BAC Information

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BAC

Clone NameB6Ng01-260C19
Chromosome17 (Build37)
Map Location 43,621,496 - 43,763,204
singlet/doubletdoublet
Overlap geneMep1a, LOC100043332, Pla2g7, Tdrd6
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116
Downstream geneSlc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5, Runx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260C19.bB6Ng01-260C19.g
ACCGA065161GA065162
length1,1621,138
definitionB6Ng01-260C19.b B6Ng01-260C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,621,496 - 43,622,219)(43,762,063 - 43,763,204)
sequence
gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtggaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ccaaaaccatccagtggaagaaagacagcattttcataaatgtcaagacg
tcttaagaaaaagcacacagtaacaatttcctatcgtcaccaacaggcag
tgggggaaactgcacttatacattttcaataaagaaagcaaatagtgcaa
attagttagatctctgtgattcaccaattaccacctcagatcagagacaa
aggtgaggacaaacctggagactgtcagctgggaggaggtggctcctgcc
ttatctggaatg
gaattcccacaaaagacaatagctcctggctttaagacctctgtgtatgt
ttctcatattaacgacctttcagatttttacatccagctgatagaagatg
aagctgagatcaacaacctctcagagagactaaatgatgtcagaacacgg
ccccagtaccacacaggtccgcagtggcagagcggagatgtgatatgtgc
cgttttcccagaggataacttatggtaccgagcgcttgtcatggaacagc
agcccaatggccttctctctgtccagtttatcgattatggcaacatgtct
gtggttcacactaacagaaccggtcggcttggccctgttgacgcggtgtt
acctgcactgtgcctccattgctccctatgggggctttcggtacctgtgt
gtaaggaaatggtaagctacttttcccagaggacagacgaggctcagata
agatgtgaatttgttaaattccaaggcacctgggaagtgatcctcgcaga
tgagcacggagtcatagctgaagatatgattagcaggtttccatgcaatg
gaaactctcaagcagggcttaccacccagaccatgaaaggggactgtttg
aagatagctaacaaacccaacgctgatacctcagtgcttcttaactggta
taaccccaaagcaaaactgataaaagcctacgctaccgtgatagacgggc
ctgagtacttttggtgtcagtttgccgattccgagaagctgcagtatctg
gaaacggaggttcaaagtgctggcaagcagctctctgacagaagaagctg
cacccaatgtccacaaattggagatccgtgcatcgtgaggtacagagaag
acgggcattactacagagccctcatcactaacatctgtgatggtgagctt
gcgtcggtcaggcttgtggactttgggaatgcggaggactgtgtggacgc
caaggagctttggagcatcctctgagcttctgctggtcccaatgcaagca
tttcatgctgctcgctggattctcagtctctggcggtgtggtgccctcag
aggatgattatttttatgacatagtcacaagaggacgtgttgacataccg
aatcctgcagaattaaaggagaacgttggcaacatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_43621496_43622219
seq2: B6Ng01-260C19.b_491_1205

seq1  GCGTGACTCTAACGAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGACTCTAACGAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAG  50

seq1  TCCCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCC  100

seq1  ATGCTCATGGATTGGCAGGACCAACATTGTAAAAATGGCTATCTTGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATGGATTGGCAGGACCAACATTGTAAAAATGGCTATCTTGCCAA  150

seq1  AAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCCAACTCAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCCAACTCAATTC  200

seq1  TTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAA  250

seq1  ACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAA  300

seq1  TCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACT  350

seq1  GCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGAATAGAATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGAATAGAATTGA  400

seq1  AGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGG  450

seq1  GAGCCAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAATAAATGTCAA  500
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAGCCAAAACCATCCAGTGGAAGAAAGACAGCATTTTC-ATAAATGTCAA  499

seq1  GACGTCTTAAGAAAAAGCACACAGTAACAATTTCCTATCGTCACCAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCTTAAGAAAAAGCACACAGTAACAATTTCCTATCGTCACCAACAG  549

seq1  GCAGTGGGGGAAACTGCACTTATACATTTTCAATAAAGAAAGCAAATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGGGAAACTGCACTTATACATTTTCAATAAAGAAAGCAAATAGT  599

seq1  GCAAATTAGTTAGATCTCTGTTGATTCACCAATTACACACTCAGGATCAG  650
      |||||||||||||||||||| |||||||||||||||   |||| ||||||
seq2  GCAAATTAGTTAGATCTCTG-TGATTCACCAATTACCACCTCA-GATCAG  647

seq1  GAAGGACAAGGTGAGGACAAACTGAGAAGGACTGTCCAGCTGGGAGGA-G  699
        ||   |||||||||||||||   ||  |||||| |||||||||||| |
seq2  --AGACAAAGGTGAGGACAAACCTGGA--GACTGT-CAGCTGGGAGGAGG  692

seq1  TGGCTCCTGCCTTTAATCTGAAATG  724
      |||||||||||||  ||||| ||||
seq2  TGGCTCCTGCCTT--ATCTGGAATG  715

seq1: chr17_43762063_43763204
seq2: B6Ng01-260C19.g_65_1202 (reverse)

seq1  GGGATGTTGCAAACG-TCTCTTTTAA-TCTCCAAGA-TCGTTATGTCCAA  47
      |||||||||| |||| |||| ||||| ||| || || ||| ||||| |||
seq2  GGGATGTTGCCAACGTTCTCCTTTAATTCTGCAGGATTCGGTATGT-CAA  49

