BAC Information

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BAC

Clone NameB6Ng01-258G06
Chromosome17 (Build37)
Map Location 79,566,865 - 79,746,417
singlet/doubletdoublet
Overlap geneLOC383277, Cdc42ep3
Upstream geneLOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812
Downstream geneLOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258G06.bB6Ng01-258G06.g
ACCGA063840GA063841
length1,1571,117
definitionB6Ng01-258G06.b B6Ng01-258G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,566,865 - 79,568,020)(79,745,311 - 79,746,417)
sequence
gaattcctactaggtgttaggcattgaagcacccagtagggatacagtaa
agataatatgcagtctctatcatctgagggcctagcaggttagaaaaaca
cagaagttagctgagccccatgctaaggaatggaagcaggtacagcggtg
gcaggagacacagagaaaggctatctagtgccacctgaggattgctctgt
gattcgttcctggccagtaactgtgtgccttggcatcaggggtgcaaagg
tgaatgggtgagctttggccctcggccgcaggatattggagtctgacagt
atagacagatataaacaattcaatagaaatatgtgttgtaaatagttggc
tcatgcaagagtgaaaattaatgaccgatgagctgcttctttaatgcttt
gccatttgcaaagctctgaaagcacacattaccttgaccaggcatggtgg
cgttacctttaatctagactcaggcaggaggcagagataagtagatatct
gtgagtttgagcctgatctatatagggagttcaaggccagctacctaatg
ggataagacaacaaaaaaaagtaaataaacaaaaaaataaaaataaaacc
acccaaaacaacaatagcaaaaccaaacaaacgcatatgctgcctcattt
gatgtttgtgaagaggcagggtttatcatctgtccattgataaagaaacc
aagggttgaggtactgtgatttgtttcaggttggtatgtgaatcttcttg
ggttgtttataacaaaatgccctggactggtgactgaagcaatagctctc
tgttaaccctcccccaactctggatgctagtagtgtcacattaaactcat
gcaactttgcttctgtgagggcctcctttccagttttgtagatggctgcc
ttctccatctgtcctagcaaggctagggtagtggctgggaaggggagctt
gtagaccactgcttgtaactgtacaagccccattcttaagctcttattta
atcttcttaactttttcagatgcctcatctacaactctaacacaactgtt
ggttttcagcaacgtgaactgtagaggaacataaacggtcaggtgcatag
cattaggctgtgtgacttgagtcagtcctagttatcatttgtcaactgac
acagcct
gaattccagaggccttggcaacagggaagagctacagctgtagggctggg
cagcccctcggtttgcctgtgtggtcctgtgcagtcctatccccaggctg
taagggtgggcctgcctcttaagggttttaagattatgggtggattctag
gtaagaagagaaagaggagaggcaaatgcacgcacaacacggcaattgtg
ggggcgaatgaggagagattcagtgatagggttttagacttgacaggaga
atgaagccagggagaggttaaaatgatagctgggtttggccatttacaaa
gaaagagaagaaagcacagaaggccctcaccatggctagtcagagggagg
aaagatggagtttcccaggaaagcaaagtcgggaaccccagaatgcagga
aagaaacacagtgcttcacactctctgagaagagccactgctttgccttt
gacttcaattttcaatctgtggcagaattgatggaacttactgtgcacag
tgaaatctatgacccggaccccacacagcaagatcaacagtgcaaaaacc
ccagatttatcatcaaccacttcagtgagaaaagaaaacaccaaccatat
gcttggttgctatggcaatgtcaaaaaagtttctaagaccttactttcaa
tttctttacctatggactggtctggtccatggaccactttgaggggttct
agtctagacttaagtaggtctgtgtgagctgaagttgtcattagaaatgg
tagttgaagccttgtgcagggcgtgatgggggtggacaacaaagctttgt
agagatgcaagcatctaaagcaagggttcaaaccttttcagaaaggggtt
ttgatgctttgggccacatgcagtctctgctcaaggtatcaattctggca
gtcgtgattctgctgtggtctctcaacttcagccctattgaggctcaagg
gcctgatagttttctttggaggaccactagccactccttttccacctgag
tccacaggatttaaacattgtttttgtttacttgctaagagaagtgcaaa
agttacccctccgaggagaactgctgtcctattggagaagtacagaaaca
actctacggtcactggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_79566865_79568020
seq2: B6Ng01-258G06.b_44_1200

