BAC Information

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BAC

Clone NameB6Ng01-258P11
Chromosome17 (Build37)
Map Location 83,860,654 - 84,024,378
singlet/doubletdoublet
Overlap geneEml4, Cox7a2l, Kcng3
Upstream geneEG625514, LOC100043711, LOC100043900, AW548124, EG545226
Downstream geneMta3, Haao, Zfp36l2, Thada, Plekhh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258P11.bB6Ng01-258P11.g
ACCGA064270GA064271
length1,0921,075
definitionB6Ng01-258P11.b B6Ng01-258P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,023,285 - 84,024,378)(83,860,654 - 83,861,737)
sequence
gaattcacttagagagtgtgcagactgtttcatcaagatggtttccatcg
tacagtgtggaaaatggactctaattctcctctcaccaaccagtgcctgg
ggttctctctgctacatacttctcataaaaccctagcatgggaggcagat
ctcatagaagagaattgtattcactgctcaataggagtggttatgccaga
gggaccctgatacctgtgggcctgagaacagcttcactaatcggaagtag
tagctgtaatatcgtgtgtgtgtgcgcgcgtgcgtgtgcgcgcgcacgcg
catgtgctcacgtgtataagtttgtagcccaaacccttaagtagatttta
aaatttcttggctttattttttttgtgttgttacactatgtcttattagc
tacctgttctctctctctctctctctctctctctctctctcacacacaca
cacacacacacacacacacacacacattcgtgtatacaaatgaatgaccg
aatggttgttttgtactgtggagattgaacccatgtagaagcaagtgacg
atccatactatttaatcatacggtttggctaggcatttacagacgtataa
agtgtgccagaattgtctgtgcgccttaaccacacaccagctcactggtt
ggatttttaaatagcaaaagaaaaagaactaggtctgatagtatataaac
ttgtaagtttcaggcaagccctcaaatgaaaaacccccaaacaattttga
aaaaatgaaccaaagcaaaaccgatgtacttgtgactgaacgttgtatgg
cattcagctttcggtatctgtgttagctctttgacacagtgtctgacaga
attgagcagctgtaatgtggcctttggcagagcatggtggtgcatgccta
agtgccagcgctgggagacagaggcaagaggatcagtgtttcaagtcttg
aggccaaccctgggctacatgagactgtcttaaaagcacccccaaggcta
ggcgtggtggtgcaccccctttataccagcatttgggaggcaaagcatgt
agatttcttaattcaggaactgctggtctacagagtgagttc

gaattcctaagaagaaatgaaaagtaggcccatgtctgtctagcagcatt
ttttgataaataaactcagcattaattagaagatgcactatcatagttat
aaggttaatattgatgtttttaaaattaaaattgtaggaaaagtcaccta
ctgtttcctgtagatgtaaatgtctgaaggtgggttgtttaggttttctc
ttctttcctaaacaggtggtttgttctggatgcagaaacaagagatctgg
tgtcaatccacacggatggcaatgagcagctgtctgtgatgcgctactca
gtaggtgagcaggcttccccgtgtcacatgcactgccccatctgaaatca
cgtgtgtgcttgatgaagtcctctgtgttcgagagtttcaagtgtggact
gtcccctgagcgtcaggttcagttccacggctgcagctacgaaatctgca
agactggagctgcatggagccagtgtaaatttagaatgaaacgtggcagt
tgcagataaaaacagtaaagagcaatcaaatcacagtgcacacagaagga
gccatatatattaaacagagtgttccatctaattagcaagcttctcttta
tacttaagtctagaagcagtagagaaagagttccgtggtagaacacttgc
ctaccacattctccttttgacatcccccaaacattgtaaagaaacagcca
gaatacacactaggatccaactatcacttctttatactctagttagcctt
gttttgagttacataatcataattgttagttattaaataaaatacttagt
aattcattgtaagaattttatataacttcattcagcattgagtaattatt
tgtatactttatccaaaatgttaactttctatagtattccagttacttct
gtttttgttatgtatatggtttaatttatatcttttttttttttttttct
aaattagtttggccttttttgaggcatagtctttcccaaactggcctgaa
atttatatctcctctcacttctggagactggattataagcatgcagacac
actgccttgttaacactgacgcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_84023285_84024378
seq2: B6Ng01-258P11.b_45_1136 (reverse)

seq1  GAACTCACTCTGTAGACCAGGCTGTCCTCGAACTCAGAAATCTACCTGCC  50
      ||||||||||||||||||| || || |  ||| | |||||||||| || |
seq2  GAACTCACTCTGTAGACCA-GCAGTTCCTGAATTAAGAAATCTACATG-C  48

