BAC Information

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BAC

Clone NameB6Ng01-261C15
Chromosome17 (Build37)
Map Location 58,586,562 - 58,725,204
singlet/doubletdoublet
Overlap geneLOC620408, EG545216
Upstream geneEmr1, EG224916, Cntnap5c, LOC674419
Downstream geneLOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261C15.bB6Ng01-261C15.g
ACCGA065901GA065902
length1,170461
definitionB6Ng01-261C15.b B6Ng01-261C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,724,043 - 58,725,204)(58,586,562 - 58,587,022)
sequence
gaattcactgaattcctaactattcattggagtggaattattaagcacct
ggaagccctccttaacataccactaagtaattgtggttttcaaaacaaaa
caaaaatttaagttcaagattgcttattggtagggaatgaatagccatca
agtttttattttctttttttaatcttaatgacacagtaaatggaattgtt
ggaaatttgggggaaaggagacaattaaaatatttacttagagggccaga
gagaaagctcagtgattaaacacaactggtgtaaacctaaaacctgaagt
caatccccagaacctacatagcagaaaaagagaagtaatccctttaaatt
gtcccttgaccttcacaggtaccatggcacatgaagacgaatggacagat
acaaacattacatacattaaacaaatataaagactttaaattgtctttgt
ttttaattgtctaaattgtttttagttatctttttaagatagtctatcaa
cagctttacagtgatataaatcagttatctctaaagtgagttgtgatgtt
taagcaccaaatctggtttcattttctatacaggtgtctggacattactc
agtgtgagcaatgtgttgatagaaataatgctattaagtttagacatcag
taaccaatcaccaagaagactgagacaacacaaatcgtgaaatggagact
tccagggcaaagattccctgacaccaagtgtgtggatggctttcttttcc
ataggagacccaagtggaataaggaatgctgacataaataggtataaata
tatacattattgctcatatataatttgcatctcagaaactgctgaataaa
ctcaccatttctaatcctttctgaactgaggctggctgattcaagtcagc
tattatgcctccaactcctctccaagctgactgatttaagcttctcactg
aactgctctgctgaggctcaattaactgtggaaatttgatctaatcatct
gcctccttattattctcttgcttcaactcccctctgcttgaaatcatgaa
caaactgaactccactgcacttcacctcactgtagaagggattgaaggtg
tggtactaaagggggtggtctgttattccacctggaattacgaagaacat
agagggaccttcattctgtt

ctattggaaaggaggaagttgagtttgcaggtttgccaaggcctacatga
ccttcctcaggtagaggatatgggggccaggctccccagacaagttcaga
gaaaaggaagtcctgctgatagagggagtcctccattttgtaccaagctg
agcagaattatccagatatggtagactgctactttttttttaaaccaggg
tttctctatatatgtcaaataaaactaattagttgacataaaactacttc
caatggtttactttatgcactgtagaaattacaaacaaaattgagatgta
gttagctacaaaactagaagtgaaacatctcagtggaatcttttgtgtgc
atgtgtgtgtgggtatgtgtgcatgtctctctctctctctctctctctct
ctctctctctctctctctctctctctgtgtgtgcgtttgcgtgtgtgcgt
gtgcgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58724043_58725204
seq2: B6Ng01-261C15.b_51_1220 (reverse)

seq1  AACAGATGGAAGGGCCCTCTA-GTTCTCTGTAA-TCCAGGTGGAAT-ACA  47
      ||||||  ||||| ||||||| |||||  |||| |||||||||||| |||
seq2  AACAGAATGAAGGTCCCTCTATGTTCTTCGTAATTCCAGGTGGAATAACA  50

seq1  GACCACCCC--TTAGTA-CACACTTTCAATCCC-TCTACAGTGA-GTGTA  92
      |||||||||  |||||| ||||| ||||||||| |||||||||| ||| |
seq2  GACCACCCCCTTTAGTACCACACCTTCAATCCCTTCTACAGTGAGGTGAA  100

seq1  GTGCAGTGGAGTTCAGTTTGTTCATGATTTCAAGCAGA-GGGAGTTGAAG  141
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTGCAGTGGAGTTCAGTTTGTTCATGATTTCAAGCAGAGGGGAGTTGAAG  150

seq1  CAAGAGAATAATAAGGAGGCAGATGATTAGATCAAATTTCCACAGTTAAT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAAGAGAATAATAAGGAGGCAGATGATTAGATCAAATTTCCACAGTTAA-  199

seq1  TTGAGCCTCAGCAGAGCAGTTCAGTGAGAAGCTTAAATCAGTCAGCTTGG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCTCAGCAGAGCAGTTCAGTGAGAAGCTTAAATCAGTCAGCTTGG  249

seq1  AGAGGAGTTGGAGGCATAATAGCTGACTTGAATCAGCCAGCCTCAGTTCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTTGGAGGCATAATAGCTGACTTGAATCAGCCAGCCTCAGTTCA  299

seq1  GAAAGGATTAGAAATGGTGAGTTTATTCAGCAGTTTCTGAGATGCAAATT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATTAGAAATGGTGAGTTTATTCAGCAGTTTCTGAGATGCAAATT  349

seq1  ATATATGAGCAATAATGTATATATTTATACCTATTTATGTCAGCATTCCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAGCAATAATGTATATATTTATACCTATTTATGTCAGCATTCCT  399

seq1  TATTCCACTTGGGTCTCCTATGGAAAAGAAAGCCATCCACACACTTGGTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACTTGGGTCTCCTATGGAAAAGAAAGCCATCCACACACTTGGTG  449

