BAC Information

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BAC

Clone NameB6Ng01-263N09
Chromosome17 (Build37)
Map Location 71,419,697 - 71,558,979
singlet/doubletdoublet
Overlap geneMyom1, Lpin2
Upstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik
Downstream geneEmilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263N09.bB6Ng01-263N09.g
ACCGA067901GA067902
length1,1671,142
definitionB6Ng01-263N09.b B6Ng01-263N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,419,697 - 71,420,833)(71,557,835 - 71,558,979)
sequence
gaattctttttagtgacaggatctctctctgtgttcatatcaagtcatct
gagatagatgaaccaaatagcaaaacgacttggggttgctatagaataaa
aaaattctagctttttaaggaaattgccactctccatgatactatatatg
gttttcatagttacctatatttatataacaattagattgttttaggaaat
gaaatagacagctatatttgactaattgtaatcaataaaacttcaataaa
ttcttttgcatgtcccatccctgacaggatttgcagtatcacagaggggc
ttagaatcctactctctctctctctctctctctctctctctctctcacac
acacacacacacacacacactcattcacacacacaaacacacacacagac
acacatactcacacacacactcacacacactcacacacacagacacacac
actcacacactcacacacacagacacagacacacacacatacacacactc
acacacatagacacagacacagacacactcatactcacacacacactcac
acacactcacacacactcatacacacacacacactcacacacacactcac
acacacacttacacacacacacacacacacacacacacacacacacacac
tctcacacacacagagtgatcttagctcagtgtgctgcagttctgggcta
tcacagtaactgttgtcactgtgatttttgtccctgagtttgtagtacat
catctttttttctctgcttgcctctaagatattgcctctattgctggttt
tagactttgattaccgtgtgcatcactgggtgttgttttcatcctatgta
ttatgtgtaggttcaacacacttctcaagccctgtgggtttgctattggt
ttctttaaatatctttcgctgtatgctccttctccctcctcttcctttaa
ggaggaacttggccaccaacttgaaaattgttccttctgctcattgaatg
ctgtgctccctcagcctttcatcctctgtgcccctgcgccccctctggga
attgttgctaataaattacctccttccccctctcctctaatagaaacagt
taatttttcttgcctttccataccataccgttggtttttaaaaattaaaa
tactaaaaatatgttga
gaattccaggatagccagggctacacagagaaaccctgttttgaacccca
ctccccacctccaaataaaacaaaaaacacaagtagacttagatatgtta
tgatcagaaacctatgtttaaagggtcaagttctaaactttctctccctc
acactcccagctttaaaccttctacttacaatgtgataactatactacta
gtctattttggtagtgataataacttcaaggtctctaaaataaacacaga
agtctggtcctttggcttccacataaagtcatccagttttagtaagttgc
tatagaaaccatgctttctacctcagggatgactattaaatatacgggta
gtacaatgtacaatatacaatttcctttgaagcatccctccttactggag
gttctttttacttatgcactgacttctaagccaagaattaatatgtgctg
gagctgtgggttagcaggtaagactgtggacccaaaagacctcagtttga
actccagctactgtttgatggctcccagccatctgaactgtcatttctgg
gctggagacatggctcaaaggttaagagcactgactgctcttccagaggt
cctgagttcaattcccagcaaccacatggtggctctgtaataagatctac
tgccctcttctggtgtgtctgaagacagctataatgtactcacataaatg
aaataaatcttaaaaaaaattaatatgactcttttagaatcaatacactc
cctgggcttacaacctacattaagattagactgtaaccaggctgaagctg
tcctttgaccaccagagtctaatattcatgtagtcgtagccccaggaaaa
gttaggttaaacctcatttatctttccctcttctcttttcttgccccctt
ccaccccctttaaacagtttaaaatagttttaaagcctagagccaaggga
cactgatactgaggaatcatacaactgtgtgagttcttctagctgaagtc
ctcccctgagtctgatgtgccctggtaaagcccaggagcagtgagccaca
gactccactgtgcttaaagagtatcacagccacttctattacagccagct
attaacacctcgccaggccaaggtcaagtgacagcctcaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_71419697_71420833
seq2: B6Ng01-263N09.b_49_1215

seq1  GAATTCTTTTTAGTGACAGGATCTCTCTCTGTGTTCATATCAAGTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAGTGACAGGATCTCTCTCTGTGTTCATATCAAGTCATCT  50

seq1  GAGATAGATGAACCAAATAGCAAAACGACTTGGGGTTGCTATAGAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGATGAACCAAATAGCAAAACGACTTGGGGTTGCTATAGAATAAA  100

seq1  AAAATTCTAGCTTTTTAAGGAAATTGCCACTCTCCATGATACTATATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTAGCTTTTTAAGGAAATTGCCACTCTCCATGATACTATATATG  150

seq1  GTTTTCATAGTTACCTATATTTATATAACAATTAGATTGTTTTAGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATAGTTACCTATATTTATATAACAATTAGATTGTTTTAGGAAAT  200

