BAC Information

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BAC

Clone NameB6Ng01-259M16
Chromosome17 (Build37)
Map Location 59,090,691 - 59,217,056
singlet/doubletdoublet
Overlap gene2610034M16Rik, Nudt12, 4930505H01Rik
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259M16.bB6Ng01-259M16.g
ACCGA064882GA064883
length1,1681,104
definitionB6Ng01-259M16.b B6Ng01-259M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,215,882 - 59,217,056)(59,090,691 - 59,091,791)
sequence
gaattctcagcagaaagtcatgggcttttaaggatctgatttataaactg
cgcgatatcaaaccaccacatcctattacattcccacatcttgttgaaga
cccaatataaatgtggacttgaaatcaagcgccccagtgctatgagctag
ccagttttttcacagttgcaattccatagagggaaactgctcttactccc
taacaggtttgagacattgaactgtgactgcttctcttcagtaattttcc
atcaaatgtgcaagctacctcttgacagtgaaacatcacttcttgttcac
attctccggcagacggaaatatcccttctctgtaacaggagtcttgcctt
acttaaataaaaacccaaagttattctctgtagcttcatttcttttccta
aatacttccttattaaggtggaaatgatttcttagctctcaggatcagat
aaggacattcctttttaatattgctgcctgtgtttgaaggaagtatgcta
tttaagctgcactgagtcatccgcgtttagtggctagctttcctgatgac
tgcctatcgactcaccgagatactagcttcaaaagaggacaaaatttaag
tcatacaaagtatgtgaaacactgagtcagtgcatcggggcagctgggac
cagaatattttaaaagcgccccagtgctatgagctagccagttttttcac
agttgcaattccatagagggaaactgctcttactccctaacaggtttgag
acattgaactgtgactgcttctcttcagtaattttccatcaaatgtgcaa
gctacctcttgacagtgaaacatcacttcttgttcacattctccggcaga
cggaaatatcccttctctgtaacaggagtcttgccttacttaaataaaaa
cccaaagttattctctgtagcttcatttcttttcctaaatacttccttat
taagtggaaatgatttcttagctctcagatcagataaggacattcctttt
tatattgctgcctgttgtttgaaggaagtatgctatttgagctgcactga
gtcatccgcgtttagtgctagctttcctgatgactgctattcgacctcac
gagaatctagcttctagaggacaaattaggtcatacaaagttatgtgaaa
actggaatcatgcatcgg

gaattccagattgtgcctcacagatcacgatcctctctgttcagaactgt
tgtgggttattattcctcagaaatgaagaaaaggcatgattccagattgt
gaacatcatgagaacttggctttgaagactactaaagagtaagtaattat
aaagtataattggaatcattcctggatttcaggagtaggttcttaatact
agatcgactctgacgtatttgtgaaaatgctaggaaattataagatcaga
ataccagctattaaaaagaatagggaaacctatcatcttacagtgaaaat
ttaatacactgccctttcataaaaagaaggaaagcattagaatttctgga
taatgtatttttgtccttctttttaacctgctgcatcttttacttatgta
gatgttattttttacttctcagattatatttaaatcgccaggttggagtg
caaggatgtttctttttttataggttgccttagcttgaagtccgaatata
aaggcattttcagaatacctttgtgtatacaaaatgtgggcagaattaaa
agcaagcaggaagtcaaagaaaatcttgagactttgaagtgatggataac
aaggctcctaaaggtggtgaggactttctttatcctcatcaatggcaagt
ggtcttagatgagggtgcccataatatttgtaaaaatattattattataa
acttatgttacttttcagagcttgtaatatgatttacttaattttttctc
ttcatttttttcattcaaacactctggaatgaatcattacatttcatatt
aagtttcttgtgggtcataacaaatgtagcagaaggcaaagcattccgct
tcaggtgcgctcagccatgacctccctgtttggtcagataaggaaaacaa
gcatctgctataaacaaggagacattctttcttattcacaggtccattgc
agcccaaaacaggagtcattaaattcacaaatatctgctgtgcactgctt
taccacctagggatgctcttgtgtactagccaagaacagagagaagtcat
atcccctttgaagttgagtctgaacacttgtgccaaactggcacccattt
gtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59215882_59217056
seq2: B6Ng01-259M16.b_46_1213 (reverse)

seq1  CCGATGCACTGACT-CAGTGTTTCACAT-ACTTTGTATGACTTAAATTTT  48
      |||||||| ||| | |||| |||||||| |||||||||||| |||  |||
seq2  CCGATGCA-TGATTCCAGT-TTTCACATAACTTTGTATGACCTAA--TTT  46

seq1  GTCCTCTTTTGAAGCTAGTATCTCGGTGA-GTCGATAGGCAGTCATCAGG  97
      ||||||  | ||||||||  |||| |||| |||||   ||||||||||||
seq2  GTCCTC--TAGAAGCTAGATTCTC-GTGAGGTCGAATAGCAGTCATCAGG  93

seq1  AAAGCTAGCCACTAAACGCGGATGACTCAGTGCAGCTTAAATAGCATACT  147
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  AAAGCTAG-CACTAAACGCGGATGACTCAGTGCAGCTCAAATAGCATACT  142

