BAC Information

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BAC

Clone NameB6Ng01-251N03
Chromosome17 (Build37)
Map Location 21,136,431 - 21,291,754
singlet/doubletdoublet
Overlap geneZfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662
Upstream geneEG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5
Downstream geneLOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251N03.bB6Ng01-251N03.g
ACCGA058979GA058980
length1,1641,098
definitionB6Ng01-251N03.b B6Ng01-251N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,136,431 - 21,137,488)(21,290,651 - 21,291,754)
sequence
gaattctaccagactttcaaagaagagtaaaaccaatattactcaaatta
ttccagaaaatagaaacagaaggaacactaccaaactaattttatgagac
catagccatattgatacctaaaccaaagactcaacaaagagaatttcaga
ctagagagacttgtggaagagttggggatagaagagaaaagttggagggg
tcaaggacaccacacaaagacctacagagccaagtaagctgaaatcacag
gggttcacagaaccttggcctctaaccagggagtatcaggagctggacgt
caatcccctataccttttttgcaaatgtgcagtttggtcttcatgtgaga
ccccctaagaagtggagctgtggctgtctccatcagtgtttccccttacc
tggaatgcctgtttcagcctcagtgggagaggattgcctagtcctgctgg
gactagattgtccagtgtggactgatacacaagctaggctcctcttcgtt
gaggagaaaaggtatagccaatggggtgaggcatttgtaaaggtgagact
aggaagagaagggggagggtagctgtggtcaggatgtaaagtgaataata
aaaaatgtcaatggtaaactgaagaactttctttatagaagttcctggta
gaaagcactaggatattagtagaaagttaacaaaaatttccatatagtaa
aatattcaattattctcaaaatgtttctaaaacaaaaatgattttattaa
gaaaaaacactaggatattggtagaaagttaacaaaaatttccatatagt
aaaatattcaattattctcaaaatgtttctaacacaaaaatgttttatta
agaaaaatttattctcaatatttattactatattaaccctgagtgtaaga
agaaatatctctatgcatttatggtcattcacttagtctgtggtacttat
ttgaagacaatttctttaagaattaggatgactgtgaatttcagaatata
cttaactactttattaaaagcatagatcaacattcagaacagagaacata
tattactttctatgccattaaaaatatttgttattattgtgcttataatt
aaaattacatcattttttttccttcacttggttcccaactaaatgttaaa
aaccttcctccttt
gaattcttagaataccgtgtggggctttgactagccttagtatttttaaa
tgtctttttttttctacttcacaattacaaggagaaatcacttagaagtg
tttcctataaaaatgtatacatcactaggtcttaggaacaaaacaacaat
cagtgtgtacaaacctatgcatgcatgcaggagtctgaccattggcaata
accagcaaactattctgttgatacttattcaatgacattgcttgttatta
gttctgaagcttactcagtgtgatgttattttaaaaatgtaacaatctgt
tcttcagcttttgacattgattggcaaattgctagggccagtatcgcctg
agagagtccatgaaccaatagccctctagtcctcaccctgtaggagctaa
tttctttcgggaacatggagtccaggggaagagatgaggtcagaaagaca
actgtgttcagtggggtagaaatcattcatattgagaccctgctgggaag
aggagaaattcagaagagggagaaggcttggggttgaggaagaattgtaa
attacttagagaaggtaagaaggtaagaattgggtgtggaaaatagaaac
tggagacagaggagggaccaacacacagcaaactgggaaggacaaacaca
aaggtacctgggccctgcctgctgctgtgtctctggaatttctctctgtg
cctcatttctggggagagactctgctctgccccagccgaggtgtttttct
tgatggaatgcagcaacacagcgtcctgatggcattccccaccctccttg
tccatcgcatgatgcctctgcgccaacccctgctgtggatgggcttatcc
tctgctagggcactgtgggagagattctcttctctcttctcactgacgct
ctcttcacttatgctgcttgttgaagcatgcaggggacactcatggcacg
tatgtggtgttggtcctgtgtgcgttgtcatctggtttgcccgggagaca
ggccatgcccagtgatcttctgctgctctttgcctaacctctggccgtag
cctgcacttgaccaatgaaagatgccagacgatctgccaaaggttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21136431_21137488
seq2: B6Ng01-251N03.b_154_1209

seq1  TATTGATACCTAAACCAAAGACTCAACAAAGAGAATTTCAGACTAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATACCTAAACCAAAGACTCAACAAAGAGAATTTCAGACTAGAGAG  50

seq1  ACTTGTGGAAGAGTTGGGGATAGAAGAGAAAAGTTGGAGGGGTCAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGAAGAGTTGGGGATAGAAGAGAAAAGTTGGAGGGGTCAAGGAC  100

seq1  ACCACACAAAGACCTACAGAGCCAAGTAAGCTGAAATCACAGGGGTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAAAGACCTACAGAGCCAAGTAAGCTGAAATCACAGGGGTTCAC  150

