BAC Information

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BAC

Clone NameB6Ng01-253O13
Chromosome17 (Build37)
Map Location 39,484,958 - 39,612,629
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC626985, LOC100043297
Downstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1, LOC668229
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253O13.bB6Ng01-253O13.g
ACCGA060515GA060516
length1,135972
definitionB6Ng01-253O13.b B6Ng01-253O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,611,477 - 39,612,629)(39,484,958 - 39,485,779)
sequence
gaattctttgattctgcattttttaactacctgtgtgactatatttcaca
ttacaaataaagaaatttccatccaaaaaaattaaaattgttaaaaaaat
tattttttttgtttttgctggctggtctttctttctttctctctttcttt
ctttctttctttctttctttctttctttctttctctctctctctctctct
ctctctctctctctctttctttctttctttctttctttctttagttcctt
ctctcttacatcctttatttctctattcttgtgtgttttgtttgtttatt
tgtttgttttggattttagttctcaaaacaggattttcctctgtaggcat
aactatgctactctgtcatctatacaatcatcaaactcacagagatccat
ctgcactttccccaatgtactatatatgaacatagagataaatctgcaca
tgccccagtgtactgtatttgaagtcatggatgaacactgacaggcttct
atcctctttttttccagtcttgctagctaaagtgacagaaaataaacaaa
ttaagccaaaactgaaagagaagttcattgaaatttggcgtaatgtgttg
ataaattccttataaatcaaagaaaaatcaggaatggaaattttattttg
aaatgaaccaaaactaaaagtattctttttctgttttatctatgaaatga
tttggaatccataataagataattccaataagcttcagctgctcaattaa
attattctttcagtccgttatatttcttttctctccttttctttttcttt
ctttagaaaataacctgttcttttctgaaaaacctgcaggaagagactaa
gctagagaatgtccagtgacaggctaaaattgggatagagctcaagatga
gccccaaggactgaaactataatgatgtcatatggtatcacagagagcct
attatgagtgctgtcagttagatgccataagagctgaacgagtcagatgc
gatatttataccaaacaatggacagatgctgaatgacctctgtcgttgaa
tagggaaatctagagagatggtaacagggccaccttaaagtacacagcag
tttactatatgggcacttgaagctcagacaatgag
gaattctctgtcctggcacagtcaattggtctggcatatctagcaccctg
tggaaacatataaacagaacttctccaggaataaaatatctacaccttat
tattatccagttagtgggccttttatcttcttagatagttgaaatatttt
taaaagggagcatatattttgttctgtaaaatataatgaggaaataagta
attataattttattttggaatttaggtgtctacaactttaaggtctgatg
gatgcattccataaaagcctgtcccaataaactatagggtatgacagtga
aatgtgagagggtaaatgtcaatcaatctttttctttctttttttctcct
tttcttttttaaaaacagattattttatttatttacataaacaatattgt
ttccataccggtttttcttccacaaactgaatattctatatgttctgccc
ctgtttctgtgagagtgcttcccaacccacctaccaacttctgcctcacc
accctagcattctcctacactggggcatcaagctttcacaggaccaaggg
cctcccattgatgccaaataaagtaatcctctgctacatatgcagctgga
gatatggatccctgaatgtgtactcttttgatggtggttcagtccttggg
atttctgaggtgtctaattggttgatattgttgttcttcctatggggtta
caagccccttcatctccttcagttcttcccctaactccttcattgagatc
tcagtgctcagtccaagggttggctccaacaacctgcatttgtattggtc
aggctctggcagagcctctcagagacagctataccaagctcctgtcagca
agctcttcatggtatcagcaatagggtctggatttggtgtctgtagatgg
aatgaatctctacgtggcacaatctctggctagcctttcctttagtctct
gttcactctttgcccgtgcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_39611477_39612629
seq2: B6Ng01-253O13.b_47_1181 (reverse)

seq1  CTCATTGTCTGTGAGTTCTCAGGTGCCCATGTTAGTTAACACTGCTGGTG  50
      |||||||||  |||| | ||| ||||||||  ||||  | |||||| |||
seq2  CTCATTGTC--TGAGCT-TCAAGTGCCCAT-ATAGT--AAACTGCT-GTG  43