seq1  TCCTTCAAAC-ACAGGCAGCAATATTAAAAAGGAATGTCCTTATCTGATC  196
      |||||||||| ||||||||||||| |||||||||||||||||||||||| 
seq2  TCCTTCAAACAACAGGCAGCAATA-TAAAAAGGAATGTCCTTATCTGAT-  190

seq1  CTGAGAGCTAAGAAATCATTTCCACCTTAATAAGGAAGTATTTAGGAAAA  246
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGAGAGCTAAGAAATCATTTCCA-CTTAATAAGGAAGTATTTAGGAAAA  239

seq1  GAAATGAAGCTACAGAGAATAACTTTGGGTTTTTATTTAAGTAAGGCAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAGCTACAGAGAATAACTTTGGGTTTTTATTTAAGTAAGGCAAG  289

seq1  ACTCCTGTTACAGAGAAGGGATATTTCCGTCTGCCGGAGAATGTGAACAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTTACAGAGAAGGGATATTTCCGTCTGCCGGAGAATGTGAACAA  339

seq1  GAAGTGATGTTTCACTGTCAAGAGGTAGCTTGCACATTTGATGGAAAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATGTTTCACTGTCAAGAGGTAGCTTGCACATTTGATGGAAAATT  389

seq1  ACTGAAGAGAAGCAGTCACAGTTCAATGTCTCAAACCTGTTAGGGAGTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAGAAGCAGTCACAGTTCAATGTCTCAAACCTGTTAGGGAGTAA  439

seq1  GAGCAGTTTCCCTCTATGGAATTGCAACTGTGAAAAAACTGGCTAGCTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTTTCCCTCTATGGAATTGCAACTGTGAAAAAACTGGCTAGCTCA  489

seq1  TAGCACTGGGGCGCTTTTAAAATATTCTGGTCCCAGCTGCCCCGATGCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGGGGCGCTTTTAAAATATTCTGGTCCCAGCTGCCCCGATGCAC  539

seq1  TGACTCAGTGTTTCACATACTTTGTATGACTTAAATTTTGTCCTCTTTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGTGTTTCACATACTTTGTATGACTTAAATTTTGTCCTCTTTTG  589

seq1  AAGCTAGTATCTCGGTGAGTCGATAGGCAGTCATCAGGAAAGCTAGCCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGTATCTCGGTGAGTCGATAGGCAGTCATCAGGAAAGCTAGCCAC  639

seq1  TAAACGCGGATGACTCAGTGCAGCTTAAATAGCATACTTCCTTCAAACAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGCGGATGACTCAGTGCAGCTTAAATAGCATACTTCCTTCAAACAC  689

seq1  AGGCAGCAATATTAAAAAGGAATGTCCTTATCTGATCCTGAGAGCTAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCAATATTAAAAAGGAATGTCCTTATCTGATCCTGAGAGCTAAGA  739

seq1  AATCATTTCCACCTTAATAAGGAAGTATTTAGGAAAAGAAATGAAGCTAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTCCACCTTAATAAGGAAGTATTTAGGAAAAGAAATGAAGCTAC  789

seq1  AGAGAATAACTTTGGGTTTTTATTTAAGTAAGGCAAGACTCCTGTTACAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAACTTTGGGTTTTTATTTAAGTAAGGCAAGACTCCTGTTACAG  839

seq1  AGAAGGGATATTTCCGTCTGCCGGAGAATGTGAACAAGAAGTGATGTTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGATATTTCCGTCTGCCGGAGAATGTGAACAAGAAGTGATGTTTC  889

seq1  ACTGTCAAGAGGTAGCTTGCACATTTGATGGAAAATTACTGAAGAGAAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAAGAGGTAGCTTGCACATTTGATGGAAAATTACTGAAGAGAAGC  939

seq1  AGTCACAGTTCAATGTCTCAAACCTGTTAGGGAGTAAGAGCAGTTTCCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGTTCAATGTCTCAAACCTGTTAGGGAGTAAGAGCAGTTTCCCT  989

seq1  CTATGGAATTGCAACTGTGAAAAAACTGGCTAGCTCATAGCACTGGGGCG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAATTGCAACTGTGAAAAAACTGGCTAGCTCATAGCACTGGGGCG  1039

seq1  CTTGATTTCAAGTCCACATTTATATTGGGTCTTCAACAAGATGTGGGAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTCAAGTCCACATTTATATTGGGTCTTCAACAAGATGTGGGAAT  1089

seq1  GTAATAGGATGTGGTGGTTTGATATCGCGCAGTTTATAAATCAGATCCTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGGATGTGGTGGTTTGATATCGCGCAGTTTATAAATCAGATCCTT  1139

seq1  AAAAGCCCATGACTTTCTGCTGAGAATTC  1175
      |||||||||||||||||||||||||||||
seq2  AAAAGCCCATGACTTTCTGCTGAGAATTC  1168


seq1: chr17_59090691_59091791
seq2: B6Ng01-259M16.g_69_1172

seq1  GAATTCCAGATTGTGCCTCACAGATCACGATCCTCTCTGTTCAGAACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATTGTGCCTCACAGATCACGATCCTCTCTGTTCAGAACTGT  50

