BAC Information

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BAC

Clone NameB6Ng01-258B04
Chromosome17 (Build37)
Map Location 91,067,672 - 91,167,751
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043906
Downstream geneEG668871, LOC668872, LOC627235, LOC100043741, LOC100043742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258B04.bB6Ng01-258B04.g
ACCGA063605GA063606
length1,1551,131
definitionB6Ng01-258B04.b B6Ng01-258B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,166,587 - 91,167,751)(91,067,672 - 91,068,824)
sequence
gaattcagcttcttgacagctacatttttcagccccacagtctcatactg
tggtatttcactggtttctcagtagcctgccctgggggaacagggccatt
cttttgtttgtccttgtgaagaatttcctgcctaccactaatttgctgtg
ctgtaaaagctaccttatttacaattaaatgaaactgagttagtaatcct
aactcagtagaggactttgataaagcccctgggagtgttgacattgtcac
cagcttttatttattattatttttttttttttgcttttgttttgggatct
ttccttttaattctttgtggagatttaactgttatctcttagttatacct
ttttactaagagagaattttaaaaaggtatagtaagactcctaggagcct
tagctcaccaggggccccgctgagtgaagcacgtggtgccgggatcgatg
caaaaagaaagaggaatatattgttccagtgcactggggtcatcccagac
ccgaaggagaggcggtgaccactagcactggtcagcgagtttttatatgg
tttccagggggagaatagagcatcagcaatggggcacaatatgattggtg
gaacaatgcaccctttaaactgattggtctttaggggacgaggtgacaag
tacttcccttatctgaaggtaggcaagagtccatcctgcgaaatgtttcc
ccacctgcagtcggttcctccctgttgtctgagaaatgttaacctgcctc
tccctcccagagcagcaagtgtttcacgaccttcccaaagttccaaagct
gaccttttcagtattttgaaagaggcattcaattagaaacaatagagaat
tctgaaaataaccatgtgattattttgaacaatgcaaaagtaactgtaac
agcaacaatgaacaaacactgtgttatattgtgtgattttgtgcatcaaa
agactgccagcatacacgataagtaccgaaaagaagaaaagagttgaaaa
aacctgacttttgttagagggttcaaaattacagttggcacccacttgga
aggcatgaatattgtacagtgctgatgcatgcctgagctagtggatccat
gcttttcatttctgtggatgtcacaatagtaagcttgaatgctgcgacaa
taagg
gaattcatgaaaacaaaattaaaaggactaagatgcaacttgagagaatt
ccaacagaagtctgagaatatggccaaataactgactaaattatactaat
tgatggttacataacttgaaaatagagcagtcccttaatttaaaaatagt
gcagaggaaaaatctgtggcatattaaatgaatagattcatggattttat
gtattaggtttttcgactttctttgtgtatatctgaaacctatgaagtag
aaatacataaaattatggtactaccttgggtctcaacaggagcaggttgg
tccattttgtgagtatctgtgagtgcccgtgtattgcattattgaggagg
ggttttctgagaatttcttttcttaacttgaaagaagaacttcagatagc
ttgattgctaatgtgttccttattaaagacactgtttcatataacctagg
ctggctaccaactcactacttaggctaggatgaccttgaacttcggattt
tttttttaactccaccttaaggtactcaaattacaggtgcgcacgcacca
ccagttcatgagaatttgatggtcttacttgatacctaagcaatctgtca
actgactgacatctttatgccaagggaaataatttgaaattgctctttat
tatccatacatattcaaaaggaaaatgtcatgatttttagaaaacaaaac
aaacaaaacaaaatgatcagcatgaatctggaggttgctgaatatcacag
acagatgggtagttgtgaataagtcacgatgttacagctaagctgactta
tatttactaacttggttatagtaactgaattatccaacaacattagtttt
ttagaagctgtacactaggacatgctgtcttaagaaaaagagtgaaattc
actctagtatattgtgttagagaagttacaacttttctaatgaaaaatac
agcaaatttatgacttttttttattcccacacaaaccatagagacttttt
ttttatgtcttgaaactttgtttgagcatatatattcttttgtggtggtc
agctaagattcaccaggtaaagtagatagtgattcaatatgcttttctac
tgcttaataatatgacccttaaagtagtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_91166587_91167751
seq2: B6Ng01-258B04.b_45_1199 (reverse)