seq1  GAAATAGACAGCTATATTTGACTAATTGTAATCAATAAAACTTCAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGACAGCTATATTTGACTAATTGTAATCAATAAAACTTCAATAAA  250

seq1  TTCTTTTGCATGTCCCATCCCTGACAGGATTTGCAGTATCACAGAGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGCATGTCCCATCCCTGACAGGATTTGCAGTATCACAGAGGGGC  300

seq1  TTAGAATCCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAC  350

seq1  ACACACACACACACACACACTCATTCACACACACAAACACACACACAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACTCATTCACACACACAAACACACACACAGAC  400

seq1  ACACATACTCACACACACACTCACACACACTCACACACACAGACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACTCACACACACACTCACACACACTCACACACACAGACACACAC  450

seq1  ACTCACACACTCACACACACAGACACAGACACACACACATACACACACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACACTCACACACACAGACACAGACACACACACATACACACACTC  500

seq1  ACACACATAGACACAGACACAGACACACTCATACTCACACACACACTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATAGACACAGACACAGACACACTCATACTCACACACACACTCAC  550

seq1  ACACACTCACACACACTCATACACACACACACACTCACACACACACTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCACACACACTCATACACACACACACACTCACACACACACTCAC  600

seq1  ACACACACTTACACACACACACACACACACACACACACACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTTACACACACACACACACACACACACACACACACACACACAC  650

seq1  TCTCACACACACAGAGTGATCTTAGCTCAGTGTGCTGCAGTTCTGGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACACACAGAGTGATCTTAGCTCAGTGTGCTGCAGTTCTGGGCTA  700

seq1  TCACAGTAACTGTTGTCACTGTGATTTTTGTCCCTGAGTTTGTAGTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTAACTGTTGTCACTGTGATTTTTGTCCCTGAGTTTGTAGTACAT  750

seq1  CATCTTTTTTTCTCTGCTTGCCTCTAAGATATTGCCTCTATTGCTGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTTTTCTCTGCTTGCCTCTAAGATATTGCCTCTATTGCTGGTTT  800

seq1  TAGACTTTGATTACCGTGTGCATCACTGGGTGTTGTTTTCATCCTATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTGATTACCGTGTGCATCACTGGGTGTTGTTTTCATCCTATGTA  850

seq1  TTATGTGTAGGTTCAACACACTTCTCAAG-CCTGTGGGTTTGCTATTGG-  898
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  TTATGTGTAGGTTCAACACACTTCTCAAGCCCTGTGGGTTTGCTATTGGT  900

seq1  TTCTTTAAATATCTTTCGCTGTATGCT-CTTCTCCCTCCTCTTC--TTTA  945
      ||||||||||||||||||||||||||| ||||||||||||||||  || |
seq2  TTCTTTAAATATCTTTCGCTGTATGCTCCTTCTCCCTCCTCTTCCTTTAA  950

seq1  GGAGGAACTTGG-CACC-ACTTG-AAATTGTTCC-TCTGCTCATTG-ATG  990
      |||||||||||| |||| ||||| |||||||||| ||||||||||| |||
seq2  GGAGGAACTTGGCCACCAACTTGAAAATTGTTCCTTCTGCTCATTGAATG  1000

seq1  CTGTGCTCCCTCAGCC-TTCATCCTCTGTG-CCCTGCGGCCCCTCTGGG-  1037
      |||||||||||||||| ||||||||||||| ||||||| |||||||||| 
seq2  CTGTGCTCCCTCAGCCTTTCATCCTCTGTGCCCCTGCGCCCCCTCTGGGA  1050

seq1  ATTGTTGCTAAT-AATTA-CTCCT--CCCCTCT-CTCT-ATAG--ACAGT  1079
      |||||||||||| ||||| |||||  ||||||| |||| ||||  |||||
seq2  ATTGTTGCTAATAAATTACCTCCTTCCCCCTCTCCTCTAATAGAAACAGT  1100

seq1  TA--TTTTCTTGC--TTTCATA-CATA-CGTGGGTTTTTAAAAATT-AGA  1122
      ||  |||||||||  || |||| |||| ||| |||||||||||||| | |
seq2  TAATTTTTCTTGCCTTTCCATACCATACCGTTGGTTTTTAAAAATTAAAA  1150

seq1  TACT--AGATATGTTGA  1137
      ||||  | |||||||||
seq2  TACTAAAAATATGTTGA  1167

seq1: chr17_71557835_71558979
seq2: B6Ng01-263N09.g_68_1209 (reverse)

seq1  TGTTGAGGCTGTCAC-TGACCTTTGGCCT-GCGA-GTGTTAATAGCTGCC  47
      ||||||||||||||| ||||| ||||||| |||| ||||||||||||| |
seq2  TGTTGAGGCTGTCACTTGACC-TTGGCCTGGCGAGGTGTTAATAGCTGGC  49