seq1  TGTGGGTTATTATTCCTCAGAAATGAAGAAAAGGCATGATTCCAGATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTATTATTCCTCAGAAATGAAGAAAAGGCATGATTCCAGATTGT  100

seq1  GAACATCATGAGAACTTGGCTTTGAAGACTACTAAAGAGTAAGTAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCATGAGAACTTGGCTTTGAAGACTACTAAAGAGTAAGTAATTAT  150

seq1  AAAGTATAATTGGAATCATTCCTGGATTTCAGGAGTAGGTTCTTAATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATAATTGGAATCATTCCTGGATTTCAGGAGTAGGTTCTTAATACT  200

seq1  AGATCGACTCTGACGTATTTGTGAAAATGCTAGGAAATTATAAGATCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGACTCTGACGTATTTGTGAAAATGCTAGGAAATTATAAGATCAGA  250

seq1  ATACCAGCTATTAAAAAGAATAGGGAAACCTATCATCTTACAGTGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGCTATTAAAAAGAATAGGGAAACCTATCATCTTACAGTGAAAAT  300

seq1  TTAATACACTGCCCTTTCATAAAAAGAAGGAAAGCATTAGAATTTCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACACTGCCCTTTCATAAAAAGAAGGAAAGCATTAGAATTTCTGGA  350

seq1  TAATGTATTTTTGTCCTTCTTTTTAACCTGCTGCATCTTTTACTTATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATTTTTGTCCTTCTTTTTAACCTGCTGCATCTTTTACTTATGTA  400

seq1  GATGTTATTTTTTACTTCTCAGATTATATTTAAATCGCCAGGTTGGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATTTTTTACTTCTCAGATTATATTTAAATCGCCAGGTTGGAGTG  450

seq1  CAAGGATGTTTCTTTTTTTATAGGTTGCCTTAGCTTGAAGTCCGAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGTTTCTTTTTTTATAGGTTGCCTTAGCTTGAAGTCCGAATATA  500

seq1  AAGGCATTTTCAGAATACCTTTGTGTATACAAAATGTGGGCAGAATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTTTCAGAATACCTTTGTGTATACAAAATGTGGGCAGAATTAAA  550

seq1  AGCAAGCAGGAAGTCAAAGAAAATCTTGAGACTTTGAAGTGATGGATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAGGAAGTCAAAGAAAATCTTGAGACTTTGAAGTGATGGATAAC  600

seq1  AAGGCTCCTAAAGGTGGTGAGGACTTTCTTTATCCTCATCAATGGCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCTAAAGGTGGTGAGGACTTTCTTTATCCTCATCAATGGCAAGT  650

seq1  GGTCTTAGATGAGGGTGCCCATAATATTTGTAAAAATATTATTATTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTAGATGAGGGTGCCCATAATATTTGTAAAAATATTATTATTATAA  700

seq1  ACTTATGTTACTTTTCAGAGCTTGTAATATGATTTACTTAATTTTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTTACTTTTCAGAGCTTGTAATATGATTTACTTAATTTTTTCTC  750

seq1  TTCATTTTTTTCATTCAAACACTCTGGAATGAATCATTACATTTCATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTTTCATTCAAACACTCTGGAATGAATCATTACATTTCATATT  800

seq1  AAGTTTCTTGTGGGTCATAACAAATGTAGCAGAAGGCAAAGCATTCCGC-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGTTTCTTGTGGGTCATAACAAATGTAGCAGAAGGCAAAGCATTCCGCT  850

seq1  TCAGGTGCGCTCAGCCATGACCT-CCTGTTTGGTCAGATAAGGAAAACAA  898
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAGGTGCGCTCAGCCATGACCTCCCTGTTTGGTCAGATAAGGAAAACAA  900

seq1  GCATCTGCTATAAACAAGGAGACATTCTTCCTTATTCACAGGTCCATTGC  948
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCATCTGCTATAAACAAGGAGACATTCTTTCTTATTCACAGGTCCATTGC  950

seq1  AGCCAAAAACAGGAGTCATT-AATTCACAAATATCTGCTGTGCACTGCTT  997
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCCCAAAACAGGAGTCATTAAATTCACAAATATCTGCTGTGCACTGCTT  1000

seq1  TA-CACCTAGGGATGCTCTTGTGTACTAGCAAAG-ACAGAGAAGAGTCAT  1045
      || ||||||||||||||||||||||||||| ||| |||||||  ||||||
seq2  TACCACCTAGGGATGCTCTTGTGTACTAGCCAAGAACAGAGAGAAGTCAT  1050

seq1  ATCCCC-TTGAAGTTTGAGTTCTGAACACTTGTTGCCCAAACTGGCA-CC  1093
      |||||| |||||| ||||| |||||||||||||   ||||||||||| ||
seq2  ATCCCCTTTGAAG-TTGAG-TCTGAACACTTGT--GCCAAACTGGCACCC  1096

seq1  ATTTGTGA  1101
      ||||||||
seq2  ATTTGTGA  1104


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