seq1  TCAGGGAATCTTTGCCCTGGAAGTCTCCATTTCACGATTTGTGTTGTCTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAATCTTTGCCCTGGAAGTCTCCATTTCACGATTTGTGTTGTCTC  499

seq1  AGTCTTCTTGGTGATTGGTTACTGATGTCTAAACTTAATAGCATTATTTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTTGGTGATTGGTTACTGATGTCTAAACTTAATAGCATTATTTC  549

seq1  TATCAACACATTGCTCACACTGAGTAATGTCCAGACACCTGTATAGAAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACACATTGCTCACACTGAGTAATGTCCAGACACCTGTATAGAAAA  599

seq1  TGAAACCAGATTTGGTGCTTAAACATCACAACTCACTTTAGAGATAACTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAGATTTGGTGCTTAAACATCACAACTCACTTTAGAGATAACTG  649

seq1  ATTTATATCACTGTAAAGCTGTTGATAGACTATCTTAAAAAGATAACTAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATCACTGTAAAGCTGTTGATAGACTATCTTAAAAAGATAACTAA  699

seq1  AAACAATTTAGACAATTAAAAACAAAGACAATTTAAAGTCTTTATATTTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTAGACAATTAAAAACAAAGACAATTTAAAGTCTTTATATTTG  749

seq1  TTTAATGTATGTAATGTTTGTATCTGTCCATTCGTCTTCATGTGCCATGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTATGTAATGTTTGTATCTGTCCATTCGTCTTCATGTGCCATGG  799

seq1  TACCTGTGAAGGTCAAGGGACAATTTAAAGGGATTACTTCTCTTTTTCTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTGAAGGTCAAGGGACAATTTAAAGGGATTACTTCTCTTTTTCTG  849

seq1  CTATGTAGGTTCTGGGGATTGACTTCAGGTTTTAGGTTTACACCAGTTGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGGTTCTGGGGATTGACTTCAGGTTTTAGGTTTACACCAGTTGT  899

seq1  GTTTAATCACTGAGCTTTCTCTCTGGCCCTCTAAGTAAATATTTTAATTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATCACTGAGCTTTCTCTCTGGCCCTCTAAGTAAATATTTTAATTG  949

seq1  TCTCCTTTCCCCCAAATTTCCAACAATTCCATTTACTGTGTCATTAAGAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTCCCCCAAATTTCCAACAATTCCATTTACTGTGTCATTAAGAT  999

seq1  TAAAAAAAGAAAATAAAAACTTGATGGCTATTCATTCCCTACCAATAAGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAGAAAATAAAAACTTGATGGCTATTCATTCCCTACCAATAAGC  1049

seq1  AATCTTGAACTTAAATTTTTGTTTTGTTTTGAAAACCACAATTACTTAGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGAACTTAAATTTTTGTTTTGTTTTGAAAACCACAATTACTTAGT  1099

seq1  GGTATGTTAAGGAGGGCTTCCAGGTGCTTAATAATTCCACTCCAATGAAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTTAAGGAGGGCTTCCAGGTGCTTAATAATTCCACTCCAATGAAT  1149

seq1  AGTTAGGAATTCAGTGAATTC  1162
      |||||||||||||||||||||
seq2  AGTTAGGAATTCAGTGAATTC  1170


seq1: chr17_58586562_58587022
seq2: B6Ng01-261C15.g_66_532

seq1  GAATTCCTATTGGAAAGGAGGAAGTTGAGTTTGCAGGTTTGCCAAGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTGGAAAGGAGGAAGTTGAGTTTGCAGGTTTGCCAAGGCCT  50

seq1  ACATGACCTTCCTCAGGTAGAGGATATGGGGGCCAGGCTCCCCAGACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACCTTCCTCAGGTAGAGGATATGGGGGCCAGGCTCCCCAGACAAG  100

seq1  TTCAGAGAAAAGGAAGTCCTGCTGATAGAGGGAGTCCTCCATTTTGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAAAAGGAAGTCCTGCTGATAGAGGGAGTCCTCCATTTTGTACC  150

seq1  AAGCTGAGCAGAATTATCCAGATATGGTAGACTGCTACTTTTTTTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGCAGAATTATCCAGATATGGTAGACTGCTACTTTTTTTTTAAA  200

seq1  CCAGGGTTTCTCTATATATGTCAAATAAAACTAATTAGTTGACATAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTTCTCTATATATGTCAAATAAAACTAATTAGTTGACATAAAAC  250

seq1  TACTTCCAATGGTTTACTTTATGCACTGTAGAAATTACAAACAAAATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCAATGGTTTACTTTATGCACTGTAGAAATTACAAACAAAATTGA  300

seq1  GATGTAGTTAGCTACAAAACTAGAAGTGAAACATCTCAGTGGAATCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGTTAGCTACAAAACTAGAAGTGAAACATCTCAGTGGAATCTTTT  350

seq1  GTGTGCATGTGTGTGTGGGTATGTGTGCATGTCTCTCTCTCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGTGTGTGTGGGTATGTGTGCATGTCTCTCTCTCTCTCTCTCT  400

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTG------TGTGTGT  444
      |||||||||||||||||||||||||||||||||||||      || ||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGCGTTTGCGTGT  450

seq1  GTGTGTGTGTGTGTGTG  461
      ||| ||||| |||||||
seq2  GTGCGTGTGCGTGTGTG  467


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