BAC Information

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BAC

Clone NameB6Ng01-257N17
Chromosome6 (Build37)17 (Build37)
Map Location 128,380,926 - 128,381,68231,138,482 - 31,138,746
singlet/doubletsingletsinglet
Overlap geneFkbp4
Upstream geneParp11, Efcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2
Downstream geneEG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257N17.bB6Ng01-257N17.g
ACCGA063446GA063447
length757247
definitionB6Ng01-257N17.b B6Ng01-257N17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(128,380,926 - 128,381,682)(31,138,482 - 31,138,746)
sequence
gaattcctaagcaagacactttccaacacgagaaattgcataggcacagc
aatcctgcacctgtttacagcagctgcacacacatgcgcgttctgaactg
acgagtccattcagcacactactgctggatgtcagagatttcggaaacta
ttttctctttgtgcttctgggactgacctgagggtcttgagtgtgcttgg
caagcactctactattgtgctatatcctagagcagtcaacaatgttcttt
aatggtgatcccatgtttcttcagtggtactaagtcctaaggatatatca
gcacaggccctgcccagcaaggacatatatcacagagttttgaggttttc
tgttcccatttctttatatgctaactaaaatctttttttttttttttttt
ttttttttttggttttttgagacagggtttctctgtgtagccctggttat
cctggaactcactctgtagaccaggctggcctcgaactcagaaatctgcc
tgcctctgcctcccgtgtgctgggagtaaaggggtgcgccaccaccgccc
ggccaaaatctttttcaaaactatatagaacatattaaatcactattcaa
ttccaccttttacatgtggctacaaagttagtatgctttgtaatctaatt
ctcttgggcagcattaaggacactgaaacaatgggtactgtggctttagg
aacactgaagcaatgggtactgtaagatatgctctttttgtgaggcgaca
acgcaca
caggacagccacagccagggctatacagagaaaccctgtctcagaaaacc
aaaaaaaaaaaaaaaaaaatcagttgtgggagctggaaagatgactcagg
gattaagagcactgactgcccttctaggggtcctgagttcaattcccagc
aaccacgtggtggctcacaaccatctgttatggattccaatgccctcttc
tggtgtgtctgaggacagctacagtgtactcatatgcatataataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_128380926_128381682
seq2: B6Ng01-257N17.b_46_802

seq1  GAATTCCTAAGCAAGACACTTTCCAACACGAGAAATTGCATAGGCACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGCAAGACACTTTCCAACACGAGAAATTGCATAGGCACAGC  50

seq1  AATCCTGCACCTGTTTACAGCAGCTGCACACACATGCGCGTTCTGAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGCACCTGTTTACAGCAGCTGCACACACATGCGCGTTCTGAACTG  100

seq1  ACGAGTCCATTCAGCACACTACTGCTGGATGTCAGAGATTTCGGAAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTCCATTCAGCACACTACTGCTGGATGTCAGAGATTTCGGAAACTA  150

seq1  TTTTCTCTTTGTGCTTCTGGGACTGACCTGAGGGTCTTGAGTGTGCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTGTGCTTCTGGGACTGACCTGAGGGTCTTGAGTGTGCTTGG  200

seq1  CAAGCACTCTACTATTGTGCTATATCCTAGAGCAGTCAACAATGTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTCTACTATTGTGCTATATCCTAGAGCAGTCAACAATGTTCTTT  250

seq1  AATGGTGATCCCATGTTTCTTCAGTGGTACTAAGTCCTAAGGATATATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGATCCCATGTTTCTTCAGTGGTACTAAGTCCTAAGGATATATCA  300

seq1  GCACAGGCCCTGCCCAGCAAGGACATATATCACAGAGTTTTGAGGTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCCCTGCCCAGCAAGGACATATATCACAGAGTTTTGAGGTTTTC  350

seq1  TGTTCCCATTTCTTTATATGCTAACTAAAATCTTTTTTTTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCATTTCTTTATATGCTAACTAAAATCTTTTTTTTTTTTTTTTTT  400

seq1  TTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGTTAT  450

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCC  500

seq1  TGCCTCTGCCTCCCGTGTGCTGGGAGTAAAGGTGTGCGCCACCACCGCCC  550
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCCTCTGCCTCCCGTGTGCTGGGAGTAAAGGGGTGCGCCACCACCGCCC  550

seq1  GGCCAAAATCTTTTTCAAAACTATATAGAACATATTAAATCACTATTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAATCTTTTTCAAAACTATATAGAACATATTAAATCACTATTCAA  600

seq1  TTCCACCTTTTACATGTGGCTACAAAGTTAGTATGCTTTGTAATCTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCCACCTTTTACATGTGGCTACAAAGTTAGTATGCTTTGTAATCTAATT  650

seq1  CTCTTGGGCAGCATTAGGGACACTGAAGCAATGGGTACTGTGGCTTTAGG  700
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CTCTTGGGCAGCATTAAGGACACTGAAACAATGGGTACTGTGGCTTTAGG  700

seq1  AACACTGAAGCAATGGGTACTGTAAGATATGCTCTGTATGTGAGGCGACA  750
      ||||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  AACACTGAAGCAATGGGTACTGTAAGATATGCTCTTTTTGTGAGGCGACA  750

seq1  ACGCACA  757
      |||||||
seq2  ACGCACA  757

seq1: chr17_31138482_31138746
seq2: B6Ng01-257N17.g_175_319 (reverse)

seq1  TTTATTTTATGTATATGAGTACACTGTAGCTGTACTAATGATTGTGAGCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATCATGTGCTTGCTGGGAATGAAGGTTGCTCACTTCGATCAGGCCCCATT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTCCTGCCTAAAGATTTATTTATTAT-TATATCTAAGTCCACTTCCGC  149
                          |||||||| |  || | ||| ||||   ||
seq2  --------------------TTTATTATATGCATATGAGTACACTGTAGC  30

seq1  TGTCTACAGACACACCAGAAGAAGGCATGGGATCCCCATTACAGATGGTT  199
      ||||  |||||||||||||||| ||||| |||   |||| ||||||||||
seq2  TGTCCTCAGACACACCAGAAGAGGGCATTGGA-ATCCATAACAGATGGTT  79

seq1  GTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTCGGAAGAG  249
      ||||||||||| ||||||||||||||||||||||||||||    |||| |
seq2  GTGAGCCACCACGTGGTTGCTGGGAATTGAACTCAGGACCCCTAGAAGGG  129

seq1  CAGTCAGTGCTCTTAA  265
      ||||||||||||||||
seq2  CAGTCAGTGCTCTTAA  145