BAC Information

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BAC

Clone NameB6Ng01-256H03
Chromosome17 (Build37)
Map Location 45,598,133 - 45,825,001
singlet/doubletdoublet
Overlap geneSpats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l
Downstream geneLOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256H03.bB6Ng01-256H03.g
ACCGA062403GA062404
length1,165470
definitionB6Ng01-256H03.b B6Ng01-256H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,823,839 - 45,825,001)(45,598,133 - 45,598,608)
sequence
gaattctactattctaaaaaaaataataaagtgggagtctgagcctctga
gctcctgaacccgtttctcaagtagcacgctgttataggatatatgccgc
agttagatgtccagaatcctggatgatgcaaaagtccttaatcttggttt
tggagggctttgtgccaccacaggtgtgccaccattaccaccagccccat
caaaacctgtttcctcaatacagcttctcagtgacagccccaggcagtct
acagcggcagacgcagctccatcttctttcccttaccaccaccaaaatcc
tcaaagttggggaatttgtatgtttggtttgatttgttgagacttggtgt
caggcaatctcaagctggccttacacacccaaagcagctaaggatggcct
tgacatccttaacggctacctacatctaggattacgggcaaaccccactg
atggccaattccaatgtgctcattactagtactatcaactgcatcttcag
aggatttaactgactaaaaactcaagctaaggaaagcgagaggtatacaa
gagatcaatactttcccaaacttttctacaacacacagaaacagtagaag
acacctaatacacccccatgcccttgtgtcccaagacagaatacctactg
taggcgcaacacacacacacacacacacacacacacacacacacacacga
tggccatgatctactaaactgatttccaagccactcatgggagtgtctga
aagacacttcaacagaccaaatcttagagctgcaaacccccagctacaaa
acgagcagctgaatagccacatacagcaaacacagtgaccaggatggtag
tgtccagtcgtgatgcaagaccctccctgggtgccaccatttcccaagta
atccaaaggtgatcccgtctcgcctcttgtgaccgctacacagttcctca
tctaagtctcagcgtgtaaagctcacttactgcgtacagcgggaagcagt
atttcttctgtcccctttaagacctcgaaattcaccaggtgtatcctgtc
gtgtctttgtatttcgagaatggtggtgggtgaacataacaggaaaaggg
cgttcaactcttcacttctcaagtcttaaccatcgctatagagaggtctt
tggtgaactggagaa
ctcgggatatttttcctttgggatttcaggcagcgaaacttttgaggaac
gattagactgagcagaggaagaggaggaagacgaagaggaggaggtcttc
tgacccagctccgcagccgtgctggaaggcaagtggaagggttagagtca
tcactgtgctcaaaccagagtctgtgccagccagactctgatcttctact
catagtacatgagtcctcatccaacaggactggcctcgcttctctataaa
gtccctgagtgtggtttactgactcacagcttggaggttcctattcaaaa
gatgtgcactttaaaacagtcaggtaaaggtgtttgctgcacagccggag
aacctgagtttgatccctggtaacatgtgtggcagaaggagagaacaaac
tcctgtgaatatcctgtagcctccaggcatacactgtgtcacacgatgga
tggatggatgggtgggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45823839_45825001
seq2: B6Ng01-256H03.b_46_1210 (reverse)

seq1  TTCT-CAGTTCACCAAAGACCTCTCCTAGTGGGGGGGTGGGGTTAAGACT  49
      |||| ||||||||||||||||||| |||  | |       ||||||||||
seq2  TTCTCCAGTTCACCAAAGACCTCT-CTATAGCG-----ATGGTTAAGACT  44

seq1  TGAGAGTTGGAGAGGTGGAACGCCCCTTTTCTG-TATGT-----CACCAC  93
      |||||  || ||| || |||||||| ||| ||| |||||     ||||||
seq2  TGAGAAGTGAAGA-GTTGAACGCCCTTTTCCTGTTATGTTCACCCACCAC  93

seq1  ACATCTCG-AATACAAAGACACGACA-GATACCACCTGTTAAATTTCGAG  141
         ||||| ||||||||||||||||| |||| |||||| | |||||||||
seq2  CATTCTCGAAATACAAAGACACGACAGGATA-CACCTGGTGAATTTCGAG  142

seq1  GTCTTAAAGGGGACAGAAGAAATACTGCTTCCCGCTGTACGCAGTAAGTG  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAGGGGACAGAAGAAATACTGCTTCCCGCTGTACGCAGTAAGTG  192

seq1  AGCTTTACACGCTGAGACTTAGATGAGGAACTGTGTAGCGGTCACAAGAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTACACGCTGAGACTTAGATGAGGAACTGTGTAGCGGTCACAAGAG  242

seq1  GCGAGACGGGATCACC-TTGGATTACTTGGGAAATGGTGGCACCCAGGGA  290
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCGAGACGGGATCACCTTTGGATTACTTGGGAAATGGTGGCACCCAGGGA  292

seq1  GGGTCTTGCATCACGACTGGACACTACCATCCTGGTCACTGTGTTTGCTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGCATCACGACTGGACACTACCATCCTGGTCACTGTGTTTGCTG  342

seq1  TATGTGGCTATTCAGCTGCTCGTTTTGTAGCTGGGGGTTTGCAGCTCTAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGCTATTCAGCTGCTCGTTTTGTAGCTGGGGGTTTGCAGCTCTAA  392

seq1  GATTTGGTCTGTTGAAGTGTCTTTCAGACACTCCCATGAGTGGCTTGGAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGTCTGTTGAAGTGTCTTTCAGACACTCCCATGAGTGGCTTGGAA  442

seq1  ATCAGTTTAGTAGATCATGGCCATCGTGTGTGTGTGTGTGTGTGTGTGTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTAGTAGATCATGGCCATCGTGTGTGTGTGTGTGTGTGTGTGTG  492

seq1  TGTGTGTGTGTGTGTTGCGCCTACAGTAGGTATTCTGTCTTGGGACACAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTTGCGCCTACAGTAGGTATTCTGTCTTGGGACACAA  542

seq1  GGGCATGGGGGTGTATTAGGTGTCTTCTACTGTTTCTGTGTGTTGTAGAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGGGGTGTATTAGGTGTCTTCTACTGTTTCTGTGTGTTGTAGAA  592

seq1  AAGTTTGGGAAAGTATTGATCTCTTGTATACCTCTCGCTTTCCTTAGCTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGGGAAAGTATTGATCTCTTGTATACCTCTCGCTTTCCTTAGCTT  642

seq1  GAGTTTTTAGTCAGTTAAATCCTCTGAAGATGCAGTTGATAGTACTAGTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTAGTCAGTTAAATCCTCTGAAGATGCAGTTGATAGTACTAGTA  692

seq1  ATGAGCACATTGGAATTGGCCATCAGTGGGGTTTGCCCGTAATCCTAGAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACATTGGAATTGGCCATCAGTGGGGTTTGCCCGTAATCCTAGAT  742

seq1  GTAGGTAGCCGTTAAGGATGTCAAGGCCATCCTTAGCTGCTTTGGGTGTG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAGCCGTTAAGGATGTCAAGGCCATCCTTAGCTGCTTTGGGTGTG  792

seq1  TAAGGCCAGCTTGAGATTGCCTGACACCAAGTCTCAACAAATCAAACCAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCAGCTTGAGATTGCCTGACACCAAGTCTCAACAAATCAAACCAA  842

seq1  ACATACAAATTCCCCAACTTTGAGGATTTTGGTGGTGGTAAGGGAAAGAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAAATTCCCCAACTTTGAGGATTTTGGTGGTGGTAAGGGAAAGAA  892

seq1  GATGGAGCTGCGTCTGCCGCTGTAGACTGCCTGGGGCTGTCACTGAGAAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCTGCGTCTGCCGCTGTAGACTGCCTGGGGCTGTCACTGAGAAG  942

seq1  CTGTATTGAGGAAACAGGTTTTGATGGGGCTGGTGGTAATGGTGGCACAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGAGGAAACAGGTTTTGATGGGGCTGGTGGTAATGGTGGCACAC  992

seq1  CTGTGGTGGCACAAAGCCCTCCAAAACCAAGATTAAGGACTTTTGCATCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGGCACAAAGCCCTCCAAAACCAAGATTAAGGACTTTTGCATCA  1042

seq1  TCCAGGATTCTGGACATCTAACTGCGGCATATATCCTATAACAGCGTGCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATTCTGGACATCTAACTGCGGCATATATCCTATAACAGCGTGCT  1092

seq1  ACTTGAGAAACGGGTTCAGGAGCTCAGAGGCTCAGACTCCCACTTTATTA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAAACGGGTTCAGGAGCTCAGAGGCTCAGACTCCCACTTTATTA  1142

seq1  TTTTTTTTAGAATAGTAGAATTC  1163
      |||||||||||||||||||||||
seq2  TTTTTTTTAGAATAGTAGAATTC  1165

seq1: chr17_45598133_45598608
seq2: B6Ng01-256H03.g_63_538

seq1  GAATTCCTCGGGATATTTTTCCTTTGGGATTTCAGGCAGCGAAACTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGGGATATTTTTCCTTTGGGATTTCAGGCAGCGAAACTTTTG  50

seq1  AGGAACGATTAGACTGAGCAGAGGAAGAGGAGGAAGACGAAGAGGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACGATTAGACTGAGCAGAGGAAGAGGAGGAAGACGAAGAGGAGGAG  100

seq1  GTCTTCTGACCCAGCTCCGCAGCCGTGCTGGAAGGCAAGTGGAAGGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGACCCAGCTCCGCAGCCGTGCTGGAAGGCAAGTGGAAGGGTTA  150

seq1  GAGTCATCACTGTGCTCAAACCAGAGTCTGTGCCAGCCAGACTCTGATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATCACTGTGCTCAAACCAGAGTCTGTGCCAGCCAGACTCTGATCT  200

seq1  TCTACTCATAGTACATGAGTCCTCATCCAACAGGACTGGCCTCGCTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCATAGTACATGAGTCCTCATCCAACAGGACTGGCCTCGCTTCTC  250

seq1  TATAAAGTCCCTGAGTGTGGTTTACTGACTCACAGCTTGGAGGTTCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTCCCTGAGTGTGGTTTACTGACTCACAGCTTGGAGGTTCCTAT  300

seq1  TCAAAAGATGTGCACTTTAAAACAGTCAGGTAAAGGTGTTTGCTGCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGATGTGCACTTTAAAACAGTCAGGTAAAGGTGTTTGCTGCACAG  350

seq1  CCGGAGAACCTGAGTTTGATCCCTGGTAACATGTGTGGCAGAAGGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGAACCTGAGTTTGATCCCTGGTAACATGTGTGGCAGAAGGAGAGA  400

seq1  ACAAACTCCTGTGAATATCCTGTAGCCTCCAGGCATACACTGTGTCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCCTGTGAATATCCTGTAGCCTCCAGGCATACACTGTGTCACAC  450

seq1  GATGGATGGATGGATGGGTGGGTGGG  476
      ||||||||||||||||||||||||||
seq2  GATGGATGGATGGATGGGTGGGTGGG  476