seq1  GAATTCCTACTAGGTGTTAGGCATTGAAGCACCCAGTAGGGATACAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTAGGTGTTAGGCATTGAAGCACCCAGTAGGGATACAGTAA  50

seq1  AGATAATATGCAGTCTCTATCATCTGAGGGCCTAGCAGGTTAGAAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATATGCAGTCTCTATCATCTGAGGGCCTAGCAGGTTAGAAAAACA  100

seq1  CAGAAGTTAGCTGAGCCCCATGCTAAGGAATGGAAGCAGGTACAGCGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTAGCTGAGCCCCATGCTAAGGAATGGAAGCAGGTACAGCGGTG  150

seq1  GCAGGAGACACAGAGAAAGGCTATCTAGTGCCACCTGAGGATTGCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGACACAGAGAAAGGCTATCTAGTGCCACCTGAGGATTGCTCTGT  200

seq1  GATTCGTTCCTGGCCAGTAACTGTGTGCCTTGGCATCAGGGGTGCAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGTTCCTGGCCAGTAACTGTGTGCCTTGGCATCAGGGGTGCAAAGG  250

seq1  TGAATGGGTGAGCTTTGGCCCTCGGCCGCAGGATATTGGAGTCTGACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGTGAGCTTTGGCCCTCGGCCGCAGGATATTGGAGTCTGACAGT  300

seq1  ATAGACAGATATAAACAATTCAATAGAAATATGTGTTGTAAATAGTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGATATAAACAATTCAATAGAAATATGTGTTGTAAATAGTTGGC  350

seq1  TCATGCAAGAGTGAAAATTAATGACCGATGAGCTGCTTCTTTAATGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAAGAGTGAAAATTAATGACCGATGAGCTGCTTCTTTAATGCTTT  400

seq1  GCCATTTGCAAAGCTCTGAAAGCACACATTACCTTGACCAGGCATGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGCAAAGCTCTGAAAGCACACATTACCTTGACCAGGCATGGTGG  450

seq1  CGTTACCTTTAATCTAGACTCAGGCAGGAGGCAGAGATAAGTAGATATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACCTTTAATCTAGACTCAGGCAGGAGGCAGAGATAAGTAGATATCT  500

seq1  GTGAGTTTGAGCCTGATCTATATAGGGAGTTCAAGGCCAGCTACCTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTGAGCCTGATCTATATAGGGAGTTCAAGGCCAGCTACCTAATG  550

seq1  GGATAAGACAACAAAAAAAAGTAAATAAACAAAAAAATAAAAATAAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGACAACAAAAAAAAGTAAATAAACAAAAAAATAAAAATAAAACC  600

seq1  ACCCAAAACAACAATAGCAAAACCAAACAAACGCATATGCTGCCTCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAACAACAATAGCAAAACCAAACAAACGCATATGCTGCCTCATTT  650

seq1  GATGTTTGTGAAGAGGCAGGGTTTATCATCTGTCCATTGATAAAGAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTGTGAAGAGGCAGGGTTTATCATCTGTCCATTGATAAAGAAACC  700

seq1  AAGGGTTGAGGTACTGTGATTTGTTTCAGGTTGGTATGTGAATCTTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTGAGGTACTGTGATTTGTTTCAGGTTGGTATGTGAATCTTCTTG  750

seq1  GGTTGTTTATAACAAAATGCCCTGGACTGGTGACTGAAGCAATAGCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTATAACAAAATGCCCTGGACTGGTGACTGAAGCAATAGCTCTC  800

