BAC Information

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BAC

Clone NameB6Ng01-254P03
Chromosome17 (Build37)
Map Location 67,298,166 - 67,439,716
singlet/doubletdoublet
Overlap genePtprm
Upstream geneTwsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
Downstream geneLrrc30, Lama1, Arhgap28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254P03.bB6Ng01-254P03.g
ACCGA061276GA061277
length1,1441,116
definitionB6Ng01-254P03.b B6Ng01-254P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,298,166 - 67,299,319)(67,438,607 - 67,439,716)
sequence
gaattctctagaattatctcccctcgctttctccttcaagtctccaattc
tacactgcgagtttcacagagagcccaaatggaatagccttttaggggga
ccgaaatcttcgggggagcctcgagatgatggtaattgcagccagcataa
aatataggtctttaattggggtctgggcgatttgctctgtgaacacaaag
gaatggataattaaatttgatttcaggggtgaaaggggccaaggtactct
gcgagaaatgcggtatttgaaggaaatactaaaagcacggcaggagtatg
ctctagaagggggttggacaagagctgtgggagggcagaggcccatggtt
aaaagtggagtgatgtgaaaaattcagaaagcttggaggggacgaacgtg
gctgttaaattctggggaggacaacgcaagagaaagtagtagtaataaat
aataaataacttccagagataacgtatttaccttgttgggtttttttctt
cgagatttgattattttcattttacacatctattgcatgaatgttagatt
gtatgttcctggaccacatattctgctcactgagtccagaaaaggacatc
ggatctagggtgggagctacagagagctgtgaggtgctaggaactgaact
gaggttctcgggcagagaaggcagtgctcctaaccgctgcgctatctcta
tggcacctactagaatcatttaaaggaagcaatggaaaggttgctttacc
ttggtgacttcttttgtactttttctgaaagcgtcattatagttgctgag
cagcactgagtggcaagctaggcgcccttacatgactcctgggctctcat
tccttcctctttcaaggttaccaagctcggacaaaggatgactgagtagt
cagttatctagactcgtgatcttgagctgtttcagctcttaatacacaat
gggccccaatggcaggcaactccatcactctgtttcactttgagtcgaac
ggacttttgtttgggctcactgcgcatgagctaaagtgtctgggtttggc
cactgtttctttcatgttggtgatgagaatataagcagatgctgtttctg
tgttctcatgtcttggtacatagtggaggtggactgtgagatgc
gaattccttccccagacggctccataaaaaggtaggagggagcggagatg
gagccatcgaacagagaggctgctgattcacggatacctccctgttgaat
cagattccctaggtgagctgaaggccctggcagaagattgggctctactt
aagtaagtggggggaggctaaagcaagatttacggtttgccagctgacag
ctttgctggtaaatgaggaattgagggactaggcctgtctgatcttaccc
actacttcacttttaggctcaactactatcttccatacagctgccaagcc
ttgtacactgtgcttgccagaagaccattcctttactctcaaaaaatttg
caagttcccagcagcctgtgtgccacagctaccaagaggaggggttttca
gaatgctgctcagtgactccaacagctgcaggaggcattggttggtcaat
gacacttaggcagaggtgaactaagtcttgttctgtaggctgtcttggga
cccaggtgtatctctgagtctccaggaggggacagggcaggtgcggtccc
agctggagtctggcatcagccctggtgttggcagagtacctcgggagcct
gttgctccctgaagcacgcttgggaaatgtaggtttcacaggcacctgaa
aaaaacaccacatcctctagtcactgaattccttggctgtggcccttgct
ctaagtgcaggacagttaacccacttcctgcctttgggacaagtgcagaa
tgggatataaaagtgaggtacaactctgcctctagcatgaatgcgagtct
aggcatcagccccagactctgcatcctgctctttaacaagatgaacagtc
tggttttaagagaccagtgtgaaccgaggagcctctcgcctcactattga
catggaccggcatccaggaggctttggaatttgtgtgatggtcttttttt
tatctcaacacccctgtctcttcatttttttttttttcaaacttgctaca
tctgtaaatctcattctcaacttgttatttgaacaatcaaagataggcac
ctcttctgatcagcaattgtcacacctcttgggtggctgctgcctggctt
atcacaacaccactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_67298166_67299319
seq2: B6Ng01-254P03.b_46_1189

