BAC Information

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BAC

Clone NameB6Ng01-264C23
Chromosome17 (Build37)
Map Location 17,597,689 - 17,754,068
singlet/doubletdoublet
Overlap geneLOC383297, Lnpep
Upstream geneLOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1
Downstream geneEG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264C23.bB6Ng01-264C23.g
ACCGA068155GA068156
length1,0761,135
definitionB6Ng01-264C23.b B6Ng01-264C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,752,989 - 17,754,068)(17,597,689 - 17,598,818)
sequence
gaattcaacatctgtttagtttatataattgaatgacagtgattgaatag
tttctttaaaatgtggttacagtcttagccttttgaataattacaatttg
tttggacggattaaataagaaaactagtacacaaatgattgtaaattggt
gagaaaattactgctttagtggtttaagattgtcatagacttgtatttta
ttagtctaatgtctcagatgaaaaatatttcaaagaattatcaaaaaaag
catttcaacaagttatctgcagaataattacttggtaaaatctattgaat
attgggcctggcaaatttattcaccaactgaaatattttctgacgtgagt
tttttgtttatattgaaatggtttcgttgcccttacagaccccattattg
atattcgtaagtgcattttcctgtgcctcagcctgaattccactttcctg
ggctggtatctcagaaagcagaatgctgatatttcagagcatatgcagtc
cattgtgaaatgacactaaagctagtcctttattccatcttcagacttaa
agtttctaattttatgtggggtaaaagaggaaatgtgaattatataaact
taaagtataattatgatatcttaaaaattataatacaagtattaaaaatt
tggttataagctacaaaattttggaaaattattatcatgaaatcaattgt
cctcccccctacttccataaaagcatttttttcctttgatttcttccacg
tttttcctttgtttcattttatttattttttttatttattcactttacat
cctgctcactgccttcctcctggtcacctcctccatcaggccttccctcc
atgcctcccaccccttttcttctgagcagatgggggccctcttcagtatc
ctcccactctggtacatcaagtttctgtgggactaggtgcatcttctccc
actgaggccagacaggcagcccagctatagacatacccacggacagaaca
acagctcttgggatagtctactcagttggtcagacccacatgaggacaca
ttgtgtgttgtgtttggggggggtgg
gaattcacttaatatatccttcactgagcagtatagccctggcctctcag
gtaagaacatacagaggagtatctttctggaagctagaaattagcagaag
gggcaaagagctatgtttttcctctctaaagagcacctcggcaccaacat
ttggtctgactttcaagcatcctgctaggagccaaaaactcacttctttc
aatctaagtaaaccttggtcatatttttgtctgagagcaaaactggtgta
gaaatgtaagcagaacttcactcttacagcttttgatttctaatgaatgc
tggtttccagtgagaaatactagattgcaatttataggcagttcctaatt
tcagcatgaattgtattccataagtttatttgtaaacaaattaatccaac
tctgagtggtgtgtgtgtgtttaagagcaagaccagaattggttgcgatt
ttcccagaaaagactacttagctatagagtacctaaaattttgatccaca
aaacctgagtctgataaaccaagaaatttgggtttatctcaaagatcaag
cacttgcctagtatgtgcaaggcccttatttggtttccagatccaaaagg
tagaacaaggaacagccctaggtagcgggccttattctaaaacatctccc
tggggtcatttctcatgtccagattggttgtctttttttcactctctatc
accatttagtcatggtttcttctgtcaaatttctgaaaacaaacaaaaca
aagagaatggctttttctaccagaacaataaaccaggacttgacatcttt
gcgtggtttttcatggctatgcacacacgtatgcatgattgcgcatgtct
cacggttttgctttcttaaattctggatccatttttactgtgattctttc
ctgatgcaacatgatagtagccatatgagtaagtcaccctatcagttccc
aatccaagaacccaagtaccaccacaatgcttttgtcccaagtcttgctt
ctgagttgatggttgtggtcagacctgtgttacttgtcttgtctcaccta
caacccaggtggttcaggtcagctcatatagacacttagacatagtgcca
aggaggaaggcaaaaattcgttcagttactagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_17752989_17754068
seq2: B6Ng01-264C23.b_45_1120 (reverse)

seq1  CCA-CCCCCCCACACAC-ACACAC-ATGTGGTCTTCATGTGGGTCCTGAA  47
      ||| |||||||| |||| |||||| |||| ||| |||||||||| |||| 
seq2  CCACCCCCCCCAAACACAACACACAATGT-GTCCTCATGTGGGT-CTGAC  48

seq1  CAACTGGAGTAGGAACTATCCCAAGAGCTGTTG-TCTGTCCGTGGGTTAT  96
      ||||| ||||||  ||||||||||||||||||| |||||||||||| |||
seq2  CAACT-GAGTAG--ACTATCCCAAGAGCTGTTGTTCTGTCCGTGGG-TAT  94

seq1  GTTCTTATAGCTGGGCTGCCTTGTCTGGCCTCAGTGGGAGAAGATGCACC  146
      ||   ||||||||||||||| |||||||||||||||||||||||||||||
seq2  GT--CTATAGCTGGGCTGCC-TGTCTGGCCTCAGTGGGAGAAGATGCACC  141

seq1  TAGTCCCACAGAAACTTGATGTACCAGAGTGGGAGGATACTGAAGAGGGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCACAGAAACTTGATGTACCAGAGTGGGAGGATACTGAAGAGGGC  191

seq1  CCCCATCTGCTCAGAAGAAAAGGGGTGGGAGGCATGGAGGGAAGGCCTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTGCTCAGAAGAAAAGGGGTGGGAGGCATGGAGGGAAGGCCTGA  241

seq1  TGGAGGAGGTGACCAGGAGGAAGGCAGTGAGCAGGATGTAAAGTGAATAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGTGACCAGGAGGAAGGCAGTGAGCAGGATGTAAAGTGAATAA  291

seq1  AT-AAAAAAATAAATAAAATGAAACAAAGGAAAAACGTGGAAGAAATCAA  345
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAATAAATAAAATGAAACAAAGGAAAAACGTGGAAGAAATCAA  341

seq1  AGGAAAAAAATGCTTTTATGGAAGTAGGGGGGAGGACAATTGATTTCATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAATGCTTTTATGGAAGTAGGGGGGAGGACAATTGATTTCATG  391

seq1  ATAATAATTTTCCAAAATTTTGTAGCTTATAACCAAATTTTTAATACTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATTTTCCAAAATTTTGTAGCTTATAACCAAATTTTTAATACTTG  441

seq1  TATTATAATTTTTAAGATATCATAATTATACTTTAAGTTTATATAATTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATTTTTAAGATATCATAATTATACTTTAAGTTTATATAATTCA  491

seq1  CATTTCCTCTTTTACCCCACATAAAATTAGAAACTTTAAGTCTGAAGATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTCTTTTACCCCACATAAAATTAGAAACTTTAAGTCTGAAGATG  541

seq1  GAATAAAGGACTAGCTTTAGTGTCATTTCACAATGGACTGCATATGCTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGGACTAGCTTTAGTGTCATTTCACAATGGACTGCATATGCTCT  591

seq1  GAAATATCAGCATTCTGCTTTCTGAGATACCAGCCCAGGAAAGTGGAATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATCAGCATTCTGCTTTCTGAGATACCAGCCCAGGAAAGTGGAATT  641

seq1  CAGGCTGAGGCACAGGAAAATGCACTTACGAATATCAATAATGGGGTCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAGGCACAGGAAAATGCACTTACGAATATCAATAATGGGGTCTG  691

seq1  TAAGGGCAACGAAACCATTTCAATATAAACAAAAAACTCACGTCAGAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCAACGAAACCATTTCAATATAAACAAAAAACTCACGTCAGAAAA  741

seq1  TATTTCAGTTGGTGAATAAATTTGCCAGGCCCAATATTCAATAGATTTTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGTTGGTGAATAAATTTGCCAGGCCCAATATTCAATAGATTTTA  791

seq1  CCAAGTAATTATTCTGCAGATAACTTGTTGAAATGCTTTTTTTGATAATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAATTATTCTGCAGATAACTTGTTGAAATGCTTTTTTTGATAATT  841

seq1  CTTTGAAATATTTTTCATCTGAGACATTAGACTAATAAAATACAAGTCTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATATTTTTCATCTGAGACATTAGACTAATAAAATACAAGTCTA  891

seq1  TGACAATCTTAAACCACTAAAGCAGTAATTTTCTCACCAATTTACAATCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATCTTAAACCACTAAAGCAGTAATTTTCTCACCAATTTACAATCA  941

seq1  TTTGTGTACTAGTTTTCTTATTTAATCCGTCCAAACAAATTGTAATTATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTACTAGTTTTCTTATTTAATCCGTCCAAACAAATTGTAATTATT  991

seq1  CAAAAGGCTAAGACTGTAACCACATTTTAAAGAAACTATTCAATCACTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCTAAGACTGTAACCACATTTTAAAGAAACTATTCAATCACTGT  1041

seq1  CATTCAATTATATAAACTAAACAGATGTTGAATTC  1080
      |||||||||||||||||||||||||||||||||||
seq2  CATTCAATTATATAAACTAAACAGATGTTGAATTC  1076

seq1: chr17_17597689_17598818
seq2: B6Ng01-264C23.g_66_1200

seq1  GAATTCACTTAATATATCCTTCACTGAGCAGTATAGCCCTGGCCTCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTAATATATCCTTCACTGAGCAGTATAGCCCTGGCCTCTCAG  50

seq1  GTAAGAACATACAGAGGAGTATCTTTCTGGAAGCTAGAAATTAGCAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAACATACAGAGGAGTATCTTTCTGGAAGCTAGAAATTAGCAGAAG  100

seq1  GGGCAAAGAGCTATGTTTTTCCTCTCTAAAGAGCACCTCGGCACCAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGAGCTATGTTTTTCCTCTCTAAAGAGCACCTCGGCACCAACAT  150

seq1  TTGGTCTGACTTTCAAGCATCCTGCTAGGAGCCAAAAACTCACTTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTGACTTTCAAGCATCCTGCTAGGAGCCAAAAACTCACTTCTTTC  200

seq1  AATCTAAGTAAACCTTGGTCATATTTTTGTCTGAGAGCAAAACTGGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGTAAACCTTGGTCATATTTTTGTCTGAGAGCAAAACTGGTGTA  250

seq1  GAAATGTAAGCAGAACTTCACTCTTACAGCTTTTGATTTCTAATGAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAAGCAGAACTTCACTCTTACAGCTTTTGATTTCTAATGAATGC  300

seq1  TGGTTTCCAGTGAGAAATACTAGATTGCAATTTATAGGCAGTTCCTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCAGTGAGAAATACTAGATTGCAATTTATAGGCAGTTCCTAATT  350

seq1  TCAGCATGAATTGTATTCCATAAGTTTATTTGTAAACAAATTAATCCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGAATTGTATTCCATAAGTTTATTTGTAAACAAATTAATCCAAC  400

seq1  TCTGAGTGGTGTGTGTGTGTTTAAGAGCAAGACCAGAATTGGTTGCGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTGGTGTGTGTGTGTTTAAGAGCAAGACCAGAATTGGTTGCGATT  450

seq1  TTCCCAGAAAAGACTACTTAGCTATAGAGTACCTAAAATTTTGATCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAAAAGACTACTTAGCTATAGAGTACCTAAAATTTTGATCCACA  500

seq1  AAACCTGAGTCTGATAAACCAAGAAATTTGGGTTTATCTCAAAGATCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGAGTCTGATAAACCAAGAAATTTGGGTTTATCTCAAAGATCAAG  550

seq1  CACTTGCCTAGTATGTGCAAGGCCCTTATTTGGTTTCCAGATCCAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCCTAGTATGTGCAAGGCCCTTATTTGGTTTCCAGATCCAAAAGG  600

seq1  TAGAACAAGGAACAGCCCTAGGTAGCGGGCCTTATTCTAAAACATCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAGGAACAGCCCTAGGTAGCGGGCCTTATTCTAAAACATCTCCC  650

seq1  TGGGGTCATTTCTCATGTCCAGATTGGTTGTCTTTTTTTCACTCTCTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCATTTCTCATGTCCAGATTGGTTGTCTTTTTTTCACTCTCTATC  700

seq1  ACCATTTAGTCATGGTTTCTTCTGTCAAATTTCTGAAAACAAACAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTAGTCATGGTTTCTTCTGTCAAATTTCTGAAAACAAACAAAACA  750

seq1  AAGAGAATGGCTTTTTCTACCAGAACAATAAACCAGGACTTGACATCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATGGCTTTTTCTACCAGAACAATAAACCAGGACTTGACATCTTT  800

seq1  GCGTGGTTTTTCATGGCTATGCACACACGTATGCATGATTGCGCATGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTTTTTCATGGCTATGCACACACGTATGCATGATTGCGCATGTCT  850

seq1  CA-GGGTTTGCTTTCTTAAATTCTGGATCCATTTTTACTGTGATTCTTTC  899
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTTTTGCTTTCTTAAATTCTGGATCCATTTTTACTGTGATTCTTTC  900

seq1  CTGATGCAACATGATAGTAGCCATATGAGTAAGTCACCCTATCAGTT-CC  948
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGATGCAACATGATAGTAGCCATATGAGTAAGTCACCCTATCAGTTCCC  950

seq1  AATCCAAGAA-CCAAGTACCACCACAATGCTTTTGTCCCAAGTC-TGCTT  996
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AATCCAAGAACCCAAGTACCACCACAATGCTTTTGTCCCAAGTCTTGCTT  1000

seq1  CTGAGTTGATGGTTGTGGTCAGACCTGTGTTACCTGTC-TGTCTCA-CTA  1044
      ||||||||||||||||||||||||||||||||| |||| ||||||| |||
seq2  CTGAGTTGATGGTTGTGGTCAGACCTGTGTTACTTGTCTTGTCTCACCTA  1050

seq1  CAACC--AGTGG-TCAAGTCAAGCTCATATAGACAACTTAGACATAGTGC  1091
      |||||   |||| ||| ||| ||||||||||||| |||||||||||||||
seq2  CAACCCAGGTGGTTCAGGTC-AGCTCATATAGAC-ACTTAGACATAGTGC  1098

seq1  AAAAGGAGGAGGGCAAAATATGGGTTCAGTTACCAGAGG  1130
        |||||||| ||||||| ||  |||||||||| |||||
seq2  -CAAGGAGGAAGGCAAAA-ATTCGTTCAGTTACTAGAGG  1135