BAC Information

Click to search

BAC

Clone NameB6Ng01-261G20
Chromosome17 (Build37)
Map Location 37,086,631 - 37,245,682
singlet/doubletdoublet
Overlap genePpp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91
Upstream geneLOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31
Downstream geneOlfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261G20.bB6Ng01-261G20.g
ACCGA066100GA066101
length8831,138
definitionB6Ng01-261G20.b B6Ng01-261G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,244,813 - 37,245,682)(37,086,631 - 37,087,771)
sequence
gaattcttatttgctgatggtgcagttaacatccccggaaagggaaggag
atgacttgtgatatcttagtggaagaacatttgcctagcatgtgtgagtc
tttaagttgaattttcagcactagaagaaaacaagtgtgttaaacagatg
attcagccattaagaacatgcactactcttatagagcttccagcacccat
atcagaaggctcttaacccaagaccggggaatctgacacccctggttgct
ataaacacctgcatatacatatacctacttgtataaacacacagagaagt
attaaaaataataaaacaaatatttttgtgaaattcagtaaagacagaat
ggatgggtgagaaacttgggaaaatatccctaaagaaattgtcaatatat
ttgaaataaataaaactcaccatttcaagaacaggagatgagccataaaa
taaattccatttattcaacattttaaaaaatattactgaacctaagaaag
aatgatgtcagtctgagacatgttagtcaggagctggtcccaacatgcct
ccaaggatagcgtgaaacaaggttattcagatattcagacaggacacagg
gaccaggagttctggtgaggatgaaactgttcttattttggagcagaaat
taataataataataataatatacacttgggaggctatcaaaaagcaacaa
tgcctcagtagcttacaactagaaaatgtcaacagagtagcaaagtctga
ggtttgcagtattgtttttgaagcaaacaactgacctgctaatcaggcaa
aatatgtttacagcaaattctttttttttttttttttaagtaagtggtaa
gtagctgccttccgaaactccataaagagggag
gaattcaagagagagtcggaaaaacctgactcccattctgccatggcttg
cccccgcccccacccctaactccaggcagttggtaccgcatagttttatt
cccacctatttttctttccaaccaagaactcgatagagctataaagcaac
agtgagatggtggccagggacactgggccacccacactcacatttcgacg
agcgtcgccccatatgctcattgtccacagtgtcactggaccactccacc
ttcttctctggcttgcgtttccgaagtttcatagttaggctctgattctc
ctgaaaagttaaaagaggtgtgggcccatctgactcacttcctcttgatt
tttcctgtttcctatggaacctccttttttctcttccctggctcagtcag
taacacacatcatgcccctggagaggcaggacagcctgtttgtggagagt
atgaatccctgttcttgataaccaatagtatgcaaagaaggcaattctta
aactagggaaggtgccagcaaattggcaaactaagatacaaccaacgcta
tcacccttggtggcattaatatatgaatgttattttctccctttcctgtg
actggcctttgatctcactttcttcttcacacctcttattcatgttctaa
agagactgaggtatgtaatctcagcacttgggagactgaaatggcctctg
caacatggtatagctattttctcagaaaaaaataaaataaaataaagcag
ggatggggagacatctctgttggtaaagctcttttggtgcaagcatgaag
acctgagtttgatcccttgtatccacgggaacaaaaacaacaacaaaaag
tcaaatgtggtggtgggtgggtggtgcaaaaaggcagatctcttgctagc
cagactagcctatttggccagctccaggcacaatgactctgtatcataag
taaataaataaataaataaatatagaccatgtctcagacatctgagttaa
cttcaggcctaccccacatcacacacacaccactcaatatcaaattaaac
aattatccaaaccctcctctacaaaagcttcattctttctctctcatctt
caggcccagggctccttaatctattccacttaattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_37244813_37245682
seq2: B6Ng01-261G20.b_44_926 (reverse)

seq1  CTCCCTC-TTATGGAGTCTCTGAAGACAGCTACTTA-CACTTACTT--AA  46
      ||||||| ||||||||| || |||| |||||||||| |||||||||  ||
seq2  CTCCCTCTTTATGGAGTTTCGGAAGGCAGCTACTTACCACTTACTTAAAA  50

seq1  AAAAAAAAAAAAAGAATTTGCTGT-TACAT-TTTTGCCTGATTTGCAGGT  94
      ||||||||||||||||||||||||  |||| |||||||||||| ||||||
seq2  AAAAAAAAAAAAAGAATTTGCTGTAAACATATTTTGCCTGATTAGCAGGT  100

