BAC Information

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BAC

Clone NameB6Ng01-258J10
Chromosome17 (Build37)
Map Location 33,718,177 - 33,925,242
singlet/doubletdoublet
Overlap geneMyo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4
Upstream geneLOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10
Downstream geneAnkrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258J10.bB6Ng01-258J10.g
ACCGA063990GA063991
length1,0651,175
definitionB6Ng01-258J10.b B6Ng01-258J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,924,183 - 33,925,242)(33,718,177 - 33,719,319)
sequence
gaattcacttcccagcatccacatgagagcctgtaattccaactccaggg
gatccattgctctctcctgtcctccaatggcactatgtgcaagtgcacag
acatgcaaggataaacactcctacatataaagtaaatcagtaaaaattta
aaaatgagtgaaatattcccaataaatccatcaaaaagtaaaagtaaaat
ttaatggcctttaagttggaccattataaacggaaaactatttgtatata
atgaagcagcagtaaatacattcactaggtgtgcaacttttttaaaaact
ccaaagagaaaccctaaaacatcacttcttgtttgtctcttaagagttca
ttgtaagaacagaagagatagccattggtaaagaggattggatgttctca
cagaggacaggcttggttcccagcacttacgtggcctgtcgtaattgtgt
gtaactctagtctcagaggatatagccttctcttctagcctcagtagaca
ctggacaagcagatggtgcacgtacatttatataagcaaacacccataca
tataaaaataattccttagaaaaaaatttcatgtgtgaaaataggtgagg
gatttgagacaggacctggttagactacattctctatgtacctagggatc
acctttacctcctggtccttctgcctccacctctcaagttttgggattcc
aggaatgcatcaccacagccaattgtttttgttttcttttgtatgaaatg
gtagggattgagcccaccattttgtgtatgcttggcaagcattctaccaa
ttgagatagacttccagcccaccatataacctcatgtcatttcgtttctg
attgctgtgggaagaaataccctaacaaaagcagttttaaaggagaaagg
gcttattcaggttcatcgaagcaagggatatcaacatagggatttgaagt
agccagtcacatccaccagtcaacagctcacaattttattgatcaagagg
agagaagaatgaacaccatacatggtgtaatattcacatcagttcacttt
ctcacactttatatt
gaattcacatatacatgtgtactcatacacatgcatacttacacaaacat
atcaatgcatatatcacacacacacacacacacacacacacacacacaag
gcaaatcaggcagttaagatgtgttagtcagtaaaatacttgccatgcaa
gttcaatcctcagcacttattttaaaaattaaaaatccagagaaggagcc
gggcgtggtggcgcacgcctttaatcccagcacttgggaggcagaggcag
gtgaatttctgagttcgaggccagcctggtctacaaagtgagttccagga
cagccagggctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaa
aaaaaaaaaaaaagaaaaaaagaaaaaaagaaaaagaaaagaaaagaaaa
aatccagagaagatagtccctgcttgtaacaccagtactggcaaagacaa
gattactagggttcaccagccaggtaacctagtctacttatcaagttcca
atccaatgagaaaatcaaggtaggtggtacctgaggaatgacacccaagg
ttgacctctgcctgccatacacatatatgaacacagatgcctagcacaca
caaagtaagatcaggctaccaaacatcttgtctccctgagttcatgccac
gggcccaggaatctaatcctggatccttggtggagaacaaagttggtagc
ataagctgtccctgtctttcccacagagcgccatgcaagtcatcgggatt
ccgacaaagcgtgcagcagcttgtcttgcagctcgtggcagggaatcttg
caaccttggggaaacatcagcttctgtgaagaaggggaatttattgcccg
cgtggaagagcgtaaaccgtgagtgtgggtgatgtcgggcatcaggctct
agtaataaggactgctttctttccccacttcaaatcccaagaagaaacca
tgttggtgttcactgggggaagcttcctatgttccagagaatcctgacca
ggctgcttccttttggctctggcctggcagtcttagctttcccagcctta
ccctgctgggcaatagacaggtggggcggctgcaagaaaagcttgaccta
tgccgtaagaatggacacgcaattgggggtgaacgcagtggagtccattg
gagtgaccctcagttgaacaggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33924183_33925242
seq2: B6Ng01-258J10.b_48_1112 (reverse)

seq1  AATA-AAAGTGTGGAGAAAGTGAACTGATGTGAATA-TACA-CATGTAT-  46
      |||| ||||||| ||||||||||||||||||||||| |||| ||||||| 
seq2  AATATAAAGTGT-GAGAAAGTGAACTGATGTGAATATTACACCATGTATG  49

seq1  GTGTTCATTCTTTCTCTCCTCTTGATC-ATAAAATTGTGAGCTGTTGACT  95
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  GTGTTCATTC-TTCTCTCCTCTTGATCAATAAAATTGTGAGCTGTTGACT  98

