BAC Information

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BAC

Clone NameB6Ng01-259J10
Chromosome17 (Build37)
Map Location 88,710,704 - 88,800,130
singlet/doubletdoublet
Overlap genenone
Upstream geneTtc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259J10.bB6Ng01-259J10.g
ACCGA064731GA064732
length1,176801
definitionB6Ng01-259J10.b B6Ng01-259J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,798,947 - 88,800,130)(88,710,704 - 88,711,497)
sequence
gaattcagtgagtgtcacatcctgaagcagcccaaacttgtcatcatttg
gaaaaagccaaagggaagaaacagatgatatgaatttggccacactttca
ttctatttaagggaggccatcctgttattttacaagggttcttacacttc
cacactgagttattatcactcggtgtgattctttctgccttgttaaattg
actaacaaggtaattttttgggctgaggtggtttgaagaggatacaagaa
tctgcacagaaaatagcagtaattttctaagctcagccaagtcaattgta
tccatcttgtgctaacagaaagactctgtcttttagtagacaacccacta
tgtgattgtcctggctgaatggctgcagagatgttgttttgaggagagcg
cagaaatcctgcaggtttaattgccaataaatcagcatgccctccaatcc
ctggcaggcctgttctacaatcatcttttcaaccagaaaatgaagagctg
ggttttacaaagtgtaagtcctgcctgtgctaggaaaacagaagcacact
ggttgccctctctgtcacagactccgcaagataacgaaggactctattca
tggcacgttctgtttgcgtttagattattttcaacttgtcttatagttat
ttctttttgttattacacggacacccccctcacacacactccgtctttag
aaaagtcttatcattcattagtttaatattttgccagagagattatcccc
tacttagttgcacaaatttgcattaaaatatcctggttctctgaaaacac
tagtcacaaactggctggcttggatgttgctttgagctggttttcaaatt
tgtttttaaaagtgcttattttaaaattaatatctccaattttgactaca
atgggataaagaaatttgaccgttgatcatccccaataaaacgtaatgag
cctgggattgtactttaagctccttgtgtatctattttaatttaaataag
taatgtctgggggtagatagccatacatctgaatatttattgtatttaca
cttataagaaacataaaattttaaactagccgggcagtggtgctcatatc
ttgatctcagcacttgtgagaacgagtaggtagatttttgaggccagcct
ggctacgagtggagtccaggacgcca
gaattcttttcctgggttctatgtctgggggagcaacatcttatttagat
ccgaggatgatatcttgttgagtgttggctttatcctaaagcatggttgg
aaactacagttcatgggatcattctgcttgcttcagggacagtccaggga
catgggagggaggagagaggtccagatgctatgtgggactctacagacac
tgggttttttttttcctcaaattttgtcggacatgacaattaattgtact
gtatactgggttgggtttttggtacaggtgatggggaggatagccataaa
gaatatctaaaagctagacatggtggtacctcaaccccctgacctgcatc
agactacatatattcatttccctgcatcgggctacataaatccctatcac
tgaacaatggtacaattttcccaacccaggctaacaatcaaattgggaca
gttaccgttcaagtgtctccccagtgtacctggttatgaaggacagaggg
ttaatctgacctgaactagtttgaattcacatccaataaggcaaaactgt
gtcctgtagtaatctcttagggagaatcttctattcaccattctaggctt
aggcatcactgggtgtgcatatgactaaagatcaaatgcactatgggaga
ggcaggtgcaatagagaaatgattatataacctgacctagcaaacgaaac
ggacgacccacccagggtttagtgacagtaaacaagcttctccttcccct
taattcccccgaaagatgccccggggcccctgtgttgtgtgtgttttgtg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_88798947_88800130
seq2: B6Ng01-259J10.b_45_1220 (reverse)

seq1  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAAAATCTAC  50
      |||| ||||||||   ||||| |||| |||||||||||||||||||||||
seq2  TGGC-GTCCTGGACTCCACTC-GTAG-CCAGGCTGGCCTCAAAAATCTAC  47

seq1  TACCTCTGTCTCACAAGTGCTGAGATTAAAGATATGAGCCACCACTGCCC  100
         |||  ||||||||||||||||| | |||||||||| |||||||||||
seq2  CTACTCGTTCTCACAAGTGCTGAGA-TCAAGATATGAG-CACCACTGCCC  95