seq1  TTATTTTAGGGTTGCCCTGTTCCCCATCCTCTTCTAGATTTTCCCTAATT  100
       || |||| ||| ||||||||  |||| ||| |||||| ||||||| |||
seq2  -TACTTTAAGGTGGCCCTGTT-ACCAT-CTC-TCTAGA-TTTCCCT-ATT  87

seq1  CAACGACAGAGGTCA-TCAGCATCTGTCCATTGTTTGGGTATAAATATCT  149
      ||||||||||||||| |||||||||||||||||||| |||||||||||| 
seq2  CAACGACAGAGGTCATTCAGCATCTGTCCATTGTTT-GGTATAAATATC-  135

seq1  GCATCTGACTCTTTCAGCTTCTTATGGCATCTAACTGACAGCACTCATAA  199
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  GCATCTGACTCGTTCAGC-TCTTATGGCATCTAACTGACAGCACTCATAA  184

seq1  TAGGCTCTTCTGTGATACCATAATGACATCATTAATAGTTTCAGTCCTTG  249
      ||||||| ||||||||||||| ||||||||||| ||||||||||||||||
seq2  TAGGCTC-TCTGTGATACCAT-ATGACATCATT-ATAGTTTCAGTCCTTG  231

seq1  GGGCCTCATCTTGAGCTCTATCCCAATTTTAGCCTGTCACTGGACATTCT  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGG-CTCATCTTGAGCTCTATCCCAATTTTAGCCTGTCACTGGACATTCT  280

seq1  TTAGCTTAGTCTCTTCCCTGCAGGTTTTTCAGAAAAGAACAGGTTATTTT  349
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTAGCTTAGTCTCTT-CCTGCAGGTTTTTCAGAAAAGAACAGGTTATTTT  329

seq1  CTAAAGAAAGAAAAAGAAAAGGAGAGAAAAGAAATATAACGGATTGAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTAAAGAAAGAAAAAGAAAAGGAGAGAAAAGAAATATAACGGACTGAAAG  379

seq1  AATAATTTAATTGAGCAGCTGAAGCTTATTGGAATTATCTTATTATGGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTAATTGAGCAGCTGAAGCTTATTGGAATTATCTTATTATGGAT  429

seq1  TCCAAATCATTTCATAGATAAAACAGAAAAAGAATACTTTTAGTTTTGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATCATTTCATAGATAAAACAGAAAAAGAATACTTTTAGTTTTGGT  479

seq1  TCATTTCAAAATAAAATTTCCATTCCTGATTTTTCTTTGATTTATAAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAAAATAAAATTTCCATTCCTGATTTTTCTTTGATTTATAAGGA  529

seq1  ATTTATCAACACATTACGCCAAATTTCAATGAACTTCTCTTTCAGTTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCAACACATTACGCCAAATTTCAATGAACTTCTCTTTCAGTTTTG  579

seq1  GCTTAATTTGTTTATTTTCTGTCACTTTAGCTAGCAAGACTGGAAAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATTTGTTTATTTTCTGTCACTTTAGCTAGCAAGACTGGAAAAAAA  629

seq1  GAGGATAGAAGCCTGTCAGTGTTCATCCATGACTTCAAATACAGTACACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAGAAGCCTGTCAGTGTTCATCCATGACTTCAAATACAGTACACT  679

seq1  GGGGCATGTGCAGATTTATCTCTATGTTCATATATAGTACATTGGGGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATGTGCAGATTTATCTCTATGTTCATATATAGTACATTGGGGAAA  729

seq1  GTGCAGATGGATCTCTGTGAGTTTGATGATTGTATAGATGACAGAGTAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATGGATCTCTGTGAGTTTGATGATTGTATAGATGACAGAGTAGC  779

seq1  ATAGTTATGCCTACAGAGGAAAATCCTGTTTTGAGAACTAAAATCCAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATGCCTACAGAGGAAAATCCTGTTTTGAGAACTAAAATCCAAAA  829

seq1  CAAACAAACAAACAAACAAAACACACAAGAATAGAGAAATAAAGGATGTA  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATAAACAAACAAAACACACAAGAATAGAGAAATAAAGGATGTA  879

seq1  AGAGAGAAGGAACTAAAGAAAGAAAGAAAGAAAGAAAGAA--AGAGAGAG  947
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  AGAGAGAAGGAACTAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAG  929

