BAC Information

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BAC

Clone NameB6Ng01-264I19
Chromosome17 (Build37)
Map Location 40,236,066 - 40,237,207
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264I19.bB6Ng01-264I19.g
ACCGA068426GA068427
length1,2091,122
definitionB6Ng01-264I19.b B6Ng01-264I19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatcttggtagatttttacctttgatgtgtataaagtgcccctct
ttgtcttttttgataactttcagatggaagtcatttttattaaatattag
aatggctactccagcttggttcttcggaccatttgcttggaaaattgttt
tccagcctttcactctgaggtactgtctgtctttttccccgaggtaggtt
tcctataagcagcaaaatgttgggtcgcgtttgtgtagcaagtcttttgt
ctatgtctttttatttgaggaattgagtcctatgatgttaagagaaatta
aagaaaattaacttttccttcctgtttttttgttgttaaagttgggatct
gttcttgtggctgtcttcatttaggtttgtagaaggattactttcttgct
ttttctcgggtgtagtgtctgtcctttgttggtgttttcccattattatt
ctttgaagggctggattcaaggaaagacattgtgtgaatttggttttgtc
atggaatactttggtttctccatctatggtaattgagagtttttctggtt
atagtagcctgggctagcatttgtgttctcttagtgtctgtataatatat
gtgcaagatcttctggcttcaatagtctctggtgaaaagtctggtgtaat
tctaataagcctgcctttatattttacttgaccttcttcccttatggctt
ttaatattctatctttatttaatgctttcgtttttctgattattatgtgt
caggagcaatttttttctggtccagtctatttggagttctgtaggcttct
tgtatgttcatgggcatctcttttttaggtttgggaagttttcttctatg
tttttgttgaagatatttgctagcccattaagttgaaaatattcattctc
atctactcctattatccataggtttggtcttctcattttgtctctgattt
cctttatgttttgagttacgatcttttttgcatttgcattttatttgaat
tgctgtgccctgttgtctatggaaatcgtatgcacctgagattctctctc
catctctgtattctgttgctgaatgcctcgaatctatgatcttgagtctt
tcaaaaggatctctattcctcagtgttgtcttccatagtgattactttaa
ttggattctaccttcccattttggtcattgacatggtttatggtacacaa
ttcacattg
gaattccagtggagagccactgaagcaggggacaagggcattgtcttcag
tgtcatagttactggtgattttttttccctgttcaagggatcacttcaaa
cagatgaccatgtgtgctgcacaattaaacccatcctgtcacaaataaca
gaaacaacaaaagtaagaaccagaaaagtatttattgagaaaagagtctc
taatatgtgaattattcaaaatctatcacatatgtgtatgaaatcagtag
agaaccacataaaagaagaaaataaaacccataatagttagtgctgtaga
agcataaaggtgcatagtctgaattataacataatttcactccattttga
ttagattacaataaggaagcatgaggggcccatgataattttactgaaat
ttcacacaattattccttgtgaatttaagacagagggtttcaacctattt
gtacccaccaccactttgggggtcaaatgttcatttcaccgcgagtaata
tcacatatttttaatatcacaatgtataatattaaacagagtagcagtgg
aaataactttatgtttcttggtcaacaaaacatgaggaacttttaaaaag
gattatagcattagaaatattgagcaccacttttttaagataggaaaggt
tagctttttaattttgaagtgatggtaattcttacttttctgctacattc
acagcttattcagaactgtttttattctgcctctatgcggagggactaat
tttcttattatatagaattaatttatactcttcgttcttcttatatcttt
gtggttaagtgaataggatacagacttgacagagactagtaatggacact
gtgttggacactaggaggctcctagtttatttagaaaaaaatcagtcttc
actattctcaattatatgtcaaatgtgtttgggaatgagtgagtaaaatt
tcattattggtgcctaacattaggccttgagtgataatgtagtatgccag
tcattattttttaataattgcctagttaaactttattcagcagtacataa
tccaacgtggtcaatgaatatgatctaaaaccatgttgtctttgtcgagc
cattgaatcagcaacatcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_40236066_40237207
seq2: B6Ng01-264I19.g_67_1188 (reverse)

seq1  ACATAGATGTTTGCTGGTTGTCAATTGGCTCTGACAAAGACAAACCATTG  50
      |||| |||| |||||| |  |||| |||||| |||||||||||  || ||
seq2  ACAT-GATG-TTGCTGAT--TCAA-TGGCTC-GACAAAGACAA--CA-TG  41

seq1  TTTTTAGGATTCATAATTCATTTTGAACAACGTTGGATTAATGTACTGCC  100
       ||||||   |||| |||||||    || |||||||||| ||||||||| 
seq2  GTTTTAG--ATCAT-ATTCATT---GACCACGTTGGATT-ATGTACTGC-  83

seq1  TTGAATAAAGTTTAACTAGGCAATTATTAAAAAATAATGGACTTGGCATA  150
       ||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  -TGAATAAAGTTTAACTAGGCAATTATTAAAAAATAAT-GAC-TGGCATA  130

seq1  CTACATTATCACTCAAGGGCCTAATGTTAGGCACCAATAATGAAATTTTA  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTACATTATCACTCAA-GGCCTAATGTTAGGCACCAATAATGAAATTTTA  179

seq1  CTCACTCATT-CCAAACACATTTGACATATAATTGAGAATAGTGAAGACT  249
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCATTCCCAAACACATTTGACATATAATTGAGAATAGTGAAGACT  229

seq1  GATTTTTTTCTAAATAAACTAGGAGCCTCCTAGTGTCCAACACAGTGTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTCTAAATAAACTAGGAGCCTCCTAGTGTCCAACACAGTGTCC  279

seq1  ATTACTAGTCTCTGTCAAGTCTGTATCCTATTCACTTAACCACAAAGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAGTCTCTGTCAAGTCTGTATCCTATTCACTTAACCACAAAGATA  329

seq1  TAAGAAGAACGAAGAGTATAAATTAATTCTATATAATAAGAAAATTAGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGAACGAAGAGTATAAATTAATTCTATATAATAAGAAAATTAGTC  379

seq1  CCTCCGCATAGAGGCAGAATAAAAACAGTTCTGAATAAGCTGTGAATGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGCATAGAGGCAGAATAAAAACAGTTCTGAATAAGCTGTGAATGTA  429

seq1  GCAGAAAAGTAAGAATTACCATCACTTCAAAATTAAAAAGCTAACCTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAGTAAGAATTACCATCACTTCAAAATTAAAAAGCTAACCTTTC  479

seq1  CTATCTTAAAAAAGTGGTGCTCAATATTTCTAATGCTATAATCCTTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTAAAAAAGTGGTGCTCAATATTTCTAATGCTATAATCCTTTTTA  529

seq1  AAAGTTCCTCATGTTTTGTTGACCAAGAAACATAAAGTTATTTCCACTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCTCATGTTTTGTTGACCAAGAAACATAAAGTTATTTCCACTGC  579

seq1  TACTCTGTTTAATATTATACATTGTGATATTAAAAATATGTGATATTACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTTTAATATTATACATTGTGATATTAAAAATATGTGATATTACT  629

seq1  CGCGGTGAAATGAACATTTGACCCCCAAAGTGGTGGTGGGTACAAATAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGTGAAATGAACATTTGACCCCCAAAGTGGTGGTGGGTACAAATAGG  679

seq1  TTGAAACCCTCTGTCTTAAATTCACAAGGAATAATTGTGTGAAATTTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACCCTCTGTCTTAAATTCACAAGGAATAATTGTGTGAAATTTCAG  729

seq1  TAAAATTATCATGGGCCCCTCATGCTTCCTTATTGTAATCTAATCAAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATCATGGGCCCCTCATGCTTCCTTATTGTAATCTAATCAAAAT  779

seq1  GGAGTGAAATTATGTTATAATTCAGACTATGCACCTTTATGCTTCTACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAAATTATGTTATAATTCAGACTATGCACCTTTATGCTTCTACAG  829

seq1  CACTAACTATTATGGGTTTTATTTTCTTCTTTTATGTGGTTCTCTACTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACTATTATGGGTTTTATTTTCTTCTTTTATGTGGTTCTCTACTGA  879

seq1  TTTCATACACATATGTGATAGATTTTGAATAATTCACATATTAGAGACTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACACATATGTGATAGATTTTGAATAATTCACATATTAGAGACTC  929

seq1  TTTTCTCAATAAATACTTTTCTGGTTCTTACTTTTGTTGTTTCTGTTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAATAAATACTTTTCTGGTTCTTACTTTTGTTGTTTCTGTTATT  979

seq1  TGTGACAGGATGGGTTTAATTGTGCAGCACACATGGTCATCTGTTTGAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGGATGGGTTTAATTGTGCAGCACACATGGTCATCTGTTTGAAG  1029

seq1  TGATCCCTTGAACAGGGAAAAAAAATCACCAGTAACTATGACACTGAAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTTGAACAGGGAAAAAAAATCACCAGTAACTATGACACTGAAGA  1079

seq1  CAATGCCCTTGTCCCCTGCTTCAGTGGCTCTCCACTGGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCTTGTCCCCTGCTTCAGTGGCTCTCCACTGGAATTC  1122