BAC Information

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BAC

Clone NameB6Ng01-263H12
Chromosome17 (Build37)
Map Location 56,626,686 - 56,747,595
singlet/doubletdoublet
Overlap geneZnrf4, Safb2, Safb, 2410015M20Rik
Upstream geneSt6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592
Downstream geneRpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263H12.bB6Ng01-263H12.g
ACCGA067628GA067629
length421822
definitionB6Ng01-263H12.b B6Ng01-263H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,626,686 - 56,627,112)(56,746,782 - 56,747,595)
sequence
tccccagctcatttcaccctgctcactttctgtctgtcccccacagccgc
tgccagactttcctgctgttttcttctttgtctgattgctgggaccttgt
ctcatatacatttggtactcaatacctgaatgaatcaaaggcagagggag
aagggttgctgaggttttggggccaggtatcccccctcccctttctgagg
gcttttctgtctagtgtgggtggtgtccactgggctgagacaacctcctg
ccggggttgctgtgctggcatggcctgacatttgttaccgggatggaaca
tctggaccgtgtgtggttggcagctggtaaggagccacagcggcaggcag
ccaagccaagcgatgacgtctccgctgtggcacgcccccatgatcaggta
gagcccccttccacgctgccc
gaattccaggccatatgggatatatgagaccttgtctccacaaagaaaag
ctggatattgttatacacacctataatctcagcactgggaagagctgagg
cagaaggactgagagtttgaggataaccttggaatatattagtgagatga
aaccttttaaaacagagcatagggaaggggttgtggtttagatccacact
ggaacttgtccatcaggaaaggctagtcccattcctcctccatgtactgc
tcttgcactccccaggggttggctggctgagtggctctggcaaggtgggg
accttatggcacctgtgtgctgtctctgcaggcatcatctcagtcatgtc
agccttgtcggtggccccctccaaggcccgagaatactccaaggagggct
gggagtacctcaaggaacacagcaagtaatggatgccacctgccccagca
ttatgggggtcaagaccaggatggcagagacatcccagtggggacctcac
tctgagggcagcttccagcattgctggcccaataaaggacttgggaatgg
tccccagccggttttctggtgggggggggatgtagagcctttgctttatg
ggcagagtcctggctaacagggatctctatgttccagatgtaatgttttg
gagcccagaaagattttagttttagttttttgttttaacttttaaaaatt
ttgtgtgataaaaaaccatgaccaagaagtagcttggataggaaaagggt
ttatttcagcttgtttactctcaggtcattctccatctactaagggaaag
ttagggcaagaaatctggaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56626686_56627112
seq2: B6Ng01-263H12.b_41_467

seq1  GAATTCTCCCCAGCTCATTTCACCCTGCTCACTTTCTGTCTGTCCCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCCAGCTCATTTCACCCTGCTCACTTTCTGTCTGTCCCCCAC  50

seq1  AGCCGCTGCCAGACTTTCCTGCTGTTTTCTTCTTTGTCTGATTGCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCTGCCAGACTTTCCTGCTGTTTTCTTCTTTGTCTGATTGCTGGGA  100

seq1  CCTTGTCTCATATACATTTGGTACTCAATACCTGAATGAATCAAAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTCATATACATTTGGTACTCAATACCTGAATGAATCAAAGGCAG  150

seq1  AGGGAGAAGGGTTGCTGAGGTTTTGGGGCCAGGTATCCCCCCTCCCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGGGTTGCTGAGGTTTTGGGGCCAGGTATCCCCCCTCCCCTTT  200

seq1  CTGAGGGCTTTTCTGTCTAGTGTGGGTGGTGTCCACTGGGCTGAGACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCTTTTCTGTCTAGTGTGGGTGGTGTCCACTGGGCTGAGACAAC  250

seq1  CTCCTGCCGGGGTTGCTGTGCTGGCATGGCCTGACATTTGTTACCGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCGGGGTTGCTGTGCTGGCATGGCCTGACATTTGTTACCGGGAT  300

seq1  GGAACATCTGGACCGTGTGTGGTTGGCAGCTGGTAAGGAGCCACAGCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATCTGGACCGTGTGTGGTTGGCAGCTGGTAAGGAGCCACAGCGGC  350

seq1  AGGCAGCCAAGCCAAGCGATGACGTCTCCGCTGTGGCACGCCCCCATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCAAGCCAAGCGATGACGTCTCCGCTGTGGCACGCCCCCATGAT  400