seq1  TCTGCCTCCCAAATGCTGGTATTAAAGGCGTGCACCACCACGCCTAGCCT  100
      | |||||||||||||||||||| || || |||||||||||||||||||||
seq2  TTTGCCTCCCAAATGCTGGTATAAAGGGGGTGCACCACCACGCCTAGCCT  98

seq1  GGGGGTTGCTTTTTAAGACAGTCTCATGTAGCCCA-GGTTGGCCTC-AGA  148
       |||| ||| ||||||||||||||||||||||||| |||||||||| |||
seq2  TGGGGGTGC-TTTTAAGACAGTCTCATGTAGCCCAGGGTTGGCCTCAAGA  147

seq1  CTTGAACACCTGATCCTCTTGCCTCTGTCTCCCCAGCGCTGGCACTTAGG  198
      ||||||   ||||||||||||||||||||| |||||||||||||||||||
seq2  CTTGAAACACTGATCCTCTTGCCTCTGTCT-CCCAGCGCTGGCACTTAGG  196

seq1  CATGCACCACCATGCTCTGCCAAAGGCCACATTACAGCTGCTCAATTCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACCACCATGCTCTGCCAAAGGCCACATTACAGCTGCTCAATTCTG  246

seq1  TCAGACACTGTGTCAAAGAGCTAACACAGATACCGAAAGCTGAATGCCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACTGTGTCAAAGAGCTAACACAGATACCGAAAGCTGAATGCCAT  296

seq1  ACAACGTTCAGTCACAAGTACATCGGTTTTGCTTTGGTTCATTTTTTCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTTCAGTCACAAGTACATCGGTTTTGCTTTGGTTCATTTTTTCAA  346

seq1  AATTGTTTGGGGGTTTTTCATTTGAGGGCTTGCCTGAAACTTACAAGTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTGGGGGTTTTTCATTTGAGGGCTTGCCTGAAACTTACAAGTTT  396

seq1  ATATACTATCAGACCTAGTTCTTTTTCTTTTGCTATTTAAAAATCCAACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTATCAGACCTAGTTCTTTTTCTTTTGCTATTTAAAAATCCAACC  446

seq1  AGTGAGCTGGTGTGTGGTTAAGGCGCACAGACAATTCTGGCACACTTTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTGGTGTGTGGTTAAGGCGCACAGACAATTCTGGCACACTTTAT  496

seq1  ACGTCTGTAAATGCCTAGCCAAACCGTATGATTAAATAGTATGGATCGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGTAAATGCCTAGCCAAACCGTATGATTAAATAGTATGGATCGTC  546

seq1  ACTTGCTTCTACATGGGTTCAATCTCCACAGTACAAAACAACCATTCGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTCTACATGGGTTCAATCTCCACAGTACAAAACAACCATTCGGT  596

seq1  CATTCATTTGTATACACGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTTGTATACACGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  646

seq1  TGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAGGTAGCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAGGTAGCTA  696

seq1  ATAAGACATAGTGTAACAACACAAAAAAAATAAAGCCAAGAAATTTTAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACATAGTGTAACAACACAAAAAAAATAAAGCCAAGAAATTTTAAA  746

seq1  ATCTACTTAAGGGTTTGGGCTACAAACTTATACACGTGAGCACATGCGCG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTAAGGGTTTGGGCTACAAACTTATACACGTGAGCACATGCGCG  796

seq1  TGCGCGCGCACACGCACGCGCGCACACACACACGATATTACAGCTACTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCGCGCACACGCACGCGCGCACACACACACGATATTACAGCTACTAC  846

seq1  TTCCGATTAGTGAAGCTGTTCTCAGGCCCACAGGTATCAGGGTCCCTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGATTAGTGAAGCTGTTCTCAGGCCCACAGGTATCAGGGTCCCTCTG  896

seq1  GCATAACCACTCCTATTGAGCAGTGAATACAATTCTCTTCTATGAGATCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACCACTCCTATTGAGCAGTGAATACAATTCTCTTCTATGAGATCT  946

seq1  GCCTCCCATGCTAGGGTTTTATGAGAAGTATGTAGCAGAGAGAACCCCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCATGCTAGGGTTTTATGAGAAGTATGTAGCAGAGAGAACCCCAG  996

seq1  GCACTGGTTGGTGAGAGGAGAATTAGAGTCCATTTTCCACACTGTACGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGTTGGTGAGAGGAGAATTAGAGTCCATTTTCCACACTGTACGAT  1046

seq1  GGAAACCATCTTGATGAAACAGTCTGCACACTCTCTAAGTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCATCTTGATGAAACAGTCTGCACACTCTCTAAGTGAATTC  1092


seq1: chr17_83860654_83861737
seq2: B6Ng01-258P11.g_67_1141

seq1  GAATTCCTAAGAAGAAATGAAAAGTAGGCCCATGTCTGTCTAGCAGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGAAGAAATGAAAAGTAGGCCCATGTCTGTCTAGCAGCATT  50