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAA  979

seq1  AGAAAGAAAGAAAGAGAGAAAGAAAGAAAGACCAGCCAGCAAAAACAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAGAGAAAGAAAGAAAGACCAGCCAGCAAAAACAAAA  1029

seq1  AAAATAATTTTTTTAACAATTTTAATTTTTTTGGATGGAAATTTCTTTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTTTTTAACAATTTTAATTTTTTTGGATGGAAATTTCTTTAT  1079

seq1  TTGTAATGTGAAATATAGTCACACAGGTAGTTAAAAAATGCAGAATCAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATGTGAAATATAGTCACACAGGTAGTTAAAAAATGCAGAATCAAA  1129

seq1  GAATTC  1153
      ||||||
seq2  GAATTC  1135

seq1: chr17_39484958_39485779
seq2: B6Ng01-253O13.g_63_884

seq1  GAATTCTCTGTCCTGGCACAGTCAATTGGTCTGGCATATCTAGCACCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTCCTGGCACAGTCAATTGGTCTGGCATATCTAGCACCCTG  50

seq1  TGGAAACATATAAACAGAACTTCTCCAGGAATAAAATATCTACACCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACATATAAACAGAACTTCTCCAGGAATAAAATATCTACACCTTAT  100

seq1  TATTATCCAGTTAGTGGGCCTTTTATCTTCTTAGATAGTTGAAATATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCAGTTAGTGGGCCTTTTATCTTCTTAGATAGTTGAAATATTTT  150

seq1  TAAAAGGGAGCATATATTTTGTTCTGTAAAATATAATGAGGAAATAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGAGCATATATTTTGTTCTGTAAAATATAATGAGGAAATAAGTA  200

seq1  ATTATAATTTTATTTTGGAATTTAGGTGTCTACAACTTTAAGGTCTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTTTATTTTGGAATTTAGGTGTCTACAACTTTAAGGTCTGATG  250

seq1  GATGCATTCCATAAAAGCCTGTCCCAATAAACTATAGGGTATGACAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATTCCATAAAAGCCTGTCCCAATAAACTATAGGGTATGACAGTGA  300

seq1  AATGTGAGAGGGTAAATGTCAATCAATCTTTTTCTTTCTTTTTTTCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGAGGGTAAATGTCAATCAATCTTTTTCTTTCTTTTTTTCTCCT  350

seq1  TTTCTTTTTTAAAAACAGATTATTTTATTTATTTACATAAACAATATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTAAAAACAGATTATTTTATTTATTTACATAAACAATATTGT  400

seq1  TTCCATACCGGTTTTTCTTCCACAAACTGAATATTCTATATGTTCTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATACCGGTTTTTCTTCCACAAACTGAATATTCTATATGTTCTGCCC  450

seq1  CTGTTTCTGTGAGAGTGCTTCCCAACCCACCTACCAACTTCTGCCTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTGTGAGAGTGCTTCCCAACCCACCTACCAACTTCTGCCTCACC  500

seq1  ACCCTAGCATTCTCCTACACTGGGGCATCAAGCTTTCACAGGACCAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGCATTCTCCTACACTGGGGCATCAAGCTTTCACAGGACCAAGGG  550

seq1  CCTCCCATTGATGCCAAATAAAGTAATCCTCTGCTACATATGCAGCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATTGATGCCAAATAAAGTAATCCTCTGCTACATATGCAGCTGGA  600

seq1  GATATGGATCCCTGAATGTGTACTCTTTTGATGGTGGTTCAGTCCTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGATCCCTGAATGTGTACTCTTTTGATGGTGGTTCAGTCCTTGGG  650

seq1  ATTTCTGAGGTGTCTAATTGGTTGATATTGTTGTTCTTCCTATGGGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGGTGTCTAATTGGTTGATATTGTTGTTCTTCCTATGGGGTTA  700

seq1  CAAGCCCCTTCATCTCCTTCAGTTCTTCCCCTAACTCCTTCATTGAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCTTCATCTCCTTCAGTTCTTCCCCTAACTCCTTCATTGAGATC  750

seq1  TCAGTGCTCAGTCCAAGGGTTGGCTCCAACAACCTGCATTTGTATTGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTCAGTCCAAGGGTTGGCTCCAACAACCTGCATTTGTATTGGTC  800

seq1  AGGCTCTGGCAGAGCCTCTCAG  822
      ||||||||||||||||||||||
seq2  AGGCTCTGGCAGAGCCTCTCAG  822