BAC Information

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BAC

Clone NameB6Ng01-264A17
Chromosome17 (Build37)
Map Location 89,668,594 - 89,831,528
singlet/doubletdoublet
Overlap geneLOC100043904
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264A17.bB6Ng01-264A17.g
ACCGA068054GA068055
length1,1671,107
definitionB6Ng01-264A17.b B6Ng01-264A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,830,351 - 89,831,528)(89,668,594 - 89,669,703)
sequence
gaattcaccattccaattaacagccttatactgttcatggctttgtggta
gctaagggaattcatcttggaatacttcattacatgtttacattaaaaat
actttgagtatgggattgctaaagatgttttattgagagaaaatcttctg
atggtgtttggagtttaaagaaataaatctctcacaattgaactctcatg
tgccatgtgggagggatctaaattagttaattatacaaagaacagcagaa
aggacagaattagatccatgatactgagtcccagtaataagaaacttgag
gagaatatcaaaccctcttgcttagatatggcactatttctaaaatagtg
gaaaattttaagcagagctattacttcacatggaagagacctgaggtgct
ggcttcctgggccttggtccacttgtgagaatcctcgggttcactgttgt
tgtacttgcacagactaagtaccatcaaccacggttttctaaaaattaaa
atgctataataaagaaatagaggttataaaagtagattcttcacatttca
gaataaatgtttgttttgagtgacttttccacagctctcctgaaaggaat
atattaatctattaaattttaaaattattgcagtgagttataatttttgc
aaatccacaaatgtttctcttttaaaaacttctaaagtgcaatcacactt
ataaatgcacatttattataaatctgtcaacatatatgcagcacacataa
acactagtggcatccaagagcagacattcgcacatgggcacttaaccatg
tgtgcattcccaccctgaagcttcccttcaggatttaattaaagtgccaa
ttcgaaagactgatgatttctaggactaggtgctgaaacaagtaaataaa
aacgttggtggcgtttttgacagctgatacgatgacagggagtgcattac
cctagtttcacaagaataaatcatttctcattctacacataccttttgaa
tctctttctcgttcctcccatctctgctctggggaggggctgctgcttag
aacgagatcagatacgaagcagtatcttctcaactcttctccacaggaag
caggcaatcgaagctacctaacatatgatgatgagactggcagaaaggcc
tagctttctccccatgg

gaattcaatgaaatttcagctctctttcttctgttttactgttatctgtc
cttgctccttacttcattttcaagacagtgttggagcctatggtggtttc
caatgatgtgagaagttgggacaagaaaggctagggttgatggaagatat
cagccatctcttttgttcttacctacaacactgtttctactgcttgcacc
gtgaagtgaagtgcttggaacaggagacaagagagcactgacgtcaaggg
agctggtttaaacagcaacaaagacacagcacagcaggtattttccatgc
ataggaagctggactcaaatctgacggttttcttccctcaccagttctgc
agctcaagtgtgtagagaggatgtatcttatgcctgtatgaatgtggcac
caggcaaaaaaaaatctgatggtttatgacttatgtagtgatgtcaggga
ggcagaaaggattctgggatagtgccaggttggaggtttacccaggaaag
atagggggagatgagtacacatgcatggtgtttgagcacaggtccagcca
catggaagaatgtagattagaaaaaaatgggtccttttaagttatgacct
agtcagagaggaacctagctatatggccaataaggacttatccttcctcc
ttcctgctctttctccaataaatatagtatagatatataaatataggctt
gggatctgaagagagaaaatgaaggttttccaatcctacactctctttac
agcctcccttcctgcctggggttgaggctaggccaagttccattctttac
ccacaggaacattcttgtataaaaattctcagaatgtactgactgatagt
tacctgagactttccagaggagttcgcatgtcatgcttgctagccaatag
atttaaaggtcaatatgcttagccaataagtttgaaattgtaacctttac
tgatataaccctgtacccctaaaagtataaaaaactgcatgtaatagcca
ctggggggtcaccttcttagtgactcactgaaggactattgagatggacc
ctcatgcctgaacagcatggtgccttttacatcgatctgcatctgctgtt
tctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89830351_89831528
seq2: B6Ng01-264A17.b_45_1211 (reverse)

