BAC Information

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BAC

Clone NameB6Ng01-251K23
Chromosome17 (Build37)
Map Location 24,358,815 - 24,496,158
singlet/doubletdoublet
Overlap geneCcnf, Abca17, Abca3
Upstream geneVmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik
Downstream geneRnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251K23.bB6Ng01-251K23.g
ACCGA058879GA058880
length1,1591,078
definitionB6Ng01-251K23.b B6Ng01-251K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,494,999 - 24,496,158)(24,358,815 - 24,359,877)
sequence
gaattcccagcagccagccaggaccaaaggtctgtgtgcacgcaccgaat
gtgcactgaatgtacttagttaatatttgctgacagaatctgtggctttt
tagaatacaaaaccaaagcattattcgttcaatgaacatttgccaaatgt
atgctgtgatgggtacaacacactaagtaaggatttaccaatggatgcaa
taatgctctcaatccaaggagtttacagtctgtaaatacttgtctctctt
ataattgttggatattaggtcaagacagtttcgtcaaggtttccattgct
ttgaagagacaccatggccatagtaactcttacaaaggaaagcatttaac
tgcggccagcttacaggcctaagtttagtccattatcatcatggaggaag
catggtgacatacaggcagacatggtgctggagaaggagccaagagtcct
acatctggatcaacaggcagcagaagagagagtaagccactgggcctggc
ttgagctccttaaccatcaaagcccacccccagtgacacacttcctccaa
caaggccacatggcctaatgcttccacataaaatcctggagtagacagga
attagctgtatgtatacaggacagaaagtaagacagacagagggctggct
gaccatggtgctcaaattgctttatcactgaggggtcacaggaggatcat
ggaaaaatgaagggacatttgtgagaaacactccgttaccctgaacatgg
acttgtacctgacagtagcaaacaatgagacagagatgaaagcagactga
ggaggccgctgctgctactgctgctgattacagggtctgcctagtatgta
acttggctgtcctagaacttgctatatacaccagaatagcctccagatcc
aggctagatccatatgcctctacctttgaagtgtagcattaaatcatgtc
ccattgtgccgagcagatataagccccaggaaagagttacagggtacatt
tcgagcctctgaagcatatgtggcttgctgctacttctgactttggtcat
gaatttttttttttctgagtgattaacattggaaatgtcaatgcatggaa
ctcctgcagatgaaatatattcaattcagatggagctatatggtgcagat
gccatataa
gaattcaggtcctctggtcaagcagcaaatgctacaaaccaatgagctgc
ctctgcagcctccttctcccacctcttagaagcctgccactagacacagc
ttttccatttgtttctacggtgaaaaatgtgcttggctgctgaaagaaat
gaggacagggaacagtgctcagcagtactggtgatataaattattagttc
tagagcccaagaagtaaggtaaccctggttgtttctgtacaaaaagagca
agaaagttagcccagtgtcaagtgggaaaggggctgagatctaggcagtt
ccactgtcatatttgggatagaagatgggcacccctacttacactgggcc
tccagtagcccagggaaacttaagacctgtggagactaagacttcataga
agtcagagggacccaggtgtgtgcctagagtaattgtttcctaccggtgc
aggctggaagtgggctgagatcttcttgtgtgtgtgaatctatatatttg
tatgccacatgtagacctggtggccacagaggtgagataccttccaactg
gaatttaaggtgactctgaaccatcatgtgggtgctaggaagcaaaccca
ggtcctctccacaggtaacaagtactcttacagggagccattcgggaacc
atgaacaagatgggaggaaagggataattaccactcatgcatttaatcct
cacggcattcctgtgaggtaggcattactgtcccctctcatgggaggagg
ctgacgcatcccaggttaacactcagaggtgtaggacaacaaccaaaatg
cctcggcagggtggtcagattgctgctaacagtagtaaaaaagagctgcc
atagggatgggacagaaaacagagagctaaatgggtttgtacttgttcag
ggtatctggggcactccctggtactttcttcaggggtcagcatatctgcg
caggctttcagcagaacaccccaggtgttgaaggacaggctgcctcataa
atctacaagggcaaagcattccgcctggacatgctcaaagggaaccagaa
ccctgcttggtttctctccctacggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24494999_24496158
seq2: B6Ng01-251K23.b_51_1209 (reverse)

seq1  TTATATGTGCATCTGCA-CATATA-CT-CATCTTGATTG-ATATATTTCA  46
      ||||||| ||||||||| |||||| || |||||  |||| ||||||||||
seq2  TTATATG-GCATCTGCACCATATAGCTCCATCTGAATTGAATATATTTCA  49

seq1  TCTGCA-GAGTCCATTGCATTTGACATTTTCCAATGTTTAAATCACCTCA  95
      |||||| |||| |  |||| |||||| |||||||||||  ||||| ||||
seq2  TCTGCAGGAGTTCCATGCA-TTGACA-TTTCCAATGTT--AATCA-CTCA  94

seq1  GAAAAAAAAAAA-TCATGAACAAAGTCAGAAGTAGCAGCAAGCCACATAT  144
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAATTCATGACCAAAGTCAGAAGTAGCAGCAAGCCACATAT  144