seq1  -GTGGATGTGACTGGCTACTTCAAATCCCTATGTTGAT-TTCCTTGCTTC  143
       ||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  GGTGGATGTGACTGGCTACTTCAAATCCCTATGTTGATATCCCTTGCTTC  148

seq1  GATGAACCTGAATAAGCCCTTTCTCCTTTAAAACTGCTTTTGTTAGGGTA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACCTGAATAAGCCCTTTCTCCTTTAAAACTGCTTTTGTTAGGGTA  198

seq1  TTTCTTCCCACAGCAATCAGAAACGAAATGACATGAGGTTATATGGTGGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCACAGCAATCAGAAACGAAATGACATGAGGTTATATGGTGGG  248

seq1  CTGGAAGTCTATCTCAATTGGTAGAATGCTTGCCAAGCATACACAAAATG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTCTATCTCAATTGGTAGAATGCTTGCCAAGCATACACAAAATG  298

seq1  GTGGGCTCAATCCCTACCATTTCATACAAAAGAAAACAAAAACAATTGGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTCAATCCCTACCATTTCATACAAAAGAAAACAAAAACAATTGGC  348

seq1  TGTGGTGATGCATTCCTGGAATCCCAAAACTTGAGAGGTGGAGGCAGAAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGATGCATTCCTGGAATCCCAAAACTTGAGAGGTGGAGGCAGAAG  398

seq1  GACCAGGAGGTAAAGGTGATCCCTAGGTACATAGAGAATGTAGTCTAACC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGAGGTAAAGGTGATCCCTAGGTACATAGAGAATGTAGTCTAACC  448

seq1  AGGTCCTGTCTCAAATCCCTCACCTATTTTCACACATGAAATTTTTTTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGTCTCAAATCCCTCACCTATTTTCACACATGAAATTTTTTTCT  498

seq1  AAGGAATTATTTTTATATGTATGGGTGTTTGCTTATATAAATGTACGTGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTATTTTTATATGTATGGGTGTTTGCTTATATAAATGTACGTGC  548

seq1  ACCATCTGCTTGTCCAGTGTCTACTGAGGCTAGAAGAGAAGGCTATATCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGCTTGTCCAGTGTCTACTGAGGCTAGAAGAGAAGGCTATATCC  598

seq1  TCTGAGACTAGAGTTACACACAATTACGACAGGCCACGTAAGTGCTGGGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACTAGAGTTACACACAATTACGACAGGCCACGTAAGTGCTGGGA  648

seq1  ACCAAGCCTGTCCTCTGTGAGAACATCCAATCCTCTTTACCAATGGCTAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCTGTCCTCTGTGAGAACATCCAATCCTCTTTACCAATGGCTAT  698

seq1  CTCTTCTGTTCTTACAATGAACTCTTAAGAGACAAACAAGAAGTGATGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTTCTTACAATGAACTCTTAAGAGACAAACAAGAAGTGATGTT  748

seq1  TTAGGGTTTCTCTTTGGAGTTTTTAAAAAAGTTGCACACCTAGTGAATGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTTTCTCTTTGGAGTTTTTAAAAAAGTTGCACACCTAGTGAATGT  798

seq1  ATTTACTGCTGCTTCATTATATACAAATAGTTTTCCGTTTATAATGGTCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGCTGCTTCATTATATACAAATAGTTTTCCGTTTATAATGGTCC  848

seq1  AACTTAAAGGCCATTAAATTTTACTTTTACTTTTTGATGGATTTATTGGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAGGCCATTAAATTTTACTTTTACTTTTTGATGGATTTATTGGG  898

seq1  AATATTTCACTCATTTTTAAATTTTTACTGATTTACTTTATATGTAGGAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCACTCATTTTTAAATTTTTACTGATTTACTTTATATGTAGGAG  948

seq1  TGTTTATCCTTGCATGTCTGTGCACTTGCACATAGTGCCATTGGAGGACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCCTTGCATGTCTGTGCACTTGCACATAGTGCCATTGGAGGACA  998

seq1  GGAGAGAGCAATGGATCCCCTGGAGTTGGAATTACAGGCTCTCATGTGGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGCAATGGATCCCCTGGAGTTGGAATTACAGGCTCTCATGTGGA  1048

seq1  TGCTGGGAAGTGAATTC  1060
      |||||||||||||||||
seq2  TGCTGGGAAGTGAATTC  1065

seq1: chr17_33718177_33719319
seq2: B6Ng01-258J10.g_68_1242

seq1  GAATTCACATATACATGTGTACTCATACACATGCATACTTACACAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATATACATGTGTACTCATACACATGCATACTTACACAAACAT  50

seq1  ATCAATGCATATATCACACACACACACACACACACACACACACACACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGCATATATCACACACACACACACACACACACACACACACACAAG  100

seq1  GCAAATCAGGCAGTTAAGATGTGTTAGTCAGTAAAATACTTGCCATGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCAGGCAGTTAAGATGTGTTAGTCAGTAAAATACTTGCCATGCAA  150