seq1  CCATGGGGAAGAAAACTAGGCTTTTCTTCCAGT-TCTTCATCCATACAAT  49
      |||||||| ||||| |||||| ||||| ||||| || |||||      ||
seq2  CCATGGGG-AGAAAGCTAGGCCTTTCTGCCAGTCTCATCATC------AT  43

seq1  ATGGTAAGTAGCTTTTGGGTTTTCCCTGCTTTCTTGTGGAGAAGAGTTTG  99
      ||| || |||||||       || ||||| ||| |||||||||||| |||
seq2  ATGTTAGGTAGCTT----CGATTGCCTGC-TTCCTGTGGAGAAGAG-TTG  87

seq1  AGAAGATACTGCTTTCGTATCTGATCTCTGTCTAAGCAGCAGCCCCT-CC  148
      |||||||||||| |||||||||||||||  ||||||||||||||||| ||
seq2  AGAAGATACTGC-TTCGTATCTGATCTCGTTCTAAGCAGCAGCCCCTCCC  136

seq1  CAGAGCAGAGAAGGGAGAAAAGAGAAAAGAAGATTC-AAAGGTATGTGTA  197
      ||||||||||| ||||| || ||||||   |||||| |||||||||||||
seq2  CAGAGCAGAGATGGGAGGAACGAGAAA--GAGATTCAAAAGGTATGTGTA  184

seq1  GAATGAG-AATGATTTATTCTTGTGAAACTTGGGTAATGCACT-CCTGTC  245
      ||||||| |||||||||||||||||||||| |||||||||||| ||||||
seq2  GAATGAGAAATGATTTATTCTTGTGAAACTAGGGTAATGCACTCCCTGTC  234

seq1  ATCGTATCAGCTGTCAAAAACGCCACCAACGTTTTTATTTACTTGTTTCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTATCAGCTGTCAAAAACGCCACCAACGTTTTTATTTACTTGTTTCA  284

seq1  GCACCTAGTCCTAGAAATCATCAGTCTTTCGAATTGGCACTTTAATTAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTAGTCCTAGAAATCATCAGTCTTTCGAATTGGCACTTTAATTAAA  334

seq1  TCCTGAAGGGAAGCTTCAGGGTGGGAATGCACACATGGTTAAGTGCCCAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGGGAAGCTTCAGGGTGGGAATGCACACATGGTTAAGTGCCCAT  384

seq1  GTGCGAATGTCTGCTCTTGGATGCCACTAGTGTTTATGTGTGCTGCATAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGAATGTCTGCTCTTGGATGCCACTAGTGTTTATGTGTGCTGCATAT  434

seq1  ATGTTGACAGATTTATAATAAATGTGCATTTATAAGTGTGATTGCACTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGACAGATTTATAATAAATGTGCATTTATAAGTGTGATTGCACTTT  484

seq1  AGAAGTTTTTAAAAGAGAAACATTTGTGGATTTGCAAAAATTATAACTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTTTAAAAGAGAAACATTTGTGGATTTGCAAAAATTATAACTCA  534

seq1  CTGCAATAATTTTAAAATTTAATAGATTAATATATTCCTTTCAGGAGAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATAATTTTAAAATTTAATAGATTAATATATTCCTTTCAGGAGAGC  584

seq1  TGTGGAAAAGTCACTCAAAACAAACATTTATTCTGAAATGTGAAGAATCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAAGTCACTCAAAACAAACATTTATTCTGAAATGTGAAGAATCT  634

seq1  ACTTTTATAACCTCTATTTCTTTATTATAGCATTTTAATTTTTAGAAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATAACCTCTATTTCTTTATTATAGCATTTTAATTTTTAGAAAAC  684

seq1  CGTGGTTGATGGTACTTAGTCTGTGCAAGTACAACAACAGTGAACCCGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTTGATGGTACTTAGTCTGTGCAAGTACAACAACAGTGAACCCGAG  734

seq1  GATTCTCACAAGTGGACCAAGGCCCAGGAAGCCAGCACCTCAGGTCTCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCACAAGTGGACCAAGGCCCAGGAAGCCAGCACCTCAGGTCTCTT  784

seq1  CCATGTGAAGTAATAGCTCTGCTTAAAATTTTCCACTATTTTAGAAATAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAAGTAATAGCTCTGCTTAAAATTTTCCACTATTTTAGAAATAG  834

seq1  TGCCATATCTAAGCAAGAGGGTTTGATATTCTCCTCAAGTTTCTTATTAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATCTAAGCAAGAGGGTTTGATATTCTCCTCAAGTTTCTTATTAC  884

seq1  TGGGACTCAGTATCATGGATCTAATTCTGTCCTTTCTGCTGTTCTTTGTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCAGTATCATGGATCTAATTCTGTCCTTTCTGCTGTTCTTTGTA  934

seq1  TAATTAACTAATTTAGATCCCTCCCACATGGCACATGAGAGTTCAATTGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACTAATTTAGATCCCTCCCACATGGCACATGAGAGTTCAATTGT  984

seq1  GAGAGATTTATTTCTTTAAACTCCAAACACCATCAGAAGATTTTCTCTCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTTATTTCTTTAAACTCCAAACACCATCAGAAGATTTTCTCTCA  1034

seq1  ATAAAACATCTTTAGCAATCCCATACTCAAAGTATTTTTAATGTAAACAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACATCTTTAGCAATCCCATACTCAAAGTATTTTTAATGTAAACAT  1084

seq1  GTAATGAAGTATTCCAAGATGAATTCCCTTAGCTACCACAAAGCCATGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAAGTATTCCAAGATGAATTCCCTTAGCTACCACAAAGCCATGAA  1134

seq1  CAGTATAAGGCTGTTAATTGGAATGGTGAATTC  1178
      |||||||||||||||||||||||||||||||||
seq2  CAGTATAAGGCTGTTAATTGGAATGGTGAATTC  1167


seq1: chr17_89668594_89669703
seq2: B6Ng01-264A17.g_67_1173

seq1  GAATTCAATGAAATTTCAGCTCTCTTTCTTCTGTTTTACTGTTATCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAAATTTCAGCTCTCTTTCTTCTGTTTTACTGTTATCTGTC  50

seq1  CTTGCTCCTTACTTCATTTTCAAGACAGTGTTGGAGCCTATGGTGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCCTTACTTCATTTTCAAGACAGTGTTGGAGCCTATGGTGGTTTC  100

seq1  CAATGATGTGAGAAGTTGGGACAAGAAAGGCTAGGGTTGATGGAAGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGTGAGAAGTTGGGACAAGAAAGGCTAGGGTTGATGGAAGATAT  150

seq1  CAGCCATCTCTTTTGTTCTTACCTACAACACTGTTTCTACTGCTTGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCTCTTTTGTTCTTACCTACAACACTGTTTCTACTGCTTGCACC  200

seq1  GTGAAGTGAAGTGCTTGGAACAGGAGACAAGAGAGCACTGACGTCAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTGAAGTGCTTGGAACAGGAGACAAGAGAGCACTGACGTCAAGGG  250

seq1  AGCTGGTTTAAACAGCAACAAAGACACAGCACAGCAGGTATTTTCCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTTTAAACAGCAACAAAGACACAGCACAGCAGGTATTTTCCATGC  300

seq1  ATAGGAAGCTGGACTCAAATCTGACGGTTTTCTTCCCTCACCAGTTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGCTGGACTCAAATCTGACGGTTTTCTTCCCTCACCAGTTCTGC  350

seq1  AGCTCAAGTGTGTAGAGAGGATGTATCTTATGCCTGTATGAATGTGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGTGTGTAGAGAGGATGTATCTTATGCCTGTATGAATGTGGCAC  400

seq1  CAGGCAAAAAAAAATCTGATGGTTTATGACTTATGTAGTGATGTCAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAAAAAAATCTGATGGTTTATGACTTATGTAGTGATGTCAGGGA  450

seq1  GGCAGAAAGGATTCTGGGATAGTGCCAGGTTGGAGGTTTACCCAGGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAAGGATTCTGGGATAGTGCCAGGTTGGAGGTTTACCCAGGAAAG  500

seq1  ATAGGGGGAGATGAGTACACATGCATGGTGTTTGAGCACAGGTCCAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGGAGATGAGTACACATGCATGGTGTTTGAGCACAGGTCCAGCCA  550

seq1  CATGGAAGAATGTAGATTAGAAAAAAATGGGTCCTTTTAAGTTATGACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGAATGTAGATTAGAAAAAAATGGGTCCTTTTAAGTTATGACCT  600

seq1  AGTCAGAGAGGAACCTAGCTATATGGCCAATAAGGACTTATCCTTCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGAGGAACCTAGCTATATGGCCAATAAGGACTTATCCTTCCTCC  650

seq1  TTCCTGCTCTTTCTCCAATAAATATAGTATAGATATATAAATATAGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTCTTTCTCCAATAAATATAGTATAGATATATAAATATAGGCTT  700

seq1  GGGATCTGAAGAGAGAAAATGAAGGTTTTCCAATCCTACACTCTCTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTGAAGAGAGAAAATGAAGGTTTTCCAATCCTACACTCTCTTTAC  750

seq1  AGCCTCCCTTCCTGCCTGGGGTTGAGGCTAGGCCAAGTTCCATTCTTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCCTTCCTGCCTGGGGTTGAGGCTAGGCCAAGTTCCATTCTTTAC  800

seq1  CCACAGGAACATTCTTGTATAAAAATTCTCAGAATGTACTGACTGATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAACATTCTTGTATAAAAATTCTCAGAATGTACTGACTGATAGT  850

seq1  TACCTGAGACTTTCCAGAGGAGTTCGCATGTCATGCTTGCTAGCCAATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAGACTTTCCAGAGGAGTTCGCATGTCATGCTTGCTAGCCAATAG  900

seq1  ATTTAAAGGTCAATATGCTTAGCCAATAAGTTTG-AATTGTAACC-TTAC  948
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  ATTTAAAGGTCAATATGCTTAGCCAATAAGTTTGAAATTGTAACCTTTAC  950

seq1  TGATATAA-CCTGTACCCCTAAAAAGTAT-AAAAACTGCATGTAATAGCC  996
      |||||||| ||||||||||| |||||||| ||||||||||||||||||||
seq2  TGATATAACCCTGTACCCCT-AAAAGTATAAAAAACTGCATGTAATAGCC  999

seq1  ACT-GGGGGTCACCTTCTTAGTGACTCACCTTGAGGGACTAATTGAAGGT  1045
      ||| |||||||||||||||||||||||||  ||| ||||| |||| || |
seq2  ACTGGGGGGTCACCTTCTTAGTGACTCAC--TGAAGGACT-ATTG-AGAT  1045

seq1  TGACCCTCATGCCCTGGAAAACAAGCATGTTG-CTTTTACATCGATCTGC  1094
       |||||||||| ||||   ||| |||||| || |||||||||||||||||
seq2  GGACCCTCATG-CCTG---AAC-AGCATGGTGCCTTTTACATCGATCTGC  1090

seq1  ATCTTGGTGTCTCTCT--  1110
      ||| || ||| |||||  
seq2  ATC-TGCTGTTTCTCTCT  1107


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