seq1  TTGTTAATAGAAGT-GCTGTGATACTCTTTAAGCCACAGT-GAGTCCTGT  95
      |   |||||||||| |||||||||||||||||| |||||| |||| ||||
seq2  T--GTAATAGAAGTGGCTGTGATACTCTTTAAG-CACAGTGGAGT-CTGT  95

seq1  GCCTCACTGCTCCCTGGGCTTTACCAGGGCACCATCAGACTCAGGGGAGA  145
      | ||||||||| ||||||||||||||||||| ||||||||||||||||| 
seq2  GGCTCACTGCT-CCTGGGCTTTACCAGGGCA-CATCAGACTCAGGGGAGG  143

seq1  CCTTCAGCCTAG-AGAACTCACACAGTTGTATGATTCCTCAGTATCAGTG  194
       |||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  ACTTCAG-CTAGAAGAACTCACACAGTTGTATGATTCCTCAGTATCAGTG  192

seq1  TCCCTTGGCTCTAGGCTTTAAAACTATTTTAAACTGTTTTAAAGGGGGTG  244
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCCTTGGCTCTAGGCTTTAAAACTATTTTAAACTG-TTTAAAGGGGGTG  241

seq1  GAAGGGGGCAAGAAAAGAGAAGAGGGAAAGATAAATGAGGTTTAACCTAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGGCAAGAAAAGAGAAGAGGGAAAGATAAATGAGGTTTAACCTAA  291

seq1  CTTTTCCTGGGGCTACGACTACATGAATATTAGACTCTGGTGGTCAAAGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTGGGGCTACGACTACATGAATATTAGACTCTGGTGGTCAAAGG  341

seq1  ACAGCTTCAGCCTGGTTACAGTCTAATCTTAATGTAGGTTGTAAGCCCAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCAGCCTGGTTACAGTCTAATCTTAATGTAGGTTGTAAGCCCAG  391

seq1  GGAGTGTATTGATTCTAAAAGAGTCATATTAATTTTTTTTAAGATTTATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTATTGATTCTAAAAGAGTCATATTAATTTTTTTTAAGATTTATT  441

seq1  TCATTTATGTGAGTACATTATAGCTGTCTTCAGACACACCAGAAGAGGGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATGTGAGTACATTATAGCTGTCTTCAGACACACCAGAAGAGGGC  491

seq1  AGTAGATCTTATTACAGAGCCACCATGTGGTTGCTGGGAATTGAACTCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCTTATTACAGAGCCACCATGTGGTTGCTGGGAATTGAACTCAG  541

seq1  GACCTCTGGAAGAGCAGTCAGTGCTCTTAACCTTTGAGCCATGTCTCCAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGGAAGAGCAGTCAGTGCTCTTAACCTTTGAGCCATGTCTCCAG  591

seq1  CCCAGAAATGACAGTTCAGATGGCTGGGAGCCATCAAACAGTAGCTGGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAATGACAGTTCAGATGGCTGGGAGCCATCAAACAGTAGCTGGAG  641

seq1  TTCAAACTGAGGTCTTTTGGGTCCACAGTCTTACCTGCTAACCCACAGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGAGGTCTTTTGGGTCCACAGTCTTACCTGCTAACCCACAGCT  691

seq1  CCAGCACATATTAATTCTTGGCTTAGAAGTCAGTGCATAAGTAAAAAGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACATATTAATTCTTGGCTTAGAAGTCAGTGCATAAGTAAAAAGAA  741

seq1  CCTCCAGTAAGGAGGGATGCTTCAAAGGAAATTGTATATTGTACATTGTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTAAGGAGGGATGCTTCAAAGGAAATTGTATATTGTACATTGTA  791

seq1  CTACCCGTATATTTAATAGTCATCCCTGAGGTAGAAAGCATGGTTTCTAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCGTATATTTAATAGTCATCCCTGAGGTAGAAAGCATGGTTTCTAT  841

seq1  AGCAACTTACTAAAACTGGATGACTTTATGTGGAAGCCAAAGGACCAGAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTTACTAAAACTGGATGACTTTATGTGGAAGCCAAAGGACCAGAC  891

seq1  TTCTGTGTTTATTTTAGAGACCTTGAAGTTATTATCACTACCAAAATAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTTTATTTTAGAGACCTTGAAGTTATTATCACTACCAAAATAGA  941

seq1  CTAGTAGTATAGTTATCACATTGTAAGTAGAAGGTTTAAAGCTGGGAGTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGTATAGTTATCACATTGTAAGTAGAAGGTTTAAAGCTGGGAGTG  991

seq1  TGAGGGAGAGAAAGTTTAGAACTTGACCCTTTAAACATAGGTTTCTGATC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGAGAAAGTTTAGAACTTGACCCTTTAAACATAGGTTTCTGATC  1041

seq1  ATAACATATCTAAGTCTACTTGTGTTTTTTGTTTTATTTGGAGGTGGGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATATCTAAGTCTACTTGTGTTTTTTGTTTTATTTGGAGGTGGGGA  1091

seq1  GTGGGGTTCAAAACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTTCAAAACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAATT  1141

seq1  C  1145
      |
seq2  C  1142