seq1  CAGTTGTTTGCT--CAAAACAATACTGC-AACCTCAGAC-TTGCTACTCT  140
      ||||||||||||   ||||||||||||| |||||||||| ||||||||||
seq2  CAGTTGTTTGCTTCAAAAACAATACTGCAAACCTCAGACTTTGCTACTCT  150

seq1  GTTGACATTTTCTAGTTGTAAGCTACTGAGGCATTGTTGC-TTTTGATAG  189
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTGACATTTTCTAGTTGTAAGCTACTGAGGCATTGTTGCTTTTTGATAG  200

seq1  CCT-CCAAGTGTATATTATTATTATTATTATTAATTTCTGCTCC-AAATA  237
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTCCCAAGTGTATATTATTATTATTATTATTAATTTCTGCTCCAAAATA  250

seq1  AGAACAGTTTCATCCTCACCAGAACTCCTGGTCCCTGTGTCCTGTCTGAA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGTTTCATCCTCACCAGAACTCCTGGTCCCTGTGTCCTGTCTGAA  300

seq1  TATCTGAATAACCTTGTTTCACGCTATCCTTGGAGGCATGTTGGGACCAG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAATAACCTTGTTTCACGCTATCCTTGGAGGCATGTTGGGACCAG  350

seq1  CTCCTGACTAACATGTCTCAGACTGACATCATTCTTTCTTAGGTTCAGTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACTAACATGTCTCAGACTGACATCATTCTTTCTTAGGTTCAGTA  400

seq1  ATATTTTTTAAAATGTTGAATAAATGGAATTTATTTTATGGCTCATCTCC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTAAAATGTTGAATAAATGGAATTTATTTTATGGCTCATCTCC  450

seq1  TGTTCTTGAAATGGTGAGTTTTATTTATTTCAAATATATTGACAATTTCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGAAATGGTGAGTTTTATTTATTTCAAATATATTGACAATTTCT  500

seq1  TTAGGGATATTTTCCCAAGTTTCTCACCCATCCATTCTGTCTTTACTGAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATATTTTCCCAAGTTTCTCACCCATCCATTCTGTCTTTACTGAA  550

seq1  TTTCACAAAAATATTTGTTTTATTATTTTTAATACTTCTCTGTGTGTTTA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAAAATATTTGTTTTATTATTTTTAATACTTCTCTGTGTGTTTA  600

seq1  TACAAGTAGGTATATGTATATGCAGGTGTTTATAGCAACCAGGGGTGTCA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTAGGTATATGTATATGCAGGTGTTTATAGCAACCAGGGGTGTCA  650

seq1  GATTCCCCGGTCTTGGGTTAAGAGCCTTCTGATATGGGTGCTGGAAGCTC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCCGGTCTTGGGTTAAGAGCCTTCTGATATGGGTGCTGGAAGCTC  700

seq1  TATAAGAGTAGTGCATGTTCTTAATGGCTGAATCATCTGTTTAACACACT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGTAGTGCATGTTCTTAATGGCTGAATCATCTGTTTAACACACT  750

seq1  TGTTTTCTTCTAGTGCTGAAAATTCAACTTAAAGACTCACACATGCTAGG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTCTAGTGCTGAAAATTCAACTTAAAGACTCACACATGCTAGG  800

seq1  CAAATGTTCTTCCACTAAGATATCACAAGTCATCTCCTTCCCTTTCCGGG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTCTTCCACTAAGATATCACAAGTCATCTCCTTCCCTTTCCGGG  850

seq1  GATGTTAACTGCACCATCAGCAAATAAGAATTC  870
      |||||||||||||||||||||||||||||||||
seq2  GATGTTAACTGCACCATCAGCAAATAAGAATTC  883

seq1: chr17_37086631_37087771
seq2: B6Ng01-261G20.g_66_1203

seq1  GAATTCAAGAGAGAGTCGGAAAAACCTGACTCCCATTCTGCCATGGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGAGAGTCGGAAAAACCTGACTCCCATTCTGCCATGGCTTG  50

seq1  CCCCCGCCCCCACCCCTAACTCCAGGCAGTTGGTACCGCATAGTTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGCCCCCACCCCTAACTCCAGGCAGTTGGTACCGCATAGTTTTATT  100

seq1  CCCACCTATTTTTCTTTCCAACCAAGAACTCGATAGAGCTATAAAGCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTATTTTTCTTTCCAACCAAGAACTCGATAGAGCTATAAAGCAAC  150

seq1  AGTGAGATGGTGGCCAGGGACACTGGGCCACCCACACTCACATTTCGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATGGTGGCCAGGGACACTGGGCCACCCACACTCACATTTCGACG  200