seq1  TGTTAACCCTCCCCCAACTCTGGATGCTAGTAGTGTCACATTAAACTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACCCTCCCCCAACTCTGGATGCTAGTAGTGTCACATTAAACTCAT  850

seq1  GCAACTTTGCTTCTGTGAGGGCCTCC-TTCCAGTTTTGTAGATGGCTGCC  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCAACTTTGCTTCTGTGAGGGCCTCCTTTCCAGTTTTGTAGATGGCTGCC  900

seq1  TTCTCCATCTGTCCTAGCAAGGCTAGGGTAGTGGCTGGGAAGGGGAGCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATCTGTCCTAGCAAGGCTAGGGTAGTGGCTGGGAAGGGGAGCTT  950

seq1  GTAGACCACTGCTTGTAACTGTACAAGCCCCATTCTTAAGCTCTTATTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCACTGCTTGTAACTGTACAAGCCCCATTCTTAAGCTCTTATTTA  1000

seq1  ATCTTCTTAACTTTTTCAGATGCCTCATCTACAACTCTAACAC-ACTGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  ATCTTCTTAACTTTTTCAGATGCCTCATCTACAACTCTAACACAACTG-T  1049

seq1  TGGTTTTCAGC-ACGTGAACTGTAGAGGAACATAAACGTTCA-GTGCATA  1096
      ||||||||||| |||||||||||||||||||||||||| ||| |||||||
seq2  TGGTTTTCAGCAACGTGAACTGTAGAGGAACATAAACGGTCAGGTGCATA  1099

seq1  GCAATTAGGC--TGTGACCTGAGGTTCAGTCCTAGTTATCATTTGTCAAC  1144
      || |||||||  |||||| ||||  |||||||||||||||||||||||| 
seq2  GC-ATTAGGCTGTGTGACTTGAG--TCAGTCCTAGTTATCATTTGTCAA-  1145

seq1  CTGACACAGCCT  1156
      ||||||||||||
seq2  CTGACACAGCCT  1157

seq1: chr17_79745311_79746417
seq2: B6Ng01-258G06.g_68_1184 (reverse)

seq1  CCCAGTGACTGTAGAGTTGTTTCTGTAC-TCTCC-ATAGGACAGCAGTTC  48
      ||||||||| |||||||||||||||||| ||||| |||||||||||||||
seq2  CCCAGTGACCGTAGAGTTGTTTCTGTACTTCTCCAATAGGACAGCAGTTC  50

seq1  TCCTCGGA-GGGTAAC-TTTGCAC-TCTCTTAGCAAGT-AACAAAACAAA  94
      |||||||| ||||||| ||||||| ||||||||||||| |||||||  ||
seq2  TCCTCGGAGGGGTAACTTTTGCACTTCTCTTAGCAAGTAAACAAAAACAA  100

seq1  TGTTTAAATCCTGTGACCTCAGGTGG-AAAGGAGTGGCTAGTGGTCCCTC  143
      |||||||||||||||  ||||||||| ||||||||||||||||||||  |
seq2  TGTTTAAATCCTGTGGACTCAGGTGGAAAAGGAGTGGCTAGTGGTCCTCC  150

seq1  AAAGAAAACTATCAGG-CCTTGAGCCTCAATA-GGCTGAAGTTGAGAGAC  191
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  AAAGAAAACTATCAGGCCCTTGAGCCTCAATAGGGCTGAAGTTGAGAGAC  200

seq1  CACAGCAGAATCACGACTGCCAGAATTGATACC-TGAGCAGAGACTGCAT  240
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACAGCAGAATCACGACTGCCAGAATTGATACCTTGAGCAGAGACTGCAT  250

seq1  GTGGCCCCAAAGCATC-AAACCCCTTCCTGAAAAGGTTTGAACCCTTGCT  289
      |||| ||||||||||| ||||||||| |||||||||||||||||||||||
seq2  GTGG-CCCAAAGCATCAAAACCCCTTTCTGAAAAGGTTTGAACCCTTGCT  299

