BAC Information

Click to search

BAC

Clone NameB6Ng01-254B04
Chromosome17 (Build37)
Map Location 19,812,283 - 19,813,438
singlet/doubletsinglet
Overlap geneEG224572
Upstream geneVmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576
Downstream geneEG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254B04.bB6Ng01-254B04.g
ACCGA060637GA060638
length1,1551,131
definitionB6Ng01-254B04.b B6Ng01-254B04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattaggtaaataggtttaggtaagctcctttaccttaactagc
cattatttatagattttcaaagaatatattatttatagtacatatattga
ttgtttacacattctgtttataagtcaggaattattttcctccaaagagc
acatctgttgttttcacatataaaaacccacccttttttttcatcaactt
tacaactttttaaaaacatatcttaaataatattctgaagttcatttctt
tgcatgtgactctggtagctatttttctcatataattatatgagtatagc
agcatggaattactaacgtcatagaaagaaacagaaaaggctgcttctgt
atctgaatagatgacattaaatgagtacagtgccttgacatttgcatttt
tatcattgtgtatattatggtgtttgtatcggagactgtctgcatgtatg
tctcttacagcatgcagttgtatatagtacagaaagaataaattcaagta
aaaaaaacataaggttgattcctaactattcactttacttatagtatatt
atatttgtttatatatttctgtattaatgcactaatacattatgcatttc
attcatttaatgctcacttgcttgcttcctttactcaactctgtatatat
tagttgactgtatgttgttgtgtacatcagactgatattgaactcagaaa
tacccaccggtctctttttccacactattcagaataaaggcttgcaccag
catatctgcctactggaattctaagttttattttcacatatgcctagatc
cctaaacagcaaacctaaagaggttctcttgtttatgtctcatatgctcc
atatggtcacgttattaaagggatatactcatatttcttttggggaggta
tgaactcaataactcacacttgctttgttctactctctgaaattaatctg
tatctgtttaataatatcttttgtggaaaaaaataacatttttactctga
aaggccccaaaatacataccaacaaaataatattacttaatacatctgcc
aagtgagttgatcacagaaaaaaaaaaaaactttcattaagttccattga
ataaatatttcttcctcccacaatacttaaattttaagtcaagcattgaa
taaat
gaattctcacctgaggaatattgaatggctgagaagaatctgaaaaaatg
ttcagcatctgtaatcatcagggaaatgcaaagcaaaacatcccttagat
tccacatcacaagagtcagaatggctaatatcaaaaattcagatgacagc
agacactggcgaggatttggagaaagaggaacacttctccattattggtg
gggtttcaagcttgtacaaccagtctggaaatcagtctggcagttcctca
gaaaattggacaatagtactacctgaggatcccacaatacctttcctggg
catatacccagaagatgctccaactggtaagaaggacacatgctccacta
tgttcatagcagccttaattataatagccagaaactgaaaaaaaaaaaaa
aacagacacccctcaacagaggagtggatacagaaaatatggtacattta
cacaatggagtactacacagctattaaaaagaatgaatttatgaaattcc
taggcaaatggatggacctggagtgcatcatcatgagtgaggtaaaccaa
taacaaaagaactcacaatatatgtaatcactgataagtggatattagcc
cagaatcttagaatacccaagataaaagaagaccaaggtgtggacaattt
gccccttcatagaattgggaacaaaacacccatggaaggagatacagaga
taaagtttgtagctgagatgaaagggcagaccatctagagattgacatac
cctgggatccatcacataatctgcctccaaaggctgacaccattccatat
actcacaagattttgctgaaaggaccctgatatagctgtctcttgtgagg
ctaagccggggcctagccaacacagaagtggttgttcacagtcacctatt
ggatggatcacagagctcacaatggaggagctagagaaagtacctaagga
actaaaggatctgcaactataggtggacacaatctgaactaacagtacac
cttgagctctgtgctgctgcatatgtatcagagatgctactcggcatatt
gaaagtgagtcggttgcctttgcacttattatgctcatacagggactcaa
ggataagaaagtggcatgtttgtgggggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19812283_19813438
seq2: B6Ng01-254B04.b_47_1201 (reverse)

seq1  ATTTATTTCCAATGCTTTTGACCTAAAATTTTAAGTATTGTGGGA-GAAG  49
      |||||||  ||||||  ||||| ||||| |||||||||||||||| ||||
seq2  ATTTATT--CAATGC--TTGACTTAAAA-TTTAAGTATTGTGGGAGGAAG  45

seq1  AAATATTTATACAATGAAACCTTAATGAAAGTTTTTTTTTTTTTCCTGTG  99
      |||||||||| ||||| || |||||||||||||||||||||||| |||||
seq2  AAATATTTATTCAATGGAA-CTTAATGAAAGTTTTTTTTTTTTT-CTGTG  93