seq1  GAATTCTCTAGAATTATCTCCCCTCGCTTTCTCCTTCAAGTCTCCAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGAATTATCTCCCCTCGCTTTCTCCTTCAAGTCTCCAATTC  50

seq1  TACACTGCGAGTTTCACAGAGAGCCCAAATGGAATAGCCTTTTAGGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGCGAGTTTCACAGAGAGCCCAAATGGAATAGCCTTTTAGGGGGA  100

seq1  CCGAAATCTTCGGGGGAGCCTCGAGATGATGGTAATTGCAGCCAGCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAATCTTCGGGGGAGCCTCGAGATGATGGTAATTGCAGCCAGCATAA  150

seq1  AATATAGGTCTTTAATTGGGGTCTGGGCGATTTGCTCTGTGAACACAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGGTCTTTAATTGGGGTCTGGGCGATTTGCTCTGTGAACACAAAG  200

seq1  GAATGGATAATTAAATTTGATTTCAGGGGTGAAAGGGGCCAAGGTACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATAATTAAATTTGATTTCAGGGGTGAAAGGGGCCAAGGTACTCT  250

seq1  GCGAGAAATGCGGTATTTGAAGGAAATACTAAAAGCACGGCAGGAGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAAATGCGGTATTTGAAGGAAATACTAAAAGCACGGCAGGAGTATG  300

seq1  CTCTAGAAGGGGGTTGGACAAGAGCTGTGGGAGGGCAGAGGCCCATGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAAGGGGGTTGGACAAGAGCTGTGGGAGGGCAGAGGCCCATGGTT  350

seq1  AAAAGTGGAGTGATGTGAAAAATTCAGAAAGCTTGGAGGGGACGAACGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGAGTGATGTGAAAAATTCAGAAAGCTTGGAGGGGACGAACGTG  400

seq1  GCTGTTAAATTCTGGGGAGGACAACGCAAGAGAAAGTAGTAGTAATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAAATTCTGGGGAGGACAACGCAAGAGAAAGTAGTAGTAATAAAT  450

seq1  AATAAATAACTTCCAGAGATAACGTATTTACCTTGTTGGGTTTTTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAACTTCCAGAGATAACGTATTTACCTTGTTGGGTTTTTTTCTT  500

seq1  CGAGATTTGATTATTTTCATTTTACACATCTATTGCATGAATGTTAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATTTGATTATTTTCATTTTACACATCTATTGCATGAATGTTAGATT  550

seq1  GTATGTTCCTGGACCACATATTCTGCTCACTGAGTCCAGAAAAGGACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTCCTGGACCACATATTCTGCTCACTGAGTCCAGAAAAGGACATC  600

seq1  GGATCTAGGGTGGGAGCTACAGAGAGCTGTGAGGTGCTAGGAACTGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGGGTGGGAGCTACAGAGAGCTGTGAGGTGCTAGGAACTGAACT  650

seq1  GAGGTTCTCGGGCAGAGAAGGCAGTGCTCCTAACCGCTGCGCTATCTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTCGGGCAGAGAAGGCAGTGCTCCTAACCGCTGCGCTATCTCTA  700

seq1  TGGCACCTACTAGAATCATTTAAAGGAAGCAATGGAAAGGTTGCTTTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCTACTAGAATCATTTAAAGGAAGCAATGGAAAGGTTGCTTTACC  750

seq1  TTGGTGACTTCTTTTGTACTTTTTCTGAAAGCGTCATTATAGTTGCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGACTTCTTTTGTACTTTTTCTGAAAGCGTCATTATAGTTGCTGAG  800