seq1  GCTTCAGAGGCTCGAATTGTACCCTGTAACTCTTTCCTGGGGCCTTATAT  194
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  GCTTCAGAGGCTCGAAATGTACCCTGTAACTCTTTCCTGGGG-CTTATAT  193

seq1  CTGCTCGGCACAATGGGACATGATTTAATGCTACACTTCAAAGGTAGAGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCGGCACAATGGGACATGATTTAATGCTACACTTCAAAGGTAGAGG  243

seq1  CATATGGATCTAGCCTGGATCTGGAGGCTATTCTGGTGTATATAGCAAGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGATCTAGCCTGGATCTGGAGGCTATTCTGGTGTATATAGCAAGT  293

seq1  TCTAGGACAGCCAAGTTACATACTAGGCAGACCCTGTAATCAGCAGCAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGACAGCCAAGTTACATACTAGGCAGACCCTGTAATCAGCAGCAGT  343

seq1  AGCAGCAGCGGCCTCCTCAGTCTGCTTTCATCTCTGTCTCATTGTTTGCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCGGCCTCCTCAGTCTGCTTTCATCTCTGTCTCATTGTTTGCT  393

seq1  ACTGTCAGGTACAAGTCCATGTTCAGGGTAACGGAGTGTTTCTCACAAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGGTACAAGTCCATGTTCAGGGTAACGGAGTGTTTCTCACAAAT  443

seq1  GTCCCTTCATTTTTCCATGATCCTCCTGTGACCCCTCAGTGATAAAGCAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTCATTTTTCCATGATCCTCCTGTGACCCCTCAGTGATAAAGCAA  493

seq1  TTTGAGCACCATGGTCAGCCAGCCCTCTGTCTGTCTTACTTTCTGTCCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCACCATGGTCAGCCAGCCCTCTGTCTGTCTTACTTTCTGTCCTG  543

seq1  TATACATACAGCTAATTCCTGTCTACTCCAGGATTTTATGTGGAAGCATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATACAGCTAATTCCTGTCTACTCCAGGATTTTATGTGGAAGCATT  593

seq1  AGGCCATGTGGCCTTGTTGGAGGAAGTGTGTCACTGGGGGTGGGCTTTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGTGGCCTTGTTGGAGGAAGTGTGTCACTGGGGGTGGGCTTTGA  643

seq1  TGGTTAAGGAGCTCAAGCCAGGCCCAGTGGCTTACTCTCTCTTCTGCTGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGGAGCTCAAGCCAGGCCCAGTGGCTTACTCTCTCTTCTGCTGC  693

seq1  CTGTTGATCCAGATGTAGGACTCTTGGCTCCTTCTCCAGCACCATGTCTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGATCCAGATGTAGGACTCTTGGCTCCTTCTCCAGCACCATGTCTG  743

seq1  CCTGTATGTCACCATGCTTCCTCCATGATGATAATGGACTAAACTTAGGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGTCACCATGCTTCCTCCATGATGATAATGGACTAAACTTAGGC  793

seq1  CTGTAAGCTGGCCGCAGTTAAATGCTTTCCTTTGTAAGAGTTACTATGGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGCTGGCCGCAGTTAAATGCTTTCCTTTGTAAGAGTTACTATGGC  843

seq1  CATGGTGTCTCTTCAAAGCAATGGAAACCTTGACGAAACTGTCTTGACCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTCTCTTCAAAGCAATGGAAACCTTGACGAAACTGTCTTGACCT  893

seq1  AATATCCAACAATTATAAGAGAGACAAGTATTTACAGACTGTAAACTCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCAACAATTATAAGAGAGACAAGTATTTACAGACTGTAAACTCCT  943

seq1  TGGATTGAGAGCATTATTGCATCCATTGGTAAATCCTTACTTAGTGTGTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGAGAGCATTATTGCATCCATTGGTAAATCCTTACTTAGTGTGTT  993

seq1  GTACCCATCACAGCATACATTTGGCAAATGTTCATTGAACGAATAATGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCATCACAGCATACATTTGGCAAATGTTCATTGAACGAATAATGCT  1043

seq1  TTGGTTTTGTATTCTAAAAAGCCACAGATTCTGTCAGCAAATATTAACTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGTATTCTAAAAAGCCACAGATTCTGTCAGCAAATATTAACTA  1093

seq1  AGTACATTCAGTGCACATTCGGTGCGTGCACACAGACCTTTGGTCCTGGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTCAGTGCACATTCGGTGCGTGCACACAGACCTTTGGTCCTGGC  1143

seq1  TGGCTGCTGGGAATTC  1160
      ||||||||||||||||
seq2  TGGCTGCTGGGAATTC  1159

seq1: chr17_24358815_24359877
seq2: B6Ng01-251K23.g_67_1144

seq1  GAATTCAGGTCCTCTGGTCAAGCAGCAAATGCTACAAACCAATGAGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCCTCTGGTCAAGCAGCAAATGCTACAAACCAATGAGCTGC  50

seq1  CTCTGCAGCCTCCTTCTCCCACCTCTTAGAAGCCTGCCACTAGACACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGCCTCCTTCTCCCACCTCTTAGAAGCCTGCCACTAGACACAGC  100

seq1  TTTTCCATTTGTTTCTACGGTGAAAAATGTGCTTGGCTGCTGAAAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTTGTTTCTACGGTGAAAAATGTGCTTGGCTGCTGAAAGAAAT  150

seq1  GAGGACAGGGAACAGTGCTCAGCAGTACTGGTGATATAAATTATTAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGGGAACAGTGCTCAGCAGTACTGGTGATATAAATTATTAGTTC  200

seq1  TAGAGCCCAAGAAGTAAGGTAACCCTGGTTGTTTCTGTACAAAAAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCCAAGAAGTAAGGTAACCCTGGTTGTTTCTGTACAAAAAGAGCA  250

seq1  AGAAAGTTAGCCCAGTGTCAAGTGGGAAAGGGGCTGAGATCTAGGCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTAGCCCAGTGTCAAGTGGGAAAGGGGCTGAGATCTAGGCAGTT  300

seq1  CCACTGTCATATTTGGGATAGAAGATGGGCACCCCTACTTACACTGGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCATATTTGGGATAGAAGATGGGCACCCCTACTTACACTGGGCC  350

seq1  TCCAGTAGCCCAGGGAAACTTAAGACCTGTGGAGACTAAGACTTCATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAGCCCAGGGAAACTTAAGACCTGTGGAGACTAAGACTTCATAGA  400

seq1  AGTCAGAGGGACCCAGGTGTGTGCCTAGAGTAATTGTTTCCTACCGGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGGGACCCAGGTGTGTGCCTAGAGTAATTGTTTCCTACCGGTGC  450

seq1  AGGCTGGAAGTGGGCTGAGATCTTCTTGTGTGTGTGAATCTATATATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGAAGTGGGCTGAGATCTTCTTGTGTGTGTGAATCTATATATTTG  500

seq1  TATGCCACATGTAGACCTGGTGGCCACAGAGGTGAGATACCTTCCAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACATGTAGACCTGGTGGCCACAGAGGTGAGATACCTTCCAACTG  550

seq1  GAATTTAAGGTGACTCTGAACCATCATGTGGGTGCTAGGAAGCAAACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAGGTGACTCTGAACCATCATGTGGGTGCTAGGAAGCAAACCCA  600

seq1  GGTCCTCTCCACAGGTAACAAGTACTCTTACAGGGAGCCATTCGGGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTCCACAGGTAACAAGTACTCTTACAGGGAGCCATTCGGGAACC  650

seq1  ATGAACAAGATGGGAGGAAAGGGATAATTACCACTCATGCATTTAATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAGATGGGAGGAAAGGGATAATTACCACTCATGCATTTAATCCT  700

seq1  CACGGCATTCCTGTGAGGTAGGCATTACTGTCCCCTCTCATGGGAGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCATTCCTGTGAGGTAGGCATTACTGTCCCCTCTCATGGGAGGAGG  750

seq1  CTGACGCATCCCAGGTTAACACTCAGAGGTGTAGGACAACAACCAAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGCATCCCAGGTTAACACTCAGAGGTGTAGGACAACAACCAAAATG  800

seq1  CCTCGGCAGGGTGGTCAGAATGCTGCTAACAGTAGTAAAAAAGAGCTGCC  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTCGGCAGGGTGGTCAGATTGCTGCTAACAGTAGTAAAAAAGAGCTGCC  850

seq1  ATAGGGATGGAACAGAAAACAGAGAGCT-AATGGGTTTGTACTTGTTCAA  899
      |||||||||| ||||||||||||||||| ||||||||||||||||||| |
seq2  ATAGGGATGGGACAGAAAACAGAGAGCTAAATGGGTTTGTACTTGTTC-A  899

seq1  GGGTATCTGGGGCACT-CCTGGTACTTTCTTCAGGGGTCAGCATATCTGC  948
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGTATCTGGGGCACTCCCTGGTACTTTCTTCAGGGGTCAGCATATCTGC  949

seq1  GCAGGC-TTCAGCAG-ACACCCCAGGTGTTG-AGGACA-GCTGCCTCATA  994
      |||||| |||||||| ||||||||||||||| |||||| |||||||||||
seq2  GCAGGCTTTCAGCAGAACACCCCAGGTGTTGAAGGACAGGCTGCCTCATA  999

seq1  AATC-ACAA-GGCAAAGCATT-CGC--TGACATGCTCAAAGGG-ACCAG-  1037
      |||| |||| ||||||||||| |||   ||||||||||||||| ||||| 
seq2  AATCTACAAGGGCAAAGCATTCCGCCTGGACATGCTCAAAGGGAACCAGA  1049

seq1  ACCCTGC-TGGTT--TCTCCCCACGGAAT  1063
      ||||||| |||||  |||||| |||||||
seq2  ACCCTGCTTGGTTTCTCTCCCTACGGAAT  1078