seq1  TTTTGATAAATAAACTCAGCATTAATTAGAAGATGCACTATCATAGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATAAATAAACTCAGCATTAATTAGAAGATGCACTATCATAGTTAT  100

seq1  AAGGTTAATATTGATGTTTTTAAAATTAAAATTGTAGGAAAAGTCACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAATATTGATGTTTTTAAAATTAAAATTGTAGGAAAAGTCACCTA  150

seq1  CTGTTTCCTGTAGATGTAAATGTCTGAAGGTGGGTTGTTTAGGTTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTGTAGATGTAAATGTCTGAAGGTGGGTTGTTTAGGTTTTCTC  200

seq1  TTCTTTCCTAAACAGGTGGTTTGTTCTGGATGCAGAAACAAGAGATCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTAAACAGGTGGTTTGTTCTGGATGCAGAAACAAGAGATCTGG  250

seq1  TGTCAATCCACACGGATGGCAATGAGCAGCTGTCTGTGATGCGCTACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATCCACACGGATGGCAATGAGCAGCTGTCTGTGATGCGCTACTCA  300

seq1  GTAGGTGAGCAGGCTTCCCCGTGTCACATGCACTGCCCCATCTGAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGAGCAGGCTTCCCCGTGTCACATGCACTGCCCCATCTGAAATCA  350

seq1  CGTGTGTGCTTGATGAAGTCCTCTGTGTTCGAGAGTTTCAAGTGTGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGCTTGATGAAGTCCTCTGTGTTCGAGAGTTTCAAGTGTGGACT  400

seq1  GTCCCCTGAGCGTCAGGTTCAGTTCCACGGCTGCAGCTACGAAATCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGAGCGTCAGGTTCAGTTCCACGGCTGCAGCTACGAAATCTGCA  450

seq1  AGACTGGAGCTGCATGGAGCCAGTGTAAATTTAGAATGAAACGTGGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGAGCTGCATGGAGCCAGTGTAAATTTAGAATGAAACGTGGCAGT  500

seq1  TGCAGATAAAAACAGTAAAGAGCAATCAAATCACAGTGCACACAGAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATAAAAACAGTAAAGAGCAATCAAATCACAGTGCACACAGAAGGA  550

seq1  GCCATATATATTAAACAGAGTGTTCCATCTAATTAGCAAGCTTCTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATATATTAAACAGAGTGTTCCATCTAATTAGCAAGCTTCTCTTTA  600

seq1  TACTTAAGTCTAGAAGCAGTAGAGAAAGAGTTCCGTGGTAGAACACTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAGTCTAGAAGCAGTAGAGAAAGAGTTCCGTGGTAGAACACTTGC  650

seq1  CTACCACATTCTCCTTTTGACATCCCCCAAACATTGTAAAGAAACAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACATTCTCCTTTTGACATCCCCCAAACATTGTAAAGAAACAGCCA  700

seq1  GAATACACACTAGGATCCAACTATCACTTCTTTATACTCTAGTTAGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACACACTAGGATCCAACTATCACTTCTTTATACTCTAGTTAGCCTT  750

seq1  GTTTTGAGTTACATAATCATAATTGTTAGTTATTAAATAAAATACTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGTTACATAATCATAATTGTTAGTTATTAAATAAAATACTTAGT  800

seq1  AATTCATTGTAAGAATTTTATATAACTTCATTCAGCATTGAGTAATTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTGTAAGAATTTTATATAACTTCATTCAGCATTGAGTAATTATT  850

seq1  TGTATACTTTATCCAAAATGTTAACTTTCTATAGTATTCCAGTTACTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACTTTATCCAAAATGTTAACTTTCTATAGTATTCCAGTTACTTCT  900

seq1  GTTTTTGTTATGTATATGGTTTAATTTATATCTTTTTTTTTTTTTTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTATGTATATGGTTTAATTTATATCTTTTTTTTTTTTTTTTCT  950

seq1  AAAATTAGTTTGG-CTTTTTTGAGGCATAGTCTTTCCCAAACTGGCCTGA  999
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -AAATTAGTTTGGCCTTTTTTGAGGCATAGTCTTTCCCAAACTGGCCTGA  999

seq1  AATTTATAATTCTCCTTCCTCACTCCTGGAAGAACTGGGATTATAAGCAT  1049
      ||||||||  ||||||  |||||| |||||   ||| |||||||||||||
seq2  AATTTATA--TCTCCT--CTCACTTCTGGA--GACT-GGATTATAAGCAT  1042

seq1  GCAGGACACACCTGCCTTGGTTACACTGGCGCATT  1084
      ||| |||||| |||||||| | |||||| ||||||
seq2  GCA-GACACA-CTGCCTTGTTAACACTGACGCATT  1075


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