seq1  CAGCACTGAGTGGCAAGCTAGGCGCCCTTACATGACTCCTGGGCTCTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGAGTGGCAAGCTAGGCGCCCTTACATGACTCCTGGGCTCTCAT  850

seq1  TCCTTCCTCTTTCAAGGTTACCAAGCTCGGAC-AAGGATGACTGAGTAGT  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCTTCCTCTTTCAAGGTTACCAAGCTCGGACAAAGGATGACTGAGTAGT  900

seq1  CAGTTATCTAGACTCGTGATCTTGAGCTGTTTCAGCTCTTAATACACAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATCTAGACTCGTGATCTTGAGCTGTTTCAGCTCTTAATACACAAT  950

seq1  -GGCCCCAATGGCAGGCAACTCCATCAACTCTGTTTCACTTTGAGTCGAA  998
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGCCCCAATGGCAGGCAACTCCATC-ACTCTGTTTCACTTTGAGTCGAA  999

seq1  CGGAACTTTTTGTTTGGGCTCACTGCGCATGAGGCTAAAGTGTCTGGGTT  1048
      ||||   ||||||||||||||||||||||||| |||||||||||||||||
seq2  CGGA--CTTTTGTTTGGGCTCACTGCGCATGA-GCTAAAGTGTCTGGGTT  1046

seq1  TGG-CACTGTTTCTTTCCATGGTTGGTGATGGAGAATATAAGCAGTATGC  1097
      ||| |||||||||||| ||| ||||||||| |||||||||||||| ||||
seq2  TGGCCACTGTTTCTTT-CAT-GTTGGTGAT-GAGAATATAAGCAG-ATGC  1092

seq1  TTGTTTCTGTGTTCTTTCAATGTCTT-GTACATAGTGAGTGTGGACCTGT  1146
       ||||||||||||||    ||||||| ||||||||||   ||||| ||||
seq2  -TGTTTCTGTGTTCT---CATGTCTTGGTACATAGTGGAGGTGGA-CTGT  1137

seq1  AGAGATGC  1154
       |||||||
seq2  -GAGATGC  1144

seq1: chr17_67438607_67439716
seq2: B6Ng01-254P03.g_70_1185 (reverse)

seq1  CTAGTGGTGGTTGTGATAAG-CAAGCAGCAGCCACC--AGAGGTGTGACA  47
      |||||||| ||||||||||| || ||||||||||||  ||||||||||||
seq2  CTAGTGGT-GTTGTGATAAGCCAGGCAGCAGCCACCCAAGAGGTGTGACA  49

seq1  ATGCCTGATCAGAAGAGGTGCCTATCTTTGATTG-TCAAAT-ACAAGTTG  95
      ||  |||||||||||||||||||||||||||||| |||||| ||||||||
seq2  ATTGCTGATCAGAAGAGGTGCCTATCTTTGATTGTTCAAATAACAAGTTG  99

seq1  AGAATGAGATTTACAGATGTAGCAAGTTT-TGAAAAAAAAAAATGAAGAG  144
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  AGAATGAGATTTACAGATGTAGCAAGTTTGAAAAAAAAAAAAATGAAGAG  149

seq1  ACA-GGGTGTGAAGATAAAAAAAAAGACCATCACACAAATTCCAAAGCCT  193
      ||| ||||||  |||| |||||||||||||||||||||||||||||||||
seq2  ACAGGGGTGTTGAGAT-AAAAAAAAGACCATCACACAAATTCCAAAGCCT  198

seq1  CCTGGATGCCGGTCCATGTCAATAGTGAGGCGAGAGGCTCCTCGGTTCAC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATGCCGGTCCATGTCAATAGTGAGGCGAGAGGCTCCTCGGTTCAC  248

seq1  ACTGGTCTCTT-AAACCAGACTGTTCATCTTGTTAAAGAGCAGGATGCAG  292
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTCTTAAAACCAGACTGTTCATCTTGTTAAAGAGCAGGATGCAG  298