seq1  GGCTAGTTTTAAATTTTTAATGTTTTCTTATAGTTGT-AATACAATTAAA  149
      ||||||||| |||||||  ||| |||||||||  ||| ||||||| ||||
seq2  GGCTAGTTTAAAATTTT--ATG-TTTCTTATAAGTGTAAATACAA-TAAA  141

seq1  TATTCAGATGTATGGCTATCTA-CCCCAGACATTACTTATTTAAATTAAA  198
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATTCAGATGTATGGCTATCTACCCCCAGACATTACTTATTTAAATTAAA  191

seq1  ATAGATACACAAGGAGCTTAAAGTACAATCCCAGGCTCATTACGTTTTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAGATACACAAGGAGCTTAAAGTACAATCCCAGGCTCATTACGTTTTA-  240

seq1  TTGGGGATGATCAAACGGTCAAATTTCTTTAT-CCATTGTAGTCAAAATT  297
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TTGGGGATGATC-AACGGTCAAATTTCTTTATCCCATTGTAGTCAAAATT  289

seq1  GGAGATATTAATTTTAAAATAAGCACTTTTAAAAACAAATTTGAAAACCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATATTAATTTTAAAATAAGCACTTTTAAAAACAAATTTGAAAACCA  339

seq1  GCTCAAAGCAACATCCAAGCCAGCCAGTTTGTGACTAGTGTTTTCAGAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGCAACATCCAAGCCAGCCAGTTTGTGACTAGTGTTTTCAGAGA  389

seq1  ACCAGGATATTTTAATGCAAATTTGTGCAACTAAGTAGGGGATAATCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGATATTTTAATGCAAATTTGTGCAACTAAGTAGGGGATAATCTCT  439

seq1  CTGGCAAAATATTAAACTAATGAATGATAAGACTTTTCTAAAGACGGAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAAATATTAAACTAATGAATGATAAGACTTTTCTAAAGACGGAGT  489

seq1  GTGTGTGAGGGGGGTGTCCGTGTAATAACAAAAAGAAATAACTATAAGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAGGGGGGTGTCCGTGTAATAACAAAAAGAAATAACTATAAGAC  539

seq1  AAGTTGAAAATAATCTAAACGCAAACAGAACGTGCCATGAATAGAGTCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAAAATAATCTAAACGCAAACAGAACGTGCCATGAATAGAGTCCT  589

seq1  TCGTTATCTTGCGGAGTCTGTGACAGAGAGGGCAACCAGTGTGCTTCTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTATCTTGCGGAGTCTGTGACAGAGAGGGCAACCAGTGTGCTTCTGT  639

seq1  TTTCCTAGCACAGGCAGGACTTACACTTTGTAAAACCCAGCTCTTCATTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGCACAGGCAGGACTTACACTTTGTAAAACCCAGCTCTTCATTT  689

seq1  TCTGGTTGAAAAGATGATTGTAGAACAGGCCTGCCAGGGATTGGAGGGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTGAAAAGATGATTGTAGAACAGGCCTGCCAGGGATTGGAGGGCA  739

seq1  TGCTGATTTATTGGCAATTAAACCTGCAGGATTTCTGCGCTCTCCTCAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATTTATTGGCAATTAAACCTGCAGGATTTCTGCGCTCTCCTCAAA  789

seq1  ACAACATCTCTGCAGCCATTCAGCCAGGACAATCACATAGTGGGTTGTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATCTCTGCAGCCATTCAGCCAGGACAATCACATAGTGGGTTGTCT  839

seq1  ACTAAAAGACAGAGTCTTTCTGTTAGCACAAGATGGATACAATTGACTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGACAGAGTCTTTCTGTTAGCACAAGATGGATACAATTGACTTG  889

seq1  GCTGAGCTTAGAAAATTACTGCTATTTTCTGTGCAGATTCTTGTATCCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTTAGAAAATTACTGCTATTTTCTGTGCAGATTCTTGTATCCTC  939

seq1  TTCAAACCACCTCAGCCCAAAAAATTACCTTGTTAGTCAATTTAACAAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCACCTCAGCCCAAAAAATTACCTTGTTAGTCAATTTAACAAGG  989

seq1  CAGAAAGAATCACACCGAGTGATAATAACTCAGTGTGGAAGTGTAAGAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAATCACACCGAGTGATAATAACTCAGTGTGGAAGTGTAAGAAC  1039