seq1  CACGTCCTC-TGTGACTATGTCATAAAAATAATCATTCCCTTCTTGAGGG  96
      ||||||||| |||||||||||||||||||||||||| | |    ||||||
seq2  CACGTCCTCTTGTGACTATGTCATAAAAATAATCATCCTC----TGAGGG  95

seq1  CA-CACACCGCCAGAGACTGAGAATCCAGCGAGGCAGCATGGAAATGCTT  145
      || ||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  CACCACACCGCCAGAGACTGAGAATCCAGCGA-GCAGCAT-GAAATGCTT  143

seq1  GCATGGGGACCAGCAGAAGCTCAGAAGGGATGCTCCAAAGCTCCTTGGCG  195
      |||| ||||||||||||||||||||  |||||||||||||||||||||||
seq2  GCATTGGGACCAGCAGAAGCTCAGA--GGATGCTCCAAAGCTCCTTGGCG  191

seq1  TCCACACAGTCCTCCGCATTCCCAAAGTCCACAAGCCTGACCGACGCAAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACAGTCCTCCGCATTCCCAAAGTCCACAAGCCTGACCGACGCAAG  241

seq1  CTCACCATCACAGATGTTAGTGATGAGGGCTCTGTAGTAATGCCCGTCTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATCACAGATGTTAGTGATGAGGGCTCTGTAGTAATGCCCGTCTT  291

seq1  CTCTGTACCTCACGATGCACGGATCTCCAATTTGTGGACATTGGGTGCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACCTCACGATGCACGGATCTCCAATTTGTGGACATTGGGTGCAG  341

seq1  CTTCTTCTGTCAGAGAGCTGCTTGCCAGCACTTTGAACCTCCGTTTCCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTGTCAGAGAGCTGCTTGCCAGCACTTTGAACCTCCGTTTCCAG  391

seq1  ATACTGCAGCTTCTCGGAATCGGCAAACTGACACCAAAAGTACTCAGGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCAGCTTCTCGGAATCGGCAAACTGACACCAAAAGTACTCAGGCC  441

seq1  CGTCTATCACGGTAGCGTAGGCTTTTATCAGTTTTGCTTTGGGGTTATAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTATCACGGTAGCGTAGGCTTTTATCAGTTTTGCTTTGGGGTTATAC  491

seq1  CAGTTAAGAAGCACTGAGGTATCAGCGTTGGGTTTGTTAGCTATCTTCAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGAAGCACTGAGGTATCAGCGTTGGGTTTGTTAGCTATCTTCAA  541

seq1  ACAGTCCCCTTTCATGGTCTGGGTGGTAAGCCCTGCTTGAGAGTTTCCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCCCTTTCATGGTCTGGGTGGTAAGCCCTGCTTGAGAGTTTCCAT  591

seq1  TGCATGGAAACCTGCTAATCATATCTTCAGCTATGACTCCGTGCTCATCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGAAACCTGCTAATCATATCTTCAGCTATGACTCCGTGCTCATCT  641

seq1  GCGAGGATCACTTCCCAGGTGCCTTGGAATTTAACAAATTCACATCTTAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGATCACTTCCCAGGTGCCTTGGAATTTAACAAATTCACATCTTAT  691

seq1  CTGAGCCTCGTCTGTCCTCTGGGAAAAGTAGCTTACCATTTCCTTACACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTCGTCTGTCCTCTGGGAAAAGTAGCTTACCATTTCCTTACACA  741

seq1  CAGGTACCGAAAGCCCCCATAGGGAGCAATGGAGGCACAGTGCAGGTAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACCGAAAGCCCCCATAGGGAGCAATGGAGGCACAGTGCAGGTAAC  791

seq1  ACCGCGTCAACAGGGCCAAGCCGACCGGTTCTGTTAGTGTGAACCACAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCGTCAACAGGGCCAAGCCGACCGGTTCTGTTAGTGTGAACCACAGA  841

seq1  CATGTTGCCATAATCGATAAACTGGACAGAGAGAAGGCCATTGGGCTGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGCCATAATCGATAAACTGGACAGAGAGAAGGCCATTGGGCTGCT  891

seq1  GTTCCATGACAAGCGCTCGGTACCATAAGTTATCCTCTGGGAAAACGGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATGACAAGCGCTCGGTACCATAAGTTATCCTCTGGGAAAACGGCA  941

seq1  CATATCACATCTCCGCTCTGCCACTGCGGACCTGTGTGGTACTGGGGCCG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACATCTCCGCTCTGCCACTGCGGACCTGTGTGGTACTGGGGCCG  991

seq1  TGTTCTGACATCATTTAGTCTCTCTGAGAGGTTGTTGATCTCAGCTTCAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGACATCATTTAGTCTCTCTGAGAGGTTGTTGATCTCAGCTTCAT  1041

seq1  CTTCTATCAGCTGGATGTAAAAATCTGAAAGGTCGTTAATATGAGAAACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCAGCTGGATGTAAAAATCTGAAAGGTCGTTAATATGAGAAACA  1091

seq1  TACACAGAGGTCTTAAAGCCAGGAGCTATTGTCTTTTGTGGGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGGTCTTAAAGCCAGGAGCTATTGTCTTTTGTGGGAATTC  1138