seq1  GTTCAATCCTCAGCACTTATTTTAAAAATTAAAAATCCAGAGAAGGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATCCTCAGCACTTATTTTAAAAATTAAAAATCCAGAGAAGGAGCC  200

seq1  GGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAG  250

seq1  GTGAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGA  300

seq1  CAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAA  350

seq1  AAAAAAAAAAAAAGAAAAAAAGAAAAAAAGAAAAAGAAAAGAAAAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGAAAAAAAGAAAAAAAGAAAAAGAAAAGAAAAGAAAA  400

seq1  AATCCAGAGAAGATAGTCCCTGCTTGTAACACCAGTACTGGCAAAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGAGAAGATAGTCCCTGCTTGTAACACCAGTACTGGCAAAGACAA  450

seq1  GATTACTAGGGTTCACCAGCCAGGTAACCTAGTCTACTTATCAAGTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTAGGGTTCACCAGCCAGGTAACCTAGTCTACTTATCAAGTTCCA  500

seq1  ATCCAATGAGAAAATCAAGGTAGGTGGTACCTGAGGAATGACACCCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGAGAAAATCAAGGTAGGTGGTACCTGAGGAATGACACCCAAGG  550

seq1  TTGACCTCTGCCTGCCATACACATATATGAACACAGATGCCTAGCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCTGCCTGCCATACACATATATGAACACAGATGCCTAGCACACA  600

seq1  CAAAGTAAGATCAGGCTACCAAACATCTTGTCTCCCTGAGTTCATGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAAGATCAGGCTACCAAACATCTTGTCTCCCTGAGTTCATGCCAC  650

seq1  GGGCCCAGGAATCTAATCCTGGATCCTTGGTGGAGAACAAAGTTGGTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCAGGAATCTAATCCTGGATCCTTGGTGGAGAACAAAGTTGGTAGC  700

seq1  ATAAGCTGTCCCTGTCTTTCCCACAGAGCGCCATGCAAGTCATCGGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTGTCCCTGTCTTTCCCACAGAGCGCCATGCAAGTCATCGGGATT  750

seq1  CCGAC-AAGCGTGCAGCAGCTTGTCTTGCAGCTCGTGGCAGGG-ATCTTG  798
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCGACAAAGCGTGCAGCAGCTTGTCTTGCAGCTCGTGGCAGGGAATCTTG  800

seq1  C-ACCT--GGGGAACATCAGCTTCTGTGAAGAA-GGGAATT--ATGCCCG  842
      | ||||  ||| ||||||||||||||||||||| |||||||   ||||||
seq2  CAACCTTGGGGAAACATCAGCTTCTGTGAAGAAGGGGAATTTATTGCCCG  850

seq1  CGTGG-AGAGCGTAGACCGTGAGTGTGGGTGATGTCGGGCATCAGGCTCT  891
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  CGTGGAAGAGCGTAAACCGTGAGTGTGGGTGATGTCGGGCATCAGGCTCT  900

seq1  AGT-ATAAGGACTGC-TTCTT--CCCACTTCAAATCCCAAGA--GAACCA  935
      ||| ||||||||||| |||||  |||||||||||||||||||   |||||
seq2  AGTAATAAGGACTGCTTTCTTTCCCCACTTCAAATCCCAAGAAGAAACCA  950

seq1  TGTTGGTG-TCACT-GGGGAAGC-TCCTATG-TCCAGAG-ATCCTGACCA  980
      |||||||| ||||| |||||||| ||||||| ||||||| ||||||||||
seq2  TGTTGGTGTTCACTGGGGGAAGCTTCCTATGTTCCAGAGAATCCTGACCA  1000

seq1  -GCTGCTTCCTTTT-GCTCTGGCCTGGCAGTCTTAGCTTTCCCAGCCT--  1026
       ||||||||||||| |||||||||||||||||||||||||||||||||  
seq2  GGCTGCTTCCTTTTGGCTCTGGCCTGGCAGTCTTAGCTTTCCCAGCCTTA  1050

seq1  ACCTGCTGGGC-ATAGACAG--TGGGCGGCTGCAAGAGAAGC-TGACC--  1070
       |||||||||| ||||||||   |||||||||||||| |||| |||||  
seq2  CCCTGCTGGGCAATAGACAGGTGGGGCGGCTGCAAGAAAAGCTTGACCTA  1100

seq1  AGCCGTAAG-ATGGACA-GCAAAT-GGGGTGGACGCAGT-GAGTCCATTG  1116
       |||||||| ||||||| |||| | |||||| ||||||| ||||||||||
seq2  TGCCGTAAGAATGGACACGCAATTGGGGGTGAACGCAGTGGAGTCCATTG  1150

seq1  ATGTGACCCTCAATGTGGAACAGGCAG  1143
        ||||||||||  || ||||||||||
seq2  GAGTGACCCTCA--GTTGAACAGGCAG  1175