seq1  AGTCTGGGGCTGATGCCTAGACTCGCATTCATGCTAGAGGCAGAGTTGTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGGCTGATGCCTAGACTCGCATTCATGCTAGAGGCAGAGTTGTA  348

seq1  CCTCACTTTTATATCCCATTCTGCACTTGTCCCAAAGGCAGGAAGTGGGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTTTATATCCCATTCTGCACTTGTCCCAAAGGCAGGAAGTGGGT  398

seq1  TAACTGTCCTGCACTTAGAGCAAGGGCCACAGCCAAGGAATTCAGTGACT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTCCTGCACTTAGAGCAAGGGCCACAGCCAAGGAATTCAGTGACT  448

seq1  AGAGGATGTGGTGTTTTTTTCAGGTGCCTGTGAAACCTACATTTCCCAAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATGTGGTGTTTTTTTCAGGTGCCTGTGAAACCTACATTTCCCAAG  498

seq1  CGTGCTTCAGGGAGCAACAGGCTCCCGAGGTACTCTGCCAACACCAGGGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTTCAGGGAGCAACAGGCTCCCGAGGTACTCTGCCAACACCAGGGC  548

seq1  TGATGCCAGACTCCAGCTGGGACCGCACCTGCCCTGTCCCCTCCTGGAGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCAGACTCCAGCTGGGACCGCACCTGCCCTGTCCCCTCCTGGAGA  598

seq1  CTCAGAGATACACCTGGGTCCCAAGACAGCCTACAGAACAAGACTTAGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGATACACCTGGGTCCCAAGACAGCCTACAGAACAAGACTTAGTT  648

seq1  CACCTCTGCCTAAGTGTCATTGACCAACCAATGCCTCCTGCAGCTGTTGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGCCTAAGTGTCATTGACCAACCAATGCCTCCTGCAGCTGTTGG  698

seq1  AGTCACTGAGCAGCATTCTGAAAACCCCTCCTCTTGGTAGCTGTGGCACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGAGCAGCATTCTGAAAACCCCTCCTCTTGGTAGCTGTGGCACA  748

seq1  CAGGCTGCTGGGAACTTGCAAATTTTTTGAGAGTAAAGGAATGGTCTTCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGCTGGGAACTTGCAAATTTTTTGAGAGTAAAGGAATGGTCTTCT  798

seq1  GGCAAGCACAGTGTACAAGGCTTGGCAGCTGTATGGAAGATAGTAGTTGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCACAGTGTACAAGGCTTGGCAGCTGTATGGAAGATAGTAGTTGA  848

seq1  GCCTAAAAGTGAAGTAGTGGGTAAGATCAGACAGGCCTAGTCCCTCAATT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAAGTGAAGTAGTGGGTAAGATCAGACAGGCCTAGTCCCTCAATT  898

seq1  CCTCATTTACCAGCAAAGCTGTCAGCTGGCAAACCGTAAATCTTGCTTTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTACCAGCAAAGCTGTCAGCTGGCAAACCGTAAATCTTGCTTTA  948

seq1  GCCTCCCCCCACTTACTTAAGTAGAGCCCAATCTTCTGCCAGGGCCTTCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCCCCACTTACTTAAGTAGAGCCCAATCTTCTGCCAGGGCCTTCA  998

seq1  GCTCACCTAGGGAATCTGATTCAACAGGGAGGTATCCGTGAATCAGCAGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTAGGGAATCTGATTCAACAGGGAGGTATCCGTGAATCAGCAGC  1048

seq1  CTCTCTGTTCGATGGCTCCATCTCCGCTCCCTCCTACCTTTTTATGGAGC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTTCGATGGCTCCATCTCCGCTCCCTCCTACCTTTTTATGGAGC  1098

seq1  CGTCTGGGGAAGGAATTC  1110
      ||||||||||||||||||
seq2  CGTCTGGGGAAGGAATTC  1116