seq1  CAGGCAGAGCCCCCTTCCACGCTGCCC  427
      |||| ||||||||||||||||||||||
seq2  CAGGTAGAGCCCCCTTCCACGCTGCCC  427

seq1: chr17_56746782_56747595
seq2: B6Ng01-263H12.g_66_887 (reverse)

seq1  GCCTCCAGA-TTCCTGCCCTAAC-TTCCCTTAGT-GATGGAGAATGACCT  47
      ||||||||| ||| ||||||||| |||||||||| |||||||||||||||
seq2  GCCTCCAGATTTCTTGCCCTAACTTTCCCTTAGTAGATGGAGAATGACCT  50

seq1  GAGAGT-AACAAGCTGAAATAAACCC-TTTCCTATCCAAGCTACTTC-TG  94
      |||||| ||||||||||||||||||| |||||||||||||||||||| ||
seq2  GAGAGTAAACAAGCTGAAATAAACCCTTTTCCTATCCAAGCTACTTCTTG  100

seq1  GTCATGG-TTTTTATCACACAAAATTTTTAAAAGTTAAAACAAAAAACTA  143
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTTTTTTATCACACAAAATTTTTAAAAGTTAAAACAAAAAACTA  150

seq1  AAACTAAAATCTTTCTGGGCTCC-AAACATTACATCTGGAACATAGAGAT  192
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAACTAAAATCTTTCTGGGCTCCAAAACATTACATCTGGAACATAGAGAT  200

seq1  CCCTGTTAGCCAGGACTCTGCCCATAAAGCAAAGGCTCTACATCCCCCCC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTAGCCAGGACTCTGCCCATAAAGCAAAGGCTCTACATCCCCCCC  250

seq1  CCACCAGAAAACCGGCTGGGGACCATTCCCAAGTCCTTTATTGGGCCAGC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGAAAACCGGCTGGGGACCATTCCCAAGTCCTTTATTGGGCCAGC  300

seq1  AATGCTGGAAGCTGCCCTCAGAGTGAGGTCCCCACTGGGATGTCTCTGCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGAAGCTGCCCTCAGAGTGAGGTCCCCACTGGGATGTCTCTGCC  350

seq1  ATCCTGGTCTTGACCCCCATAATGCTGGGGCAGGTGGCATCCATTACTTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGTCTTGACCCCCATAATGCTGGGGCAGGTGGCATCCATTACTTG  400

seq1  CTGTGTTCCTTGAGGTACTCCCAGCCCTCCTTGGAGTATTCTCGGGCCTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCCTTGAGGTACTCCCAGCCCTCCTTGGAGTATTCTCGGGCCTT  450

seq1  GGAGGGGGCCACCGACAAGGCTGACATGACTGAGATGATGCCTGCAGAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGCCACCGACAAGGCTGACATGACTGAGATGATGCCTGCAGAGA  500

seq1  CAGCACACAGGTGCCATAAGGTCCCCACCTTGCCAGAGCCACTCAGCCAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACAGGTGCCATAAGGTCCCCACCTTGCCAGAGCCACTCAGCCAG  550

seq1  CCAACCCCTGGGGAGTGCAAGAGCAGTACATGGAGGAGGAATGGGACTAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCCTGGGGAGTGCAAGAGCAGTACATGGAGGAGGAATGGGACTAG  600

seq1  CCTTTCCTGATGGACAAGTTCCAGTGTGGATCTAAACCACAACCCCTTCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTGATGGACAAGTTCCAGTGTGGATCTAAACCACAACCCCTTCC  650

seq1  CTATGCTCTGTTTTAAAAGGTTTCATCTCACTAATATATTCCAAGGTTAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTCTGTTTTAAAAGGTTTCATCTCACTAATATATTCCAAGGTTAT  700

seq1  CCTCAAACTCTCAGTCCTTCTGCCTCAGCTCTTCCCAGTGCTGAGATTAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTCTCAGTCCTTCTGCCTCAGCTCTTCCCAGTGCTGAGATTAT  750

seq1  AGGTGTGTATAACAATATCCAGCTTTTCTTTGTGGAGACAAGGTCTCATA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTATAACAATATCCAGCTTTTCTTTGTGGAGACAAGGTCTCATA  800

seq1  TATCCCATATGGCCTGGAATTC  814
      ||||||||||||||||||||||
seq2  TATCCCATATGGCCTGGAATTC  822