seq1  CCTTGTAAAATAACAGGATGGCCTCCCTTAAATAGAATGAAAGTGTGGCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAAAATAACAGGATGGCCTCCCTTAAATAGAATGAAAGTGTGGCC  1089

seq1  AAATTCATATCATCTGTTTCTTCCCTTTGGCTTTTTCCAAATGATGACAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATATCATCTGTTTCTTCCCTTTGGCTTTTTCCAAATGATGACAA  1139

seq1  GTTTGGGCTGCTTCAGGATGTGACACTCACTGAATTC  1184
      |||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGCTGCTTCAGGATGTGACACTCACTGAATTC  1176

seq1: chr17_88710704_88711497
seq2: B6Ng01-259J10.g_69_869

seq1  GAATTCTTTTCCTGGGTTCTATGTCTGGGGGAGCAACATCTTATTTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCTGGGTTCTATGTCTGGGGGAGCAACATCTTATTTAGAT  50

seq1  CCGAGGATGATATCTTGTTGAGTGTTGGCTTTATCCTAAAGCATGGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGATGATATCTTGTTGAGTGTTGGCTTTATCCTAAAGCATGGTTGG  100

seq1  AAACTACAGTTCATGGGATCATTCTGCTTGCTTCAGGGACAGTCCAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACAGTTCATGGGATCATTCTGCTTGCTTCAGGGACAGTCCAGGGA  150

seq1  CATGGGAGGGAGGAGAGAGGTCCAGATGCTATGTGGGACTCTACAGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGGGAGGAGAGAGGTCCAGATGCTATGTGGGACTCTACAGACAC  200

seq1  TGGGTTTTTTTTTTCCTCAAATTTTGTCGGACATGACAATTAATTGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTTTTTTTCCTCAAATTTTGTCGGACATGACAATTAATTGTACT  250

seq1  GTATACTGGGTTGGGTTTTTGGTACAGGTGATGGGGAGGATAGCCATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTGGGTTGGGTTTTTGGTACAGGTGATGGGGAGGATAGCCATAAA  300

seq1  GAATATCTAAAAGCTAGACATGGTGGTACCTCAACCCCCTGACCTGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCTAAAAGCTAGACATGGTGGTACCTCAACCCCCTGACCTGCATC  350

seq1  AGACTACATATATTCATTTCCCTGCATCGGGCTACATAAATCCCTATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACATATATTCATTTCCCTGCATCGGGCTACATAAATCCCTATCAC  400

seq1  TGAACAATGGTACAATTTTCCCAACCCAGGCTAACAATCAAATTGGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATGGTACAATTTTCCCAACCCAGGCTAACAATCAAATTGGGACA  450

seq1  GTTACCGTTCAAGTGTCTCCCCAGTGTACCTGGTTATGAAGGACAGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCGTTCAAGTGTCTCCCCAGTGTACCTGGTTATGAAGGACAGAGGG  500

seq1  TTAATCTGACCTGAACTAGTTTGAATTCACATCCAATAAGGCAAAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTGACCTGAACTAGTTTGAATTCACATCCAATAAGGCAAAACTGT  550

seq1  GTCCTGTAGTAATCTCTTAGGGAGAATCTTCTATTCACCATTCTAGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTAGTAATCTCTTAGGGAGAATCTTCTATTCACCATTCTAGGCTT  600

seq1  AGGCATCACTGGGTGTGCATATGACT-AAGATCAAATGCACTATGGGAGA  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGCATCACTGGGTGTGCATATGACTAAAGATCAAATGCACTATGGGAGA  650

seq1  GGCAGGTGCAATAGAGAAATGATTATATAACCTGACCTAGCAAACGAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGCAATAGAGAAATGATTATATAACCTGACCTAGCAAACGAAAC  700

seq1  GGACGA-CCACCCA-GGCTTAGTGACAGTAAAC-AGCTTCTCCTT-CCCT  745
      |||||| ||||||| || ||||||||||||||| ||||||||||| ||||
seq2  GGACGACCCACCCAGGGTTTAGTGACAGTAAACAAGCTTCTCCTTCCCCT  750

seq1  TAATTCCACAGAAAGATGCCCTGGG--CCCTGTGTGTGTGTGTG-TGTGT  792
      ||||||| | ||||||||||| |||  |||||||| |||||||| | |||
seq2  TAATTCCCCCGAAAGATGCCCCGGGGCCCCTGTGT-TGTGTGTGTTTTGT  799

seq1  GT  794
      ||
seq2  GT  801