATTAAATGTATGATGAAGCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTTGAAATGACTTTGCTTTAGATTAAATGTATGATGAAGCTCCA  300

seq1  ATAGTCAAGGATTAGGAATAAATCATTTTAGGGAAGATTCCTGCTGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAAGGATTAGGAATAAATCATTTTAGGGAAGATTCCTGCTGTAAA  350

seq1  TATCTTTTTACTGTTACTATTAAACATACATAATAATCGGTAGGTATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTACTGTTACTATTAAACATACATAATAATCGGTAGGTATTTG  400

seq1  CTCAATTATTTGAGCAGATCTCTGTAGATCCAGGAAGATGTACTCTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTATTTGAGCAGATCTCTGTAGATCCAGGAAGATGTACTCTCTTG  450

seq1  TAGTAATGCTATATAGAAAAATGGATGACTTCTTAATTCTTAATGATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGCTATATAGAAAAATGGATGACTTCTTAATTCTTAATGATGAT  500

seq1  CCTCTAAGAATTCATAAAATTAAATCTGTTTATTAAGCTTTTTCACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAGAATTCATAAAATTAAATCTGTTTATTAAGCTTTTTCACAGTT  550

seq1  GGACATCTATTAGATCCTTTTCAGATAGTCATAACTAAAATGAGAACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTATTAGATCCTTTTCAGATAGTCATAACTAAAATGAGAACTCT  600

seq1  GCTAATGTCCCATGTATCACCAGTTAATTTCTGCTAGAGAGTGAACAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGTCCCATGTATCACCAGTTAATTTCTGCTAGAGAGTGAACAGAC  650

seq1  TTTGTAATATTCAGAGTATATTCCAAGAAGTTTTAAAACAAATCAACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATATTCAGAGTATATTCCAAGAAGTTTTAAAACAAATCAACAAG  700

seq1  GTCATAAAAAG  711
      |||||||||||
seq2  GTCATAAAAAG  711

seq1: chr17_19863109_19863877
seq2: B6Ng01-251H20.g_64_834 (reverse)

seq1  AATCCCCTACCC--ACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGT  48
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  AATCCCCTACCCCACCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGT  50

seq1  ACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGAT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGAT  100

seq1  GGCCGACTAGGTCATCTTTTGATACATATGCAGCTAAAGACAAGAGCTCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGACTAGGTCATCTTTTGATACATATGCAGCTAAAGACAAGAGCTCC  150

seq1  CGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCC  200

seq1  CTTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATATAAGGAATTTTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATATAAGGAATTTTAA  250

seq1  ACAGGAAAGTAAATTTAGTATTCATGTATAAGAGAGCATTACCTGAGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAGTAAATTTAGTATTCATGTATAAGAGAGCATTACCTGAGAAA  300

seq1  TTTTGCAAAAAAAATTTTTTTTCTAGTCTAGATTTTCCATGTGTAAGTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAAAAAAAATTTTTTTTCTAGTCTAGATTTTCCATGTGTAAGTTA  350

seq1  AGAAACATTTGTGAATTATGAGTACTATCAAGGCAACAGTAGGTTTTTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTTGTGAATTATGAGTACTATCAAGGCAACAGTAGGTTTTTGC  400

seq1  CATGTAACTTAGTACTATAGTTACTTTCAAAAGAGTTACACCAATGTTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAACTTAGTACTATAGTTACTTTCAAAAGAGTTACACCAATGTTAG  450

seq1  TAAAGGCAGAAAAATGTTGTGTATAAAGAGAAAAAAGGCATATGTATTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCAGAAAAATGTTGTGTATAAAGAGAAAAAAGGCATATGTATTAA  500

seq1  AATTTAAATGGTAGTAAAAAATATTTTTAAGGAATTTATTGAAAGTTGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATGGTAGTAAAAAATATTTTTAAGGAATTTATTGAAAGTTGTT  550

seq1  GAGTAGCTGAAAAGCTACAGTTCTGTTCTTTAAAATGGTAGGGCTTGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCTGAAAAGCTACAGTTCTGTTCTTTAAAATGGTAGGGCTTGAAA  600

seq1  TTCTACCTATTTTCCCACTGAAGCCATTCCCAGTTACACATACATTGGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTATTTTCCCACTGAAGCCATTCCCAGTTACACATACATTGGCT  650

seq1  CTACTGAATGAAAAACAAATGACAATAAATATGTAAAAGTTAGAGATAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAATGAAAAACAAATGACAATAAATATGTAAAAGTTAGAGATAGA  700

seq1  GAGCAGAAGGAGTTGTTAGAAAAAACTGAGGGAAAGTAACGTGCATGATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAGGAGTTGTTAGAAAAAACTGAGGGAAAGTAACGTGCATGATA  750

seq1  CTTGTATTTATAAAAGAATTC  769
      |||||||||||||||||||||
seq2  CTTGTATTTATAAAAGAATTC  771