seq1  CCTTATTGTCTGCAGCA-TCAAGCTTACTAATTGTGACATCACAAGAAAA  49
      |||||||||| |||||| ||||||||||| ||||||||||| ||   |||
seq2  CCTTATTGTC-GCAGCATTCAAGCTTACT-ATTGTGACATC-CACAGAAA  47

seq1  TGAAAAACCATGGATCCAACCTAGCTCAGGCATGCATTCAGCACTTGTAC  99
      || |||| ||||||||||  |||||||||||||||| ||||||| |||||
seq2  TG-AAAAGCATGGATCCA--CTAGCTCAGGCATGCA-TCAGCAC-TGTAC  92

seq1  AATATTCATGCCCTTCCAAGTTGGGTTGCCAACTGTAATTTTGAACCCTC  149
      |||||||||| ||||||||||  || ||||||||||||||||||||||||
seq2  AATATTCATG-CCTTCCAAGT--GGGTGCCAACTGTAATTTTGAACCCTC  139

seq1  TAACAAAAGTCAGGTTTTTTCAACTC-TTTCTTCTTTTCGGTACTTATCG  198
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAACAAAAGTCAGGTTTTTTCAACTCTTTTCTTCTTTTCGGTACTTATCG  189

seq1  TGTATGCTTGGCAGTCTTTTGATGCACAAAATCACACAATATAACACAGT  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGC-TGGCAGTCTTTTGATGCACAAAATCACACAATATAACACAGT  238

seq1  GTTTGTTCATTGTTGCTGTTACAGTTACTTTTGCATTGTTCAAAATAATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCATTGTTGCTGTTACAGTTACTTTTGCATTGTTCAAAATAATC  288

seq1  ACATGGTTATTTTCAGAATTCTCTATTGTTTCTAATTGAATGCCTCTTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTATTTTCAGAATTCTCTATTGTTTCTAATTGAATGCCTCTTTC  338

seq1  AAAATACTGAAAAGGTCAGCTTTGGAACTTTGGGAAGGTCGTGAAACACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTGAAAAGGTCAGCTTTGGAACTTTGGGAAGGTCGTGAAACACT  388

seq1  TGCTGCTCTGGGAGGGAGAGGCAGGTTAACATTTCTCAGACAACAGGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTCTGGGAGGGAGAGGCAGGTTAACATTTCTCAGACAACAGGGAG  438

seq1  GAACCGACTGCAGGTGGGGAAACATTTCGCAGGATGGACTCTTGCCTACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGACTGCAGGTGGGGAAACATTTCGCAGGATGGACTCTTGCCTACC  488

seq1  TTCAGATAAGGGAAGTACTTGTCACCTCGTCCCCTAAAGACCAATCAGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATAAGGGAAGTACTTGTCACCTCGTCCCCTAAAGACCAATCAGTT  538

seq1  TAAAGGGTGCATTGTTCCACCAATCATATTGTGCCCCATTGCTGATGCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTGCATTGTTCCACCAATCATATTGTGCCCCATTGCTGATGCTC  588

seq1  TATTCTCCCCCTGGAAACCATATAAAAACTCGCTGACCAGTGCTAGTGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCCCCCTGGAAACCATATAAAAACTCGCTGACCAGTGCTAGTGGT  638

seq1  CACCGCCTCTCCTTCGGGTCTGGGATGACCCCAGTGCACTGGAACAATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCCTCTCCTTCGGGTCTGGGATGACCCCAGTGCACTGGAACAATAT  688