seq1  ATCAACTCACTTTGGCAGATGTATTAAGTAATATTATTTTGTTGGTATGT  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTCAC-TTGGCAGATGTATTAAGTAATATTATTTTGTTGGTATGT  142

seq1  A-TTTGGGGCCTTTCAGAGT-AAAATGT--ATTTTTTCCACAAAAGATAT  195
      | |||||||||||||||||| |||||||   |||||||||||||||||||
seq2  ATTTTGGGGCCTTTCAGAGTAAAAATGTTATTTTTTTCCACAAAAGATAT  192

seq1  TATTAAACAGATACAGATTAATTTCAGAGAGTAGAACAAAGCAAGTGTGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACAGATACAGATTAATTTCAGAGAGTAGAACAAAGCAAGTGTGA  242

seq1  GTTATTGAGTTCATACCT-CCCAAAAG-AATATGAGTATATCCCTTTAAT  293
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  GTTATTGAGTTCATACCTCCCCAAAAGAAATATGAGTATATCCCTTTAAT  292

seq1  AACGTGACCATATGGAGCATATGAGACATAAACAAGAGAACCTCTTTAGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGACCATATGGAGCATATGAGACATAAACAAGAGAACCTCTTTAGG  342

seq1  TTTGCTGTTTAGGGATCTAGGCATATGTGAAAATAAAACTTAGAATTCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTTTAGGGATCTAGGCATATGTGAAAATAAAACTTAGAATTCCA  392

seq1  GTAGGCAGATATGCTGGTGCAAGCCTTTATTCTGAATAGTGTGGAAAAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGATATGCTGGTGCAAGCCTTTATTCTGAATAGTGTGGAAAAAG  442

seq1  AGACCGGTGGGTATTTCTGAGTTCAATATCAGTCTGATGTACACAACAAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGGTGGGTATTTCTGAGTTCAATATCAGTCTGATGTACACAACAAC  492

seq1  ATACAGTCAACTAATATATACAGAGTTGAGTAAAGGAAGCAAGCAAGTGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTCAACTAATATATACAGAGTTGAGTAAAGGAAGCAAGCAAGTGA  542

seq1  GCATTAAATGAATGAAATGCATAATGTATTAGTGCATTAATACAGAAATA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAATGAATGAAATGCATAATGTATTAGTGCATTAATACAGAAATA  592

seq1  TATAAACAAATATAATATACTATAAGTAAAGTGAATAGTTAGGAATCAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAAATATAATATACTATAAGTAAAGTGAATAGTTAGGAATCAAC  642

seq1  CTTATGTTTTTTTTACTTGAATTTATTCTTTCTGTACTATATACAACTGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTTTTTTTTACTTGAATTTATTCTTTCTGTACTATATACAACTGC  692

seq1  ATGCTGTAAGAGACATACATGCAGACAGTCTCCGATACAAACACCATAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTAAGAGACATACATGCAGACAGTCTCCGATACAAACACCATAAT  742

seq1  ATACACAATGATAAAAATGCAAATGTCAAGGCACTGTACTCATTTAATGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAATGATAAAAATGCAAATGTCAAGGCACTGTACTCATTTAATGT  792

seq1  CATCTATTCAGATACAGAAGCAGCCTTTTCTGTTTCTTTCTATGACGTTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTCAGATACAGAAGCAGCCTTTTCTGTTTCTTTCTATGACGTTA  842

seq1  GTAATTCCATGCTGCTATACTCATATAATTATATGAGAAAAATAGCTACC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCCATGCTGCTATACTCATATAATTATATGAGAAAAATAGCTACC  892

seq1  AGAGTCACATGCAAAGAAATGAACTTCAGAATATTATTTAAGATATGTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACATGCAAAGAAATGAACTTCAGAATATTATTTAAGATATGTTT  942

seq1  TTAAAAAGTTGTAAAGTTGATGAAAAAAAAGGGTGGGTTTTTATATGTGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTTGTAAAGTTGATGAAAAAAAAGGGTGGGTTTTTATATGTGA  992

seq1  AAACAACAGATGTGCTCTTTGGAGGAAAATAATTCCTGACTTATAAACAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAGATGTGCTCTTTGGAGGAAAATAATTCCTGACTTATAAACAG  1042

seq1  AATGTGTAAACAATCAATATATGTACTATAAATAATATATTCTTTGAAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTAAACAATCAATATATGTACTATAAATAATATATTCTTTGAAAA  1092

seq1  TCTATAAATAATGGCTAGTTAAGGTAAAGGAGCTTACCTAAACCTATTTA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAATAATGGCTAGTTAAGGTAAAGGAGCTTACCTAAACCTATTTA  1142

seq1  CCTAATGGAATTC  1156
      |||||||||||||
seq2  CCTAATGGAATTC  1155