seq1  TTAGATGCTTGCATCTCTACAAAGCTTTGTTGTCCACCCCCATCACGCCC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGCTTGCATCTCTACAAAGCTTTGTTGTCCACCCCCATCACGCCC  349

seq1  TGCACAAGGCTTCAACTACCATTTCTAATGACAACTTCAGCTCACACAGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAGGCTTCAACTACCATTTCTAATGACAACTTCAGCTCACACAGA  399

seq1  CCTACTTAAGTCTAGACTAGAACCCCTCAAAGTGGTCCATGGACCAGACC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTAAGTCTAGACTAGAACCCCTCAAAGTGGTCCATGGACCAGACC  449

seq1  AGTCCATAGGTAAAGAAATTGAAAGTAAGGTCTTAGAAACTTTTTTGACA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATAGGTAAAGAAATTGAAAGTAAGGTCTTAGAAACTTTTTTGACA  499

seq1  TTGCCATAGCAACCAAGCATATGGTTGGTGTTTTCTTTTCTCACTGAAGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATAGCAACCAAGCATATGGTTGGTGTTTTCTTTTCTCACTGAAGT  549

seq1  GGTTGATGATAAATCTGGGGTTTTTGCACTGTTGATCTTGCTGTGTGGGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATGATAAATCTGGGGTTTTTGCACTGTTGATCTTGCTGTGTGGGG  599

seq1  TCCGGGTCATAGATTTCACTGTGCACAGTAAGTTCCATCAATTCTGCCAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGTCATAGATTTCACTGTGCACAGTAAGTTCCATCAATTCTGCCAC  649

seq1  AGATTGAAAATTGAAGTCAAAGGCAAAGCAGTGGCTCTTCTCAGAGAGTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAAAATTGAAGTCAAAGGCAAAGCAGTGGCTCTTCTCAGAGAGTG  699

seq1  TGAAGCACTGTGTTTCTTTCCTGCATTCTGGGGTTCCCGACTTTGCTTTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACTGTGTTTCTTTCCTGCATTCTGGGGTTCCCGACTTTGCTTTC  749

seq1  CTGGGAAACTCCATCTTTCCTCCCTCTGACTAGCCATGGTGAGGGCCTTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAACTCCATCTTTCCTCCCTCTGACTAGCCATGGTGAGGGCCTTC  799

seq1  TGTGCTTTCTTCTCTTTCTTTGTAAATGGCCAAACCCAGCTATCATTTTA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTCTTCTCTTTCTTTGTAAATGGCCAAACCCAGCTATCATTTTA  849

seq1  ACCTCTCCCTGGCTTCATTCTCCTGTCAAGTCTAAAACCCTATCACTGAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCCTGGCTTCATTCTCCTGTCAAGTCTAAAACCCTATCACTGAA  899

seq1  TCTCTCCTCATTCGCCCCCACAATTGCCGTGTTGTGCGTGCATTTGCCTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTCATTCGCCCCCACAATTGCCGTGTTGTGCGTGCATTTGCCTC  949

seq1  TCCTCTTTCTCTTCTTACCTAGAATCCACCCATAATCTTAAAACCCTTAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTCTCTTCTTACCTAGAATCCACCCATAATCTTAAAACCCTTAA  999

seq1  GAGGCAGGCCCACCCTTACAGCCTGGGGATAGGACTGCACAGGACCACAC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCCCACCCTTACAGCCTGGGGATAGGACTGCACAGGACCACAC  1049

seq1  AGGCAAACCGAGGGGCTGCCCAGCCCTACAGCTGTAGCTCTTCCCTGTTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAACCGAGGGGCTGCCCAGCCCTACAGCTGTAGCTCTTCCCTGTTG  1099

seq1  CCAAGGCCTCTGGAATTC  1107
      ||||||||||||||||||
seq2  CCAAGGCCTCTGGAATTC  1117