seq1  ATTCCTCTTTCTTTTTGCATCGATCCCGGCACCACGTGCTTCACTCAGCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTTTCTTTTTGCATCGATCCCGGCACCACGTGCTTCACTCAGCG  738

seq1  GGGCCCCTGGTGAGCTAAGGCTCCTAGGAGTCTTACTATACCTTTTTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCTGGTGAGCTAAGGCTCCTAGGAGTCTTACTATACCTTTTTAAA  788

seq1  ATTCTCTCTTAGTAAAAAGGTATAACTAAGAGATAACAGTTAAATCTCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCTTAGTAAAAAGGTATAACTAAGAGATAACAGTTAAATCTCCA  838

seq1  CAAAGAATTAAAAGGAAAGATCCCAAAACAAAAGCAAAAAAAAAAAAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATTAAAAGGAAAGATCCCAAAACAAAAGCAAAAAAAAAAAAATA  888

seq1  ATAATAAATAAAAGCTGGTGACAATGTCAACACTCCCAGGGGCTTTATCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATAAAAGCTGGTGACAATGTCAACACTCCCAGGGGCTTTATCA  938

seq1  AAGTCCTCTACTGAGTTAGGATTACTAACTCAGTTTCATTTAATTGTAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTCTACTGAGTTAGGATTACTAACTCAGTTTCATTTAATTGTAAA  988

seq1  TAAGGTAGCTTTTACAGCACAGCAAATTAGTGGTAGGCAGGAAATTCTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGCTTTTACAGCACAGCAAATTAGTGGTAGGCAGGAAATTCTTC  1038

seq1  ACAAGGACAAACAAAAGAATGGCCCTGTTCCCCCAGGGCAGGCTACTGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGACAAACAAAAGAATGGCCCTGTTCCCCCAGGGCAGGCTACTGAG  1088

seq1  AAACCAGTGAAATACCACAGTATGAGACTGTGGGGCTGAAAAATGTAGCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTGAAATACCACAGTATGAGACTGTGGGGCTGAAAAATGTAGCT  1138

seq1  GTCAAGAAGCTGAATTC  1165
      |||||||||||||||||
seq2  GTCAAGAAGCTGAATTC  1155

seq1: chr17_91067672_91068824
seq2: B6Ng01-258B04.g_67_1197

seq1  GAATTCATGAAAACAAAATTAAAAGGACTAAGATGCAACTTGAGAGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAAACAAAATTAAAAGGACTAAGATGCAACTTGAGAGAATT  50

seq1  CCAACAGAAGTCTGAGAATATGGCCAAATAACTGACTAAATTATACTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGAAGTCTGAGAATATGGCCAAATAACTGACTAAATTATACTAAT  100

seq1  TGATGGTTACATAACTTGAAAATAGAGCAGTCCCTTAATTTAAAAATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTACATAACTTGAAAATAGAGCAGTCCCTTAATTTAAAAATAGT  150

seq1  GCAGAGGAAAAATCTGTGGCATATTAAATGAATAGATTCATGGATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAAAAATCTGTGGCATATTAAATGAATAGATTCATGGATTTTAT  200

seq1  GTATTAGGTTTTTCGACTTTCTTTGTGTATATCTGAAACCTATGAAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGGTTTTTCGACTTTCTTTGTGTATATCTGAAACCTATGAAGTAG  250

seq1  AAATACATAAAATTATGGTACTACCTTGGGTCTCAACAGGAGCAGGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATAAAATTATGGTACTACCTTGGGTCTCAACAGGAGCAGGTTGG  300

seq1  TCCATTTTGTGAGTATCTGTGAGTGCCCGTGTATTGCATTATTGAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTGTGAGTATCTGTGAGTGCCCGTGTATTGCATTATTGAGGAGG  350