seq1  AGCGTCGCCCCATATGCTCATTGTCCACAGTGTCACTGGACCACTCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCGCCCCATATGCTCATTGTCCACAGTGTCACTGGACCACTCCACC  250

seq1  TTCTTCTCTGGCTTGCGTTTCCGAAGTTTCATAGTTAGGCTCTGATTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTGGCTTGCGTTTCCGAAGTTTCATAGTTAGGCTCTGATTCTC  300

seq1  CTGAAAAGTTAAAAGAGGTGTGGGCCCATCTGACTCACTTCCTCTTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGTTAAAAGAGGTGTGGGCCCATCTGACTCACTTCCTCTTGATT  350

seq1  TTTCCTGTTTCCTATGGAACCTCCTTTTTTCTCTTCCCTGGCTCAGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTTCCTATGGAACCTCCTTTTTTCTCTTCCCTGGCTCAGTCAG  400

seq1  TAACACACATCATGCCCCTGGAGAGGCAGGACAGCCTGTTTGTGGAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACACATCATGCCCCTGGAGAGGCAGGACAGCCTGTTTGTGGAGAGT  450

seq1  ATGAATCCCTGTTCTTGATAACCAATAGTATGCAAAGAAGGCAATTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCCCTGTTCTTGATAACCAATAGTATGCAAAGAAGGCAATTCTTA  500

seq1  AACTAGGGAAGGTGCCAGCAAATTGGCAAACTAAGATACAACCAACGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGGAAGGTGCCAGCAAATTGGCAAACTAAGATACAACCAACGCTA  550

seq1  TCACCCTTGGTGGCATTAATATATGAATGTTATTTTCTCCCTTTCCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTTGGTGGCATTAATATATGAATGTTATTTTCTCCCTTTCCTGTG  600

seq1  ACTGGCCTTTGATCTCACTTTCTTCTTCACACCTCTTATTCATGTTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCTTTGATCTCACTTTCTTCTTCACACCTCTTATTCATGTTCTAA  650

seq1  AGAGACTGAGGTATGTAATCTCAGCACTTGGGAGACTGAAATGGCCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGAGGTATGTAATCTCAGCACTTGGGAGACTGAAATGGCCTCTG  700

seq1  CAACATGGTATAGCTATTTTCTCAGAAAAAAATAAAATAAAATAAAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGTATAGCTATTTTCTCAGAAAAAAATAAAATAAAATAAAGCAG  750

seq1  GGATGGGGAGACATCTCTGTTGGTAAAGCTCTTTTGGTGCAAGCATGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGAGACATCTCTGTTGGTAAAGCTCTTTTGGTGCAAGCATGAAG  800

seq1  ACCTGAGTTTGATCCCTTGTATCCACGGGAACAAAAACAACAACAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGTTTGATCCCTTGTATCCACGGGAACAAAAACAACAACAAAAAG  850

seq1  TCAAATGTGGTGGTGG--TGGTGGTGCAAAAAGGCAGATCTCTTGCTAGC  898
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  TCAAATGTGGTGGTGGGTGGGTGGTGCAAAAAGGCAGATCTCTTGCTAGC  900

seq1  CAGACTAGCCTATTTGGCCAGCTCCAGGCACAATGACTCTGTATCATAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAGCCTATTTGGCCAGCTCCAGGCACAATGACTCTGTATCATAAG  950

seq1  TAAATAAATAAATAAATAAATATAGACCATGTCTCAGACATCTGAGGTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAATAAATAAATAAATAAATATAGACCATGTCTCAGACATCTGA-GTTA  999

seq1  ACTTCAGGCCTACACACACA-CACACACACA-CACAC-ATATCAAAATAA  1045
      ||||||||||||| | |||| |||||||||| ||| | ||||| |||| |
seq2  ACTTCAGGCCTAC-CCCACATCACACACACACCACTCAATATC-AAATTA  1047

seq1  AACAAATATCCAAAACCCTCCTTCTACAAAAAAGCCTTCATTCTTTCTTC  1095
      ||||| ||||| ||||||||| |||||||||    |||||||||||| ||
seq2  AACAATTATCC-AAACCCTCC-TCTACAAAA---GCTTCATTCTTTC-TC  1091

seq1  TCTCATCTTCAAGCCCAGGGCTCCCTAATCCTATCCACTT-ATTCTT  1141
      ||||||||||| |||||||||||| |||||   ||||||| ||||||
seq2  TCTCATCTTCAGGCCCAGGGCTCCTTAATCTATTCCACTTAATTCTT  1138