seq1  AGAACCTTGGCCTCTAACCAGGGAGTATCAGGAGCTGGACGTCAATCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTTGGCCTCTAACCAGGGAGTATCAGGAGCTGGACGTCAATCCCC  200

seq1  TATACCTTTTTTGCAAATGTGCAGTTTGGTCTTCATGTGAGACCCCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTTTTTTGCAAATGTGCAGTTTGGTCTTCATGTGAGACCCCCTAA  250

seq1  GAAGTGGAGCTGTGGCTGTCTCCATCAGTGTTTCCCCTTACCTGGAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGAGCTGTGGCTGTCTCCATCAGTGTTTCCCCTTACCTGGAATGC  300

seq1  CTGTTTCAGCCTCAGTGGGAGAGGATTGCCTAGTCCTGCTGGGACTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCAGCCTCAGTGGGAGAGGATTGCCTAGTCCTGCTGGGACTAGAT  350

seq1  TGTCCAGTGTGGACTGATACACAAGCTAGGCTCCTCTTCGTTGAGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGTGTGGACTGATACACAAGCTAGGCTCCTCTTCGTTGAGGAGAA  400

seq1  AAGGTATAGCCAATGGGGTGAGGCATTTGTAAAGGTGAGACTAGGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATAGCCAATGGGGTGAGGCATTTGTAAAGGTGAGACTAGGAAGAG  450

seq1  AAGGGGGAGGGTAGCTGTGGTCAGGATGTAAAGTGAATAATAAAAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAGGGTAGCTGTGGTCAGGATGTAAAGTGAATAATAAAAAATGT  500

seq1  CAATGGTAAACTGAAGAACTTTCTTTATAGAAGTTCCTGGTAGAAAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTAAACTGAAGAACTTTCTTTATAGAAGTTCCTGGTAGAAAGCAC  550

seq1  TAGGATATTAGTAGAAAGTTAACAAAAATTTCCATATAGTAAAATATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATATTAGTAGAAAGTTAACAAAAATTTCCATATAGTAAAATATTCA  600

seq1  ATTATTCTCAAAATGTTTCTAAAACAAAAATGATTTTATTAAGAAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTCAAAATGTTTCTAAAACAAAAATGATTTTATTAAGAAAAAAC  650

seq1  ACTAGGATATTGGTAGAAAGTTAACAAAAATTTCCATATAGTAAAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGATATTGGTAGAAAGTTAACAAAAATTTCCATATAGTAAAATATT  700

seq1  CAATTATTCTCAAAATGTTTCTAACACAAAAATGTTTTATTAAGAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATTCTCAAAATGTTTCTAACACAAAAATGTTTTATTAAGAAAAAT  750

seq1  TTATTCTCAATATTTATTACTATATTAACCCTGAGTGTAAGAAGAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCAATATTTATTACTATATTAACCCTGAGTGTAAGAAGAAATAT  800

seq1  CTCTATGCATTTATGGTCATTCACTTAGTCTGTGGTACTTATTTGAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGCATTTATGGTCATTCACTTAGTCTGTGGTACTTATTTGAAGAC  850

seq1  AA-TTCTTTAAGAA-TAGGATGACTGTGAATTTCAGAATATACTTAACTA  898
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTAAGAATTAGGATGACTGTGAATTTCAGAATATACTTAACTA  900

seq1  CTTAATTAAAAAGGCATAAAATCAACATTCAGAACAAGAGAACATATATT  948
      ||| |||||||  |||| | ||||||||||||||| ||||||||||||||
seq2  CTTTATTAAAA--GCAT-AGATCAACATTCAGAAC-AGAGAACATATATT  946

seq1  AACTTTCTAATGCCAATTAAAAATA-TTGTTATTATTGTGCTTATAA-TA  996
       ||||||| ||||| |||||||||| ||||||||||||||||||||| ||
seq2  -ACTTTCT-ATGCC-ATTAAAAATATTTGTTATTATTGTGCTTATAATTA  993

seq1  AAATTACATCATTTTTTTCTCTTCACTTTGTTCCC-ACTAAATGTTAAAA  1045
      ||||||||||||||||||  |||||||| |||||| ||||||||||||||
seq2  AAATTACATCATTTTTTTTCCTTCACTTGGTTCCCAACTAAATGTTAAAA  1043

seq1  ACTTCCCTCCTTT  1058
      || | ||||||||
seq2  ACCTTCCTCCTTT  1056

seq1: chr17_21290651_21291754
seq2: B6Ng01-251N03.g_66_1163 (reverse)

seq1  CCCAACC-TTGGCAGATCGGTCTGGCCATCCTCCATTGGTCAGGTGCCAG  49
      ||||||| |||||||||| |||||| |||| | ||||||||| ||| |||
seq2  CCCAACCTTTGGCAGATC-GTCTGG-CATCTTTCATTGGTCAAGTG-CAG  47

seq1  CCTACGGCCAGAAGGTTAGGCAAAGAGCAGGCAGAAGATCCACTGGGCAT  99
       |||||||||| ||||||||||||||||| ||||||||| ||||||||||
seq2  GCTACGGCCAG-AGGTTAGGCAAAGAGCA-GCAGAAGAT-CACTGGGCAT  94

seq1  GGCCTTGTCTTCCGGGCAAACCAGATGAC-ACGCACACAGGACCAACACC  148
      |||| ||||| |||||||||||||||||| ||||||||||||||||||||
seq2  GGCC-TGTCTCCCGGGCAAACCAGATGACAACGCACACAGGACCAACACC  143

seq1  ACATACGTGCCATGAGTGTCCCCTGCATGCTTTCAACAAGCAGCATAAGT  198
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACATACGTGCCATGAGTGTCCCCTGCATGC-TTCAACAAGCAGCATAAGT  192

seq1  GAAGAGAGCGTCAGTGAGAAGAGAGAAGAGAATCTCTCCCACAGTGCCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGCGTCAGTGAGAAGAGAGAAGAGAATCTCTCCCACAGTGCCCT  242

seq1  AGCAGAGGATAAGCCCATCCACAGCAGGGGTTGGCGCAGAGGCATCATGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGATAAGCCCATCCACAGCAGGGGTTGGCGCAGAGGCATCATGC  292

seq1  GATGGACAAGGAGGGTGGGGAATGCCATCAGGACGCTGTGTTGCTGCATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACAAGGAGGGTGGGGAATGCCATCAGGACGCTGTGTTGCTGCATT  342

seq1  CCATCAAGAAAAACACCTCGGCTGGGGCAGAGCAGAGTCTCTCCCCAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAGAAAAACACCTCGGCTGGGGCAGAGCAGAGTCTCTCCCCAGAA  392

seq1  ATGAGGCACAGAGAGAAATTCCAGAGACACAGCAGCAGGCAGGGCCCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCACAGAGAGAAATTCCAGAGACACAGCAGCAGGCAGGGCCCAGG  442

seq1  TACCTTTGTGTTTGTCCTTCCCAGTTTGCTGTGTGTTGGTCCCTCCTCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGTGTTTGTCCTTCCCAGTTTGCTGTGTGTTGGTCCCTCCTCTG  492

seq1  TCTCCAGTTTCTATTTTCCACACCCAATTCTTACCTTCTTACCTTCTCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGTTTCTATTTTCCACACCCAATTCTTACCTTCTTACCTTCTCTA  542

seq1  AGTAATTTACAATTCTTCCTCAACCCCAAGCCTTCTCCCTCTTCTGAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTTACAATTCTTCCTCAACCCCAAGCCTTCTCCCTCTTCTGAATT  592

seq1  TCTCCTCTTCCCAGCAGGGTCTCAATATGAATGATTTCTACCCCACTGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTTCCCAGCAGGGTCTCAATATGAATGATTTCTACCCCACTGAA  642

seq1  CACAGTTGTCTTTCTGACCTCATCTCTTCCCCTGGACTCCATGTTCCCGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTGTCTTTCTGACCTCATCTCTTCCCCTGGACTCCATGTTCCCGA  692

seq1  AAGAAATTAGCTCCTACAGGGTGAGGACTAGAGGGCTATTGGTTCATGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTAGCTCCTACAGGGTGAGGACTAGAGGGCTATTGGTTCATGGA  742

seq1  CTCTCTCAGGCGATACTGGCCCTAGCAATTTGCCAATCAATGTCAAAAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAGGCGATACTGGCCCTAGCAATTTGCCAATCAATGTCAAAAGC  792

seq1  TGAAGAACAGATTGTTACATTTTTAAAATAACATCACACTGAGTAAGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACAGATTGTTACATTTTTAAAATAACATCACACTGAGTAAGCTT  842

seq1  CAGAACTAATAACAAGCAATGTCATTGAATAAGTATCAACAGAATAGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTAATAACAAGCAATGTCATTGAATAAGTATCAACAGAATAGTTT  892

seq1  GCTGGTTATTGCCAATGGTCAGACTCCTGCATGCATGCATAGGTTTGTAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTATTGCCAATGGTCAGACTCCTGCATGCATGCATAGGTTTGTAC  942

seq1  ACACTGATTGTTGTTTTGTTCCTAAGACCTAGTGATGTATACATTTTTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATTGTTGTTTTGTTCCTAAGACCTAGTGATGTATACATTTTTAT  992

seq1  AGGAAACACTTCTAAGTGATTTCTCCTTGTAATTGTGAAGTAGAAAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACACTTCTAAGTGATTTCTCCTTGTAATTGTGAAGTAGAAAAAAA  1042

seq1  AAGACATTTAAAAATACTAAGGCTAGTCAAAGCCCCACACGGTATTCTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTAAAAATACTAAGGCTAGTCAAAGCCCCACACGGTATTCTAA  1092

seq1  GAATTC  1104
      ||||||
seq2  GAATTC  1098