seq1  GGTTTTCTGAGAATTTCTTTTCTTAACTTGAAAGAAGAACTTCAGATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTGAGAATTTCTTTTCTTAACTTGAAAGAAGAACTTCAGATAGC  400

seq1  TTGATTGCTAATGTGTTCCTTATTAAAGACACTGTTTCATATAACCTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCTAATGTGTTCCTTATTAAAGACACTGTTTCATATAACCTAGG  450

seq1  CTGGCTACCAACTCACTACTTAGGCTAGGATGACCTTGAACTTCGGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTACCAACTCACTACTTAGGCTAGGATGACCTTGAACTTCGGATTT  500

seq1  TTTTTTTAACTCCACCTTAAGGTACTCAAATTACAGGTGCGCACGCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAACTCCACCTTAAGGTACTCAAATTACAGGTGCGCACGCACCA  550

seq1  CCAGTTCATGAGAATTTGATGGTCTTACTTGATACCTAAGCAATCTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCATGAGAATTTGATGGTCTTACTTGATACCTAAGCAATCTGTCA  600

seq1  ACTGACTGACATCTTTATGCCAAGGGAAATAATTTGAAATTGCTCTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGACATCTTTATGCCAAGGGAAATAATTTGAAATTGCTCTTTAT  650

seq1  TATCCATACATATTCAAAAGGAAAATGTCATGATTTTTAGAAAACAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATACATATTCAAAAGGAAAATGTCATGATTTTTAGAAAACAAAAC  700

seq1  AAACAAAACAAAATGATCAGCATGAATCTGGAGGTTGCTGAATATCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAATGATCAGCATGAATCTGGAGGTTGCTGAATATCACAG  750

seq1  ACAGATGGGTAGTTGTGAATAAGTCAGGATGTTACAGCTAAGCTGACTTA  800
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAGATGGGTAGTTGTGAATAAGTCACGATGTTACAGCTAAGCTGACTTA  800

seq1  TATTTACTAACTTGGTTATAGTAACTGAATTATCCAACAACATTAGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTAACTTGGTTATAGTAACTGAATTATCCAACAACATTAGTTTT  850

seq1  TTAGAAGCTGTACACTAGGACATGCTGTCTTAAGAAAAAGAGTGAAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGCTGTACACTAGGACATGCTGTCTTAAGAAAAAGAGTGAAATTC  900

seq1  ACTCTAGTATATTGTGTTAGAGAAGTTACAACTTTTCTAATGAAAAAATA  950
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  ACTCTAGTATATTGTGTTAGAGAAGTTACAACTTTTCTAATGAAAAA--T  948

seq1  ACAGCAAAATTTATGAACTTTTTTTTATTCCCACACAAACCAATAAGAGA  1000
      ||||| ||||||||| ||||||||||||||||||||||||||   |||| 
seq2  ACAGC-AAATTTATG-ACTTTTTTTTATTCCCACACAAACCA--TAGAG-  993

seq1  ACTTTTTTTTTATGTCTTGGAAACTTTGTTTGAGCATTATATATTCTTTT  1050
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  ACTTTTTTTTTATGTCTT-GAAACTTTGTTTGAGCA-TATATATTCTTTT  1041

seq1  GTTGTTGTTCAGGCTAAAGATTTCACCCAGGTAAAGTAGATAGTTGGTTT  1100
      | || || ||| ||| |||| |||| ||||||||||||||||||     |
seq2  G-TGGTGGTCA-GCT-AAGA-TTCA-CCAGGTAAAGTAGATAGT---GAT  1083

seq1  TAAATATGGCTTTTCTACATGCCTAATAAAATTATGACCCTAAAAGTAGT  1150
      | ||||| |||||||||| ||| ||||||   ||||||||| ||||||||
seq2  TCAATAT-GCTTTTCTAC-TGCTTAATAA---TATGACCCTTAAAGTAGT  1128

seq1  TTT  1153